Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47148 * 239.99707 * 3 2 1 5 5 H 1.48497 * 109.47533 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47207 * 120.00084 * 3 2 1 7 7 C 1.38900 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99766 * 170.67859 * 7 2 1 9 9 N 1.37209 * 119.99910 * 350.67890 * 7 2 1 10 10 C 1.34773 * 120.00176 * 181.12246 * 9 7 2 11 11 O 1.21274 * 120.00427 * 174.98904 * 10 9 7 12 12 C 1.50703 * 119.99904 * 354.99067 * 10 9 7 13 13 C 1.52997 * 109.47267 * 180.02562 * 12 10 9 14 14 H 1.08991 * 110.27065 * 52.92266 * 13 12 10 15 15 C 1.55001 * 110.30356 * 175.00174 * 13 12 10 16 16 C 1.55436 * 101.05256 * 155.03940 * 15 13 12 17 17 C 1.53909 * 102.02091 * 326.37132 * 16 15 13 18 18 C 1.53193 * 114.63690 * 151.40957 * 17 16 15 19 19 C 1.53889 * 86.91481 * 90.92767 * 18 17 16 20 20 C 1.53203 * 114.55646 * 250.63927 * 17 16 15 21 21 O 1.42620 * 108.28690 * 20.97283 * 17 16 15 22 22 C 1.39425 * 119.99863 * 1.12342 * 9 7 2 23 23 C 1.39074 * 119.69537 * 268.37383 * 22 9 7 24 24 C 1.38387 * 119.09552 * 179.77437 * 23 22 9 25 25 C 1.38833 * 118.49040 * 0.49461 * 24 23 22 26 26 C 1.38143 * 119.31554 * 359.74863 * 25 24 23 27 27 N 1.31884 * 120.84784 * 0.02562 * 26 25 24 28 28 H 0.97002 * 119.99767 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47160 * 59.99626 * 12 10 9 30 30 H 1.09004 * 109.46711 * 299.99986 * 12 10 9 31 31 H 1.08998 * 111.11063 * 272.99186 * 15 13 12 32 32 H 1.08997 * 111.11448 * 37.08158 * 15 13 12 33 33 H 1.09002 * 110.91949 * 84.53367 * 16 15 13 34 34 H 1.09003 * 110.91697 * 208.15730 * 16 15 13 35 35 H 1.09001 * 113.64256 * 205.42936 * 18 17 16 36 36 H 1.09002 * 113.64311 * 336.42232 * 18 17 16 37 37 H 1.09004 * 113.60031 * 270.42986 * 19 18 17 38 38 H 1.08993 * 113.67638 * 139.58988 * 19 18 17 39 39 H 1.08998 * 113.64366 * 23.50891 * 20 17 16 40 40 H 1.09007 * 113.63756 * 154.40181 * 20 17 16 41 41 H 1.07991 * 120.45423 * 0.02562 * 23 22 9 42 42 H 1.07999 * 120.74947 * 180.26110 * 24 23 22 43 43 H 1.08001 * 120.34184 * 179.72434 * 25 24 23 44 44 H 1.08002 * 119.57543 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0778 -1.2090 -0.1520 9 7 1.3361 -2.3834 0.1914 10 6 2.0129 -3.5487 0.2135 11 8 1.4333 -4.5818 0.4731 12 6 3.4900 -3.5678 -0.0845 13 6 4.0100 -5.0039 0.0059 14 1 3.4103 -5.6629 -0.6218 15 6 5.4993 -5.0645 -0.4193 16 6 5.9734 -6.3373 0.3365 17 6 5.1258 -6.2824 1.6199 18 6 4.8217 -7.6484 2.2433 19 6 6.1067 -7.4643 3.0698 20 6 5.9145 -5.9481 2.8901 21 8 3.9897 -5.4570 1.3709 22 6 -0.0475 -2.3775 0.3636 23 6 -0.5819 -2.2995 1.6452 24 6 -1.9569 -2.2898 1.8014 25 6 -2.7530 -2.3691 0.6667 26 6 -2.1539 -2.4495 -0.5755 27 7 -0.8404 -2.4521 -0.6939 28 1 -0.4850 0.8401 0.0004 29 1 4.0149 -2.9447 0.6395 30 1 3.6630 -3.1818 -1.0891 31 1 5.5948 -5.1899 -1.4978 32 1 6.0408 -4.1817 -0.0796 33 1 5.7514 -7.2365 -0.2382 34 1 7.0368 -6.2784 0.5689 35 1 3.9131 -7.6617 2.8452 36 1 4.8731 -8.4740 1.5335 37 1 7.0000 -7.8519 2.5800 38 1 6.0134 -7.7964 4.1037 39 1 6.8426 -5.4094 2.6992 40 1 5.3100 -5.4870 3.6712 41 1 0.0671 -2.2432 2.5064 42 1 -2.4006 -2.2257 2.7840 43 1 -3.8294 -2.3683 0.7543 44 1 -2.7692 -2.5118 -1.4609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892474190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = -5.266966 kcal Electronic energy + Delta-G solvation = -27007.548315 eV Core-core repulsion = 23312.285769 eV Total energy + Delta-G solvation = -3695.262545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32383 -39.50121 -37.85227 -36.24457 -34.75237 -32.07488 -31.65356 -31.20266 -30.51369 -28.92648 -25.71476 -25.38244 -24.97961 -22.81651 -22.33856 -22.14852 -20.82065 -19.19255 -18.75863 -17.89963 -16.68933 -16.15928 -15.69844 -15.48588 -15.20397 -14.95321 -14.71856 -14.35928 -14.28981 -13.73607 -13.41873 -13.17912 -12.86673 -12.58830 -12.27477 -12.14320 -12.08510 -11.98362 -11.71419 -11.47728 -11.29639 -11.22402 -11.07392 -10.95639 -10.90560 -10.64736 -10.57996 -10.47554 -10.31754 -10.19755 -9.67686 -8.98910 -8.70467 -8.62421 -8.40578 -7.88112 -7.80995 -6.28070 -3.99436 2.38324 2.52111 3.10124 3.16997 3.18796 3.77663 3.99226 4.06059 4.45780 4.54529 4.59129 4.71598 4.82466 5.00973 5.04126 5.07804 5.17683 5.25092 5.46867 5.65308 5.67492 5.72994 5.74491 5.80178 5.81928 5.85165 5.88706 5.90254 6.02170 6.04478 6.11952 6.14892 6.24168 6.33960 6.38791 6.41889 6.59851 6.60646 6.79423 7.19413 7.19567 7.30744 7.49278 7.58252 7.86716 8.39729 9.00726 9.27967 9.43139 9.80653 10.63220 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.004208 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.579356 B = 6651.841707 C = 7760.297419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.034 3.966 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.108 0.892 9 N -0.419 5.419 10 C 0.481 3.519 11 O -0.581 6.581 12 C -0.119 4.119 13 C 0.100 3.900 14 H 0.075 0.925 15 C -0.153 4.153 16 C -0.128 4.128 17 C 0.080 3.920 18 C -0.141 4.141 19 C -0.140 4.140 20 C -0.140 4.140 21 O -0.341 6.341 22 C 0.471 3.529 23 C -0.154 4.154 24 C -0.075 4.075 25 C -0.212 4.212 26 C 0.116 3.884 27 N -0.478 5.478 28 H 0.273 0.727 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 -7.406 2.306 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.126 0.874 9 N -0.138 5.138 10 C 0.270 3.730 11 O -0.464 6.464 12 C -0.159 4.159 13 C 0.042 3.958 14 H 0.093 0.907 15 C -0.191 4.191 16 C -0.166 4.166 17 C 0.040 3.960 18 C -0.179 4.179 19 C -0.178 4.178 20 C -0.177 4.177 21 O -0.259 6.259 22 C 0.245 3.755 23 C -0.176 4.176 24 C -0.102 4.102 25 C -0.232 4.232 26 C -0.043 4.043 27 N -0.190 5.190 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.380 -7.731 1.744 11.535 hybrid contribution 0.027 1.323 0.602 1.454 sum 8.407 -6.409 2.346 10.829 Atomic orbital electron populations 1.69511 1.05704 1.27499 1.47118 1.25238 0.95625 0.99832 0.96395 0.85918 0.78851 0.80574 0.78896 1.19792 1.20879 1.19802 1.19691 0.93204 0.81962 1.51358 0.87431 1.41279 1.02373 1.06602 1.63583 1.19956 0.88992 0.82555 0.81510 1.90598 1.70497 1.32337 1.52969 1.21596 0.94643 0.95941 1.03743 1.22755 0.94031 0.95111 0.83881 0.90744 1.23369 0.96538 0.98163 1.00999 1.22819 0.99830 0.98770 0.95183 1.23087 0.87225 0.91610 0.94112 1.23310 0.98466 0.96708 0.99394 1.22691 0.97962 0.96678 1.00443 1.23283 0.99855 0.96292 0.98283 1.88561 1.43053 1.66240 1.28069 1.17343 0.84286 0.86343 0.87577 1.21636 0.95122 1.03092 0.97767 1.21056 0.93326 0.97853 0.97916 1.21644 0.99450 1.07879 0.94256 1.22069 0.90392 0.95955 0.95856 1.67106 1.04966 1.12414 1.34541 0.91465 0.88966 0.88461 0.89996 0.90209 0.90472 0.90268 0.89295 0.91445 0.90344 0.91156 0.91384 0.89347 0.86932 0.86754 0.86830 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.02 9.85 55.49 0.55 -22.48 16 2 C 0.03 0.87 5.41 -17.49 -0.09 0.77 16 3 Si 0.93 19.62 29.56 -169.99 -5.03 14.60 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.34 -8.55 9.38 -14.90 -0.14 -8.69 16 8 H 0.11 2.47 6.32 -52.49 -0.33 2.14 16 9 N -0.42 -11.03 2.74 -60.71 -0.17 -11.20 16 10 C 0.48 11.95 7.51 -10.99 -0.08 11.86 16 11 O -0.58 -15.98 15.57 -1.98 -0.03 -16.01 16 12 C -0.12 -2.31 3.82 -27.88 -0.11 -2.41 16 13 C 0.10 1.73 2.91 -25.68 -0.07 1.66 16 14 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 15 C -0.15 -1.93 6.57 -24.38 -0.16 -2.09 16 16 C -0.13 -1.47 6.13 -24.96 -0.15 -1.62 16 17 C 0.08 1.12 1.66 -89.94 -0.15 0.97 16 18 C -0.14 -1.77 7.60 -26.17 -0.20 -1.97 16 19 C -0.14 -1.43 7.88 -25.81 -0.20 -1.63 16 20 C -0.14 -1.69 7.51 -26.17 -0.20 -1.89 16 21 O -0.34 -6.40 10.36 -42.78 -0.44 -6.84 16 22 C 0.47 12.51 2.92 -154.64 -0.45 12.06 16 23 C -0.15 -3.76 9.49 -39.22 -0.37 -4.14 16 24 C -0.08 -1.57 10.17 -39.31 -0.40 -1.97 16 25 C -0.21 -4.22 10.11 -39.40 -0.40 -4.62 16 26 C 0.12 2.57 11.18 -17.56 -0.20 2.38 16 27 N -0.48 -12.57 9.69 -12.34 -0.12 -12.69 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.09 1.71 7.73 -51.93 -0.40 1.31 16 30 H 0.10 1.72 8.07 -51.93 -0.42 1.30 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 34 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.11 2.70 8.06 -52.49 -0.42 2.28 16 42 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -32.65 360.54 -9.76 -42.41 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.58 Total: 8.11 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.38 Total: -1.33 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.26 Total: -46.37 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.47 Total: -22.85 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.65 -9.76 -42.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892474190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.144 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds