Wall clock time and date at job start Tue Mar 31 2020 11:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86792 * 119.99833 * 2 1 4 4 H 1.48498 * 109.47350 * 240.00548 * 3 2 1 5 5 H 1.48502 * 109.47249 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47219 * 120.00290 * 3 2 1 7 7 C 1.40027 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99503 * 196.94844 * 7 2 1 9 9 C 1.41542 * 120.00381 * 16.94761 * 7 2 1 10 10 C 1.41179 * 120.99433 * 203.59608 * 9 7 2 11 11 C 1.37594 * 119.01207 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11000 * 0.02562 * 11 10 9 13 13 C 1.32464 * 122.23205 * 359.97438 * 12 11 10 14 14 N 1.39470 * 119.58261 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99614 * 5.22966 * 14 13 12 16 16 O 1.21273 * 119.99764 * 355.14926 * 15 14 13 17 17 C 1.50702 * 119.99875 * 175.14717 * 15 14 13 18 18 C 1.52998 * 109.46876 * 180.02562 * 17 15 14 19 19 H 1.09003 * 110.65039 * 52.11000 * 18 17 15 20 20 C 1.55044 * 110.58996 * 174.99808 * 18 17 15 21 21 C 1.54974 * 102.30517 * 155.28780 * 20 18 17 22 22 C 1.53525 * 103.89336 * 339.01884 * 21 20 18 23 23 C 1.53155 * 114.89308 * 228.12587 * 22 21 20 24 24 C 1.53893 * 86.89528 * 218.42232 * 23 22 21 25 25 C 1.53146 * 114.90072 * 128.50294 * 22 21 20 26 26 O 1.43064 * 108.05881 * 358.30780 * 22 21 20 27 27 C 1.38601 * 120.84151 * 0.25793 * 13 12 11 28 28 H 0.96996 * 120.00107 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.49167 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.44281 * 180.02562 * 11 10 9 31 31 H 0.96995 * 120.00442 * 185.23262 * 14 13 12 32 32 H 1.09003 * 109.46658 * 59.99956 * 17 15 14 33 33 H 1.09000 * 109.46910 * 300.00259 * 17 15 14 34 34 H 1.09007 * 110.87463 * 37.03523 * 20 18 17 35 35 H 1.08998 * 110.87667 * 273.55066 * 20 18 17 36 36 H 1.09004 * 110.53862 * 97.61099 * 21 20 18 37 37 H 1.08997 * 110.54877 * 220.41453 * 21 20 18 38 38 H 1.08997 * 113.64163 * 332.92237 * 23 22 21 39 39 H 1.08999 * 113.64702 * 103.91880 * 23 22 21 40 40 H 1.09001 * 113.59760 * 270.38637 * 24 23 22 41 41 H 1.09000 * 113.67020 * 139.55213 * 24 23 22 42 42 H 1.08994 * 113.64573 * 256.06895 * 25 22 21 43 43 H 1.08996 * 113.64021 * 26.98189 * 25 22 21 44 44 H 1.08004 * 120.60402 * 179.74061 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0524 -1.2331 0.2721 9 6 1.3460 -2.4117 -0.3584 10 6 1.8235 -3.6650 0.0826 11 6 1.1489 -4.8049 -0.2901 12 7 0.0698 -4.7419 -1.0491 13 6 -0.4186 -3.5917 -1.4888 14 7 -1.5616 -3.5895 -2.2879 15 6 -2.2228 -4.7407 -2.5214 16 8 -1.7759 -5.7906 -2.1106 17 6 -3.5172 -4.7230 -3.2929 18 6 -4.0572 -6.1492 -3.4156 19 1 -4.1086 -6.6263 -2.4368 20 6 -5.4507 -6.1480 -4.0954 21 6 -5.5253 -7.5738 -4.6982 22 6 -4.0572 -8.0138 -4.7868 23 6 -3.6438 -8.6124 -6.1346 24 6 -2.7897 -9.6115 -5.3342 25 6 -3.7534 -9.3766 -4.1575 26 8 -3.2416 -6.9334 -4.3240 27 6 0.1953 -2.3907 -1.1697 28 1 -0.4850 0.8400 0.0004 29 1 2.7055 -3.7281 0.7025 30 1 1.5078 -5.7672 0.0437 31 1 -1.8808 -2.7597 -2.6756 32 1 -3.3416 -4.3136 -4.2877 33 1 -4.2444 -4.1033 -2.7682 34 1 -5.4999 -5.3920 -4.8791 35 1 -6.2412 -5.9951 -3.3606 36 1 -6.0847 -8.2385 -4.0398 37 1 -5.9770 -7.5467 -5.6898 38 1 -4.4668 -9.0774 -6.6772 39 1 -3.0573 -7.9331 -6.7531 40 1 -1.7747 -9.2629 -5.1432 41 1 -2.8210 -10.6275 -5.7277 42 1 -3.2547 -9.3102 -3.1906 43 1 -4.6074 -10.0538 -4.1482 44 1 -0.2038 -1.4555 -1.5337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889555418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:18 Heat of formation + Delta-G solvation = -45.893451 kcal Electronic energy + Delta-G solvation = -25947.776010 eV Core-core repulsion = 22250.751768 eV Total energy + Delta-G solvation = -3697.024242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55926 -40.99159 -39.51857 -37.27624 -36.10615 -35.44231 -33.30301 -32.51909 -31.97381 -30.20541 -27.92648 -26.87096 -26.62947 -24.01195 -23.78881 -22.74905 -22.06649 -21.14371 -20.21827 -19.45509 -18.49430 -17.68950 -17.27890 -16.97191 -16.66767 -16.25860 -16.08432 -15.89656 -15.73774 -15.53543 -14.97655 -14.64678 -14.38003 -14.27632 -14.19480 -14.08693 -13.36343 -13.24734 -13.15422 -12.94062 -12.89142 -12.65339 -12.52179 -12.25107 -12.06763 -11.95119 -11.81089 -11.69906 -11.47650 -11.35556 -11.14087 -11.00970 -10.91749 -10.40609 -9.96485 -9.57735 -8.86610 -8.65266 -6.57531 0.75244 0.99640 1.40646 1.51576 1.57352 1.93913 2.17901 2.20199 2.74274 2.80312 3.51022 3.62246 3.63562 3.73714 3.75850 3.90458 3.99208 4.07219 4.14517 4.18350 4.38436 4.51067 4.54883 4.68300 4.76963 4.78860 4.82368 4.86348 4.89719 4.92681 4.94970 4.99817 5.05749 5.08087 5.16588 5.21072 5.23436 5.36944 5.41139 5.47278 5.65641 5.89331 6.14334 6.18916 6.47772 6.62647 6.78713 6.81793 7.37285 7.85792 8.25323 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002687 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.338375 B =10418.602366 C =11083.073487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.301 4.301 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.334 3.666 14 N -0.656 5.656 15 C 0.489 3.511 16 O -0.521 6.521 17 C -0.122 4.122 18 C 0.088 3.912 19 H 0.052 0.948 20 C -0.140 4.140 21 C -0.133 4.133 22 C 0.065 3.935 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.157 4.157 26 O -0.374 6.374 27 C -0.262 4.262 28 H 0.294 0.706 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.423 0.577 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.113 0.887 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 -6.833 -11.385 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.325 4.325 11 C -0.042 4.042 12 N -0.302 5.302 13 C 0.108 3.892 14 N -0.304 5.304 15 C 0.277 3.723 16 O -0.393 6.393 17 C -0.162 4.162 18 C 0.030 3.970 19 H 0.070 0.930 20 C -0.178 4.178 21 C -0.171 4.171 22 C 0.025 3.975 23 C -0.160 4.160 24 C -0.178 4.178 25 C -0.195 4.195 26 O -0.294 6.294 27 C -0.288 4.288 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.163 0.837 31 H 0.260 0.740 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.131 0.869 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.817 -8.228 -11.403 20.427 hybrid contribution 1.095 1.689 0.685 2.126 sum -13.722 -6.539 -10.719 18.600 Atomic orbital electron populations 1.69804 1.09055 1.31178 1.33450 1.26835 0.95592 1.04587 0.90721 0.85158 0.78781 0.75127 0.80101 1.18453 1.18763 1.18437 1.19844 0.98302 0.91728 1.41729 0.89836 1.18001 0.90704 0.93256 0.87457 1.22069 1.06060 0.93760 1.10614 1.22187 0.90693 0.97825 0.93500 1.67364 1.16313 1.27309 1.19168 1.18505 0.88280 0.90179 0.92268 1.43571 1.25269 1.12176 1.49339 1.21678 0.87201 0.82994 0.80439 1.90768 1.67946 1.31220 1.49411 1.21840 0.93426 0.98294 1.02615 1.23034 0.90491 0.90108 0.93332 0.92970 1.23197 0.95139 0.98234 1.01215 1.22836 0.94365 0.96429 1.03426 1.22915 0.90943 0.87376 0.96263 1.23111 1.00593 0.97461 0.94837 1.22763 0.97547 1.00344 0.97169 1.23460 1.00613 0.97614 0.97818 1.88941 1.38013 1.40302 1.62119 1.21524 1.03227 0.95756 1.08265 0.89540 0.86707 0.83680 0.73953 0.86011 0.84016 0.88718 0.88150 0.89469 0.88169 0.86044 0.91840 0.92885 0.89509 0.93829 0.86877 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.76 10.93 21.84 0.24 -39.52 16 2 C 0.04 1.93 5.20 85.29 0.44 2.38 16 3 Si 0.99 35.96 29.59 68.60 2.03 37.99 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.49 -25.56 9.12 23.52 0.21 -25.35 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 9 C 0.11 6.26 5.60 -21.11 -0.12 6.14 16 10 C -0.30 -15.58 9.90 22.84 0.23 -15.35 16 11 C 0.11 5.70 11.15 84.50 0.94 6.64 16 12 N -0.58 -31.60 7.85 -193.53 -1.52 -33.12 16 13 C 0.33 17.02 7.42 132.76 0.98 18.00 16 14 N -0.66 -26.45 5.39 -308.65 -1.66 -28.12 16 15 C 0.49 19.03 7.74 87.66 0.68 19.71 16 16 O -0.52 -25.72 13.93 0.05 0.00 -25.72 16 17 C -0.12 -3.01 5.47 29.85 0.16 -2.84 16 18 C 0.09 2.26 2.79 31.29 0.09 2.35 16 19 H 0.05 1.59 7.89 -2.39 -0.02 1.58 16 20 C -0.14 -2.17 6.58 31.97 0.21 -1.96 16 21 C -0.13 -2.00 6.48 31.45 0.20 -1.79 16 22 C 0.06 1.46 1.39 -10.52 -0.01 1.44 16 23 C -0.12 -2.32 7.47 30.95 0.23 -2.09 16 24 C -0.14 -3.09 8.08 31.20 0.25 -2.84 16 25 C -0.16 -3.53 7.47 30.95 0.23 -3.30 16 26 O -0.37 -11.70 10.69 -145.92 -1.56 -13.26 16 27 C -0.26 -13.85 8.62 22.99 0.20 -13.66 16 28 H 0.29 12.81 8.29 -92.71 -0.77 12.04 16 29 H 0.11 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.15 6.47 8.06 -2.91 -0.02 6.44 16 31 H 0.42 13.51 8.70 -92.71 -0.81 12.70 16 32 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 1.18 8.05 -2.38 -0.02 1.17 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.12 7.89 -2.39 -0.02 1.10 16 37 H 0.10 1.07 7.93 -2.39 -0.02 1.05 16 38 H 0.12 1.48 8.11 -2.39 -0.02 1.46 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 1.82 8.08 -2.39 -0.02 1.80 16 44 H 0.13 6.49 6.21 -2.91 -0.02 6.47 16 Total: -1.00 -75.45 362.33 2.67 -72.78 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.21 Total: 41.48 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.93 Total: -12.51 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -2.94 Total: -100.76 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.56 Total: -38.98 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -75.45 2.67 -72.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.886 kcal (2) G-P(sol) polarization free energy of solvation -75.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds