Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.38350 * 119.85080 * 2 1 4 4 C 1.37951 * 120.15119 * 180.23619 * 3 2 1 5 5 C 1.39611 * 119.84624 * 359.51166 * 4 3 2 6 6 C 1.47642 * 120.15288 * 180.27952 * 5 4 3 7 7 N 1.29089 * 125.86091 * 0.02562 * 6 5 4 8 8 O 1.41396 * 112.86880 * 179.64660 * 7 6 5 9 9 C 1.44200 * 107.59871 * 17.49646 * 8 7 6 10 10 H 1.08999 * 110.97355 * 216.48246 * 9 8 7 11 11 C 1.50700 * 110.97382 * 92.74550 * 9 8 7 12 12 O 1.21278 * 120.00285 * 356.45469 * 11 9 8 13 13 N 1.34781 * 119.99978 * 176.45301 * 11 9 8 14 14 C 1.46499 * 120.00126 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47195 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47013 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47444 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47117 * 119.99953 * 21 19 17 24 24 H 1.48502 * 109.47076 * 239.99836 * 21 19 17 25 25 C 1.51687 * 125.86859 * 179.71824 * 6 5 4 26 26 C 1.39620 * 119.70276 * 0.25173 * 5 4 3 27 27 C 1.37948 * 119.84478 * 0.02562 * 26 5 4 28 28 H 1.08998 * 109.46465 * 270.23459 * 1 2 3 29 29 H 1.08997 * 109.46995 * 30.22644 * 1 2 3 30 30 H 1.08996 * 109.47057 * 150.22997 * 1 2 3 31 31 H 1.08004 * 119.92892 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.08138 * 179.79375 * 4 3 2 33 33 H 0.97004 * 119.99915 * 0.02562 * 13 11 9 34 34 H 1.09001 * 109.46962 * 300.00067 * 14 13 11 35 35 H 1.09001 * 109.46747 * 60.00119 * 14 13 11 36 36 H 1.09006 * 109.46730 * 300.00170 * 15 14 13 37 37 H 1.09004 * 109.47251 * 59.99718 * 15 14 13 38 38 H 1.09006 * 109.47337 * 299.99557 * 16 15 14 39 39 H 1.08995 * 109.47713 * 59.99901 * 16 15 14 40 40 H 0.97004 * 119.99817 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.78870 * 282.90067 * 25 6 5 42 42 H 1.08996 * 110.79633 * 46.37627 * 25 6 5 43 43 H 1.07999 * 120.07559 * 180.02562 * 26 5 4 44 44 H 1.08006 * 119.92650 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5752 1.2072 -0.0049 5 6 4.2764 -0.0001 0.0004 6 6 5.7528 -0.0002 0.0014 7 7 6.5091 1.0459 -0.0018 8 8 7.8868 0.7280 0.0083 9 6 8.0192 -0.6503 -0.3943 10 1 8.8234 -1.1413 0.1536 11 6 8.2383 -0.7593 -1.8813 12 8 8.2176 0.2374 -2.5719 13 7 8.4572 -1.9644 -2.4437 14 6 8.6696 -2.0705 -3.8893 15 6 8.8927 -3.5365 -4.2658 16 6 9.1152 -3.6471 -5.7755 17 6 9.3356 -5.0911 -6.1463 18 1 9.3182 -5.8537 -5.3817 19 6 9.5583 -5.4388 -7.4618 20 7 9.5789 -4.5102 -8.3929 21 14 9.8307 -7.2287 -7.9215 22 1 9.7591 -8.0699 -6.6999 23 1 8.7815 -7.6588 -8.8802 24 1 11.1677 -7.3804 -8.5499 25 6 6.6415 -1.2294 0.0130 26 6 3.5752 -1.2074 0.0054 27 6 2.1957 -1.2000 0.0044 28 1 -0.3632 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5173 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6521 2.1332 0.0004 32 1 4.1117 2.1446 -0.0083 33 1 8.4733 -2.7617 -1.8913 34 1 7.7932 -1.6902 -4.4141 35 1 9.5447 -1.4852 -4.1718 36 1 9.7690 -3.9171 -3.7409 37 1 8.0174 -4.1215 -3.9833 38 1 8.2392 -3.2664 -6.3007 39 1 9.9906 -3.0623 -6.0576 40 1 9.7353 -4.7549 -9.3184 41 1 6.6831 -1.6674 1.0104 42 1 6.2990 -1.9615 -0.7183 43 1 4.1115 -2.1448 0.0099 44 1 1.6519 -2.1332 0.0079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888815801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = -34.306790 kcal Electronic energy + Delta-G solvation = -24807.362775 eV Core-core repulsion = 21110.840968 eV Total energy + Delta-G solvation = -3696.521807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94932 -40.40811 -39.65445 -37.02508 -35.32148 -35.17587 -33.38532 -32.61993 -32.23747 -31.61150 -28.69633 -27.97255 -26.10005 -24.57006 -23.38433 -23.31833 -22.37548 -21.57794 -20.86057 -18.90646 -18.53042 -18.17349 -17.06777 -16.86336 -16.75765 -16.44968 -16.28227 -16.11145 -15.86667 -15.42261 -15.12179 -14.73772 -14.42938 -14.39450 -14.24305 -14.12216 -13.76556 -13.70647 -13.47212 -13.13368 -13.03925 -12.88790 -12.77358 -12.56527 -12.36048 -12.30267 -12.12226 -11.80744 -11.69770 -11.67075 -11.45031 -11.20625 -10.56988 -10.56141 -10.23246 -9.95723 -9.40862 -8.19945 -6.31606 -0.34374 0.42093 1.15581 1.33075 1.42249 1.42435 1.55575 1.84342 2.06748 2.42139 2.79524 2.87967 3.14255 3.28116 3.31158 3.58213 3.91259 3.95974 4.01709 4.06234 4.12694 4.17850 4.37720 4.39881 4.46783 4.50566 4.51563 4.62432 4.80969 4.85945 4.88378 4.91042 4.93074 5.09779 5.15956 5.26341 5.33238 5.39838 5.40221 5.51549 5.62198 5.69081 5.83571 5.96066 6.19494 6.21963 6.45273 6.86658 7.10298 7.38413 8.92502 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002368 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.267641 B =11823.694643 C =13233.357750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.075 4.075 6 C 0.130 3.870 7 N -0.326 5.326 8 O -0.198 6.198 9 C 0.026 3.974 10 H 0.185 0.815 11 C 0.487 3.513 12 O -0.580 6.580 13 N -0.700 5.700 14 C 0.129 3.871 15 C -0.099 4.099 16 C 0.021 3.979 17 C -0.537 4.537 18 H 0.070 0.930 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.255 1.255 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.129 4.129 26 C -0.076 4.076 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.422 0.578 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.075 0.925 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.263 0.737 41 H 0.163 0.837 42 H 0.128 0.872 43 H 0.158 0.842 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 2.725 25.102 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.151 4.151 4 C -0.114 4.114 5 C -0.076 4.076 6 C -0.059 4.059 7 N -0.068 5.068 8 O -0.214 6.214 9 C -0.036 4.036 10 H 0.202 0.798 11 C 0.273 3.727 12 O -0.459 6.459 13 N -0.355 5.355 14 C 0.005 3.995 15 C -0.137 4.137 16 C -0.017 4.017 17 C -0.575 4.575 18 H 0.088 0.912 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.179 1.179 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.168 4.168 26 C -0.096 4.096 27 C -0.145 4.145 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.135 0.865 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.071 0.929 41 H 0.180 0.820 42 H 0.147 0.853 43 H 0.175 0.825 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.028 4.696 24.497 30.201 hybrid contribution 0.769 -1.215 -0.958 1.728 sum -16.259 3.481 23.539 28.819 Atomic orbital electron populations 1.20931 0.88951 1.04010 1.03592 1.20535 0.97905 0.92881 0.95459 1.21226 0.93077 0.99284 1.01527 1.21419 0.95222 0.97334 0.97381 1.17951 0.86486 0.95492 1.07694 1.24792 0.95101 0.93320 0.92660 1.78465 0.88954 1.23623 1.15784 1.91292 1.16727 1.27589 1.85814 1.23978 1.03038 0.85325 0.91296 0.79799 1.21575 0.76367 0.83345 0.91417 1.90742 1.51795 1.38220 1.65109 1.45841 1.71593 1.09066 1.08952 1.21261 0.99947 0.98285 0.80013 1.21588 1.02267 0.92699 0.97113 1.18967 0.94849 0.95952 0.91904 1.21708 1.48307 0.94053 0.93443 0.91161 1.26062 0.95116 1.02387 0.96803 1.70128 1.50988 1.35179 1.01468 0.85347 0.77538 0.79210 0.78625 1.17866 1.20659 1.20798 1.23183 0.87663 0.97475 1.08461 1.21544 0.94878 0.96892 0.96284 1.21370 0.93594 0.98985 1.00600 0.89559 0.90826 0.90096 0.83996 0.86542 0.74016 0.93548 0.93595 0.90940 0.90669 0.99145 0.99265 0.92872 0.81994 0.85340 0.82486 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.00 71.24 0.71 -0.10 16 2 C -0.07 -0.82 5.89 -19.81 -0.12 -0.94 16 3 C -0.13 -2.04 9.68 22.23 0.22 -1.83 16 4 C -0.09 -1.89 9.69 22.53 0.22 -1.67 16 5 C -0.07 -1.45 5.87 -20.13 -0.12 -1.57 16 6 C 0.13 2.88 7.15 45.76 0.33 3.20 16 7 N -0.33 -9.77 12.12 -42.23 -0.51 -10.28 16 8 O -0.20 -6.04 11.82 -20.32 -0.24 -6.28 16 9 C 0.03 0.53 4.22 30.50 0.13 0.66 16 10 H 0.19 2.08 8.14 -2.39 -0.02 2.06 16 11 C 0.49 14.46 7.16 87.66 0.63 15.09 16 12 O -0.58 -24.62 16.59 14.99 0.25 -24.37 16 13 N -0.70 -17.74 5.56 -463.06 -2.57 -20.31 16 14 C 0.13 4.46 5.67 86.38 0.49 4.95 16 15 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 16 C 0.02 1.07 4.97 29.85 0.15 1.22 16 17 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 19 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 20 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 21 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.13 -1.76 5.83 30.81 0.18 -1.58 16 26 C -0.08 -1.00 9.61 22.53 0.22 -0.78 16 27 C -0.13 -1.43 9.68 22.23 0.22 -1.22 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.46 8.08 -2.39 -0.02 0.44 16 30 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.12 2.61 7.84 -2.91 -0.02 2.59 16 33 H 0.42 6.75 8.47 -92.71 -0.79 5.96 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.13 1.31 7.72 -2.39 -0.02 1.29 16 43 H 0.16 1.11 7.37 -2.91 -0.02 1.09 16 44 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -84.07 378.50 3.56 -80.51 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.22 Total: 9.41 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.10 Total: -16.96 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.80 Total: -87.43 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: 0.01 Total: -30.66 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -84.07 3.56 -80.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888815801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.208 kcal (2) G-P(sol) polarization free energy of solvation -84.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds