Wall clock time and date at job start Tue Mar 31 2020 11:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86792 * 119.99833 * 2 1 4 4 H 1.48498 * 109.47350 * 240.00548 * 3 2 1 5 5 H 1.48502 * 109.47249 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47219 * 120.00290 * 3 2 1 7 7 C 1.40027 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99503 * 196.94844 * 7 2 1 9 9 C 1.41542 * 120.00381 * 16.94761 * 7 2 1 10 10 C 1.41179 * 120.99433 * 203.59608 * 9 7 2 11 11 C 1.37594 * 119.01207 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11000 * 0.02562 * 11 10 9 13 13 C 1.32464 * 122.23205 * 359.97438 * 12 11 10 14 14 N 1.39470 * 119.58261 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99614 * 5.22966 * 14 13 12 16 16 O 1.21273 * 119.99764 * 355.14926 * 15 14 13 17 17 C 1.50702 * 119.99875 * 175.14717 * 15 14 13 18 18 C 1.52998 * 109.46876 * 180.02562 * 17 15 14 19 19 H 1.09003 * 110.65039 * 52.11000 * 18 17 15 20 20 C 1.55044 * 110.58996 * 174.99808 * 18 17 15 21 21 C 1.54974 * 102.30517 * 155.28780 * 20 18 17 22 22 C 1.53525 * 103.89336 * 339.01884 * 21 20 18 23 23 C 1.53155 * 114.89308 * 228.12587 * 22 21 20 24 24 C 1.53893 * 86.89528 * 218.42232 * 23 22 21 25 25 C 1.53146 * 114.90072 * 128.50294 * 22 21 20 26 26 O 1.43064 * 108.05881 * 358.30780 * 22 21 20 27 27 C 1.38601 * 120.84151 * 0.25793 * 13 12 11 28 28 H 0.96996 * 120.00107 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.49167 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.44281 * 180.02562 * 11 10 9 31 31 H 0.96995 * 120.00442 * 185.23262 * 14 13 12 32 32 H 1.09003 * 109.46658 * 59.99956 * 17 15 14 33 33 H 1.09000 * 109.46910 * 300.00259 * 17 15 14 34 34 H 1.09007 * 110.87463 * 37.03523 * 20 18 17 35 35 H 1.08998 * 110.87667 * 273.55066 * 20 18 17 36 36 H 1.09004 * 110.53862 * 97.61099 * 21 20 18 37 37 H 1.08997 * 110.54877 * 220.41453 * 21 20 18 38 38 H 1.08997 * 113.64163 * 332.92237 * 23 22 21 39 39 H 1.08999 * 113.64702 * 103.91880 * 23 22 21 40 40 H 1.09001 * 113.59760 * 270.38637 * 24 23 22 41 41 H 1.09000 * 113.67020 * 139.55213 * 24 23 22 42 42 H 1.08994 * 113.64573 * 256.06895 * 25 22 21 43 43 H 1.08996 * 113.64021 * 26.98189 * 25 22 21 44 44 H 1.08004 * 120.60402 * 179.74061 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0524 -1.2331 0.2721 9 6 1.3460 -2.4117 -0.3584 10 6 1.8235 -3.6650 0.0826 11 6 1.1489 -4.8049 -0.2901 12 7 0.0698 -4.7419 -1.0491 13 6 -0.4186 -3.5917 -1.4888 14 7 -1.5616 -3.5895 -2.2879 15 6 -2.2228 -4.7407 -2.5214 16 8 -1.7759 -5.7906 -2.1106 17 6 -3.5172 -4.7230 -3.2929 18 6 -4.0572 -6.1492 -3.4156 19 1 -4.1086 -6.6263 -2.4368 20 6 -5.4507 -6.1480 -4.0954 21 6 -5.5253 -7.5738 -4.6982 22 6 -4.0572 -8.0138 -4.7868 23 6 -3.6438 -8.6124 -6.1346 24 6 -2.7897 -9.6115 -5.3342 25 6 -3.7534 -9.3766 -4.1575 26 8 -3.2416 -6.9334 -4.3240 27 6 0.1953 -2.3907 -1.1697 28 1 -0.4850 0.8400 0.0004 29 1 2.7055 -3.7281 0.7025 30 1 1.5078 -5.7672 0.0437 31 1 -1.8808 -2.7597 -2.6756 32 1 -3.3416 -4.3136 -4.2877 33 1 -4.2444 -4.1033 -2.7682 34 1 -5.4999 -5.3920 -4.8791 35 1 -6.2412 -5.9951 -3.3606 36 1 -6.0847 -8.2385 -4.0398 37 1 -5.9770 -7.5467 -5.6898 38 1 -4.4668 -9.0774 -6.6772 39 1 -3.0573 -7.9331 -6.7531 40 1 -1.7747 -9.2629 -5.1432 41 1 -2.8210 -10.6275 -5.7277 42 1 -3.2547 -9.3102 -3.1906 43 1 -4.6074 -10.0538 -4.1482 44 1 -0.2038 -1.4555 -1.5337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889555418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:20 Heat of formation + Delta-G solvation = -26.334261 kcal Electronic energy + Delta-G solvation = -25946.927859 eV Core-core repulsion = 22250.751768 eV Total energy + Delta-G solvation = -3696.176092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54909 -39.41295 -37.78136 -36.27817 -34.27000 -33.65737 -32.35095 -31.00529 -30.45990 -28.48116 -26.01936 -25.90765 -25.69752 -22.71385 -21.93548 -21.57556 -20.90103 -19.54027 -19.33592 -17.62119 -17.06208 -16.42133 -15.91503 -15.55025 -15.24014 -15.08524 -14.85391 -14.29247 -14.19150 -14.00915 -13.65649 -13.33143 -13.19163 -12.79626 -12.66133 -12.53817 -12.50339 -12.21177 -11.83853 -11.61525 -11.45211 -11.29730 -11.21259 -11.02846 -10.88397 -10.81809 -10.52751 -10.29475 -10.21194 -10.12909 -9.68322 -9.44810 -9.32599 -9.24619 -7.98320 -7.66984 -6.99499 -6.79495 -4.60009 2.61723 2.81074 3.00524 3.03675 3.23779 3.51089 3.63673 3.69378 3.84924 4.34905 4.42720 4.56266 4.68145 4.73034 4.78876 4.93386 4.98450 5.09738 5.21050 5.34268 5.42874 5.51430 5.59443 5.62614 5.66691 5.70663 5.75121 5.78444 5.84536 6.03122 6.05665 6.06488 6.21831 6.26749 6.62386 6.69509 6.83590 6.96946 7.08351 7.11823 7.42244 7.50192 7.80629 7.97255 8.25550 8.45564 8.73047 8.75813 8.97874 9.73953 10.06945 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002687 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.338375 B =10418.602366 C =11083.073487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.286 4.286 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.339 3.661 14 N -0.662 5.662 15 C 0.497 3.503 16 O -0.470 6.470 17 C -0.137 4.137 18 C 0.097 3.903 19 H 0.080 0.920 20 C -0.152 4.152 21 C -0.139 4.139 22 C 0.082 3.918 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.156 4.156 26 O -0.334 6.334 27 C -0.246 4.246 28 H 0.282 0.718 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.406 0.594 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.441 -8.042 -9.992 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.310 4.310 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.114 3.886 14 N -0.308 5.308 15 C 0.281 3.719 16 O -0.339 6.339 17 C -0.177 4.177 18 C 0.039 3.961 19 H 0.098 0.902 20 C -0.190 4.190 21 C -0.176 4.176 22 C 0.042 3.958 23 C -0.171 4.171 24 C -0.172 4.172 25 C -0.194 4.194 26 O -0.253 6.253 27 C -0.271 4.271 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.241 0.759 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.606 -9.443 -9.993 18.653 hybrid contribution 0.408 2.116 0.214 2.166 sum -12.198 -7.327 -9.779 17.266 Atomic orbital electron populations 1.69778 1.07689 1.29453 1.34440 1.25953 0.94763 1.01458 0.91879 0.86315 0.80141 0.79867 0.80123 1.18714 1.20270 1.18879 1.19541 0.97918 0.90752 1.40559 0.90034 1.17553 0.89857 0.92238 0.86803 1.21888 1.05298 0.93907 1.09924 1.21764 0.91000 0.96780 0.93985 1.67237 1.15445 1.26506 1.18076 1.18205 0.87270 0.90756 0.92367 1.43482 1.26551 1.10687 1.50115 1.20500 0.85885 0.84285 0.81241 1.90794 1.66321 1.29514 1.47298 1.21766 0.96508 0.97196 1.02254 1.22951 0.88152 0.90782 0.94218 0.90181 1.23221 0.97623 0.97474 1.00699 1.22812 0.96388 0.96581 1.01851 1.22603 0.89408 0.88140 0.95682 1.23080 1.00131 0.98280 0.95572 1.22783 0.99053 0.98842 0.96572 1.23395 0.99828 0.96561 0.99608 1.88977 1.35718 1.38878 1.61704 1.21529 1.02665 0.95540 1.07367 0.90702 0.88052 0.85974 0.75943 0.88384 0.87708 0.90374 0.90158 0.90568 0.90452 0.89313 0.90700 0.89654 0.91668 0.90452 0.89728 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.45 10.93 55.55 0.61 -18.84 16 2 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 3 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.84 9.12 -37.65 -0.34 -12.18 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.14 3.83 5.60 -106.55 -0.60 3.24 16 10 C -0.29 -7.18 9.90 -38.70 -0.38 -7.56 16 11 C 0.12 2.94 11.15 -17.68 -0.20 2.74 16 12 N -0.55 -14.52 7.85 -12.52 -0.10 -14.62 16 13 C 0.34 8.39 7.42 -154.71 -1.15 7.25 16 14 N -0.66 -13.21 5.39 -11.49 -0.06 -13.27 16 15 C 0.50 9.54 7.74 -10.98 -0.08 9.45 16 16 O -0.47 -11.12 13.93 2.37 0.03 -11.08 16 17 C -0.14 -1.79 5.47 -27.88 -0.15 -1.94 16 18 C 0.10 1.28 2.79 -25.65 -0.07 1.21 16 19 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 20 C -0.15 -1.43 6.58 -24.61 -0.16 -1.59 16 21 C -0.14 -1.26 6.48 -25.42 -0.16 -1.42 16 22 C 0.08 0.96 1.39 -90.19 -0.13 0.84 16 23 C -0.13 -1.36 7.47 -26.19 -0.20 -1.56 16 24 C -0.14 -1.48 8.08 -25.80 -0.21 -1.68 16 25 C -0.16 -1.76 7.47 -26.19 -0.20 -1.95 16 26 O -0.33 -5.17 10.69 -38.43 -0.41 -5.58 16 27 C -0.25 -6.31 8.62 -38.48 -0.33 -6.64 16 28 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 29 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 31 H 0.41 6.56 8.70 -40.82 -0.36 6.21 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.66 8.05 -51.92 -0.42 0.24 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 38 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.13 3.21 6.21 -52.48 -0.33 2.88 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -32.76 362.33 -10.48 -43.24 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -6.53 Total: 11.76 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -4.45 Total: -9.99 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.45 Total: -46.73 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.38 Total: -16.66 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.76 -10.48 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.901 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds