Wall clock time and date at job start Tue Mar 31 2020 11:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47148 * 239.99707 * 3 2 1 5 5 H 1.48497 * 109.47533 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47207 * 120.00084 * 3 2 1 7 7 C 1.38900 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99766 * 170.67859 * 7 2 1 9 9 N 1.37209 * 119.99910 * 350.67890 * 7 2 1 10 10 C 1.34773 * 120.00176 * 181.12246 * 9 7 2 11 11 O 1.21274 * 120.00427 * 174.98904 * 10 9 7 12 12 C 1.50703 * 119.99904 * 354.99067 * 10 9 7 13 13 C 1.52997 * 109.47267 * 180.02562 * 12 10 9 14 14 H 1.08991 * 110.27065 * 52.92266 * 13 12 10 15 15 C 1.55001 * 110.30356 * 175.00174 * 13 12 10 16 16 C 1.55436 * 101.05256 * 155.03940 * 15 13 12 17 17 C 1.53909 * 102.02091 * 326.37132 * 16 15 13 18 18 C 1.53193 * 114.63690 * 151.40957 * 17 16 15 19 19 C 1.53889 * 86.91481 * 90.92767 * 18 17 16 20 20 C 1.53203 * 114.55646 * 250.63927 * 17 16 15 21 21 O 1.42620 * 108.28690 * 20.97283 * 17 16 15 22 22 C 1.39425 * 119.99863 * 1.12342 * 9 7 2 23 23 C 1.39074 * 119.69537 * 268.37383 * 22 9 7 24 24 C 1.38387 * 119.09552 * 179.77437 * 23 22 9 25 25 C 1.38833 * 118.49040 * 0.49461 * 24 23 22 26 26 C 1.38143 * 119.31554 * 359.74863 * 25 24 23 27 27 N 1.31884 * 120.84784 * 0.02562 * 26 25 24 28 28 H 0.97002 * 119.99767 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47160 * 59.99626 * 12 10 9 30 30 H 1.09004 * 109.46711 * 299.99986 * 12 10 9 31 31 H 1.08998 * 111.11063 * 272.99186 * 15 13 12 32 32 H 1.08997 * 111.11448 * 37.08158 * 15 13 12 33 33 H 1.09002 * 110.91949 * 84.53367 * 16 15 13 34 34 H 1.09003 * 110.91697 * 208.15730 * 16 15 13 35 35 H 1.09001 * 113.64256 * 205.42936 * 18 17 16 36 36 H 1.09002 * 113.64311 * 336.42232 * 18 17 16 37 37 H 1.09004 * 113.60031 * 270.42986 * 19 18 17 38 38 H 1.08993 * 113.67638 * 139.58988 * 19 18 17 39 39 H 1.08998 * 113.64366 * 23.50891 * 20 17 16 40 40 H 1.09007 * 113.63756 * 154.40181 * 20 17 16 41 41 H 1.07991 * 120.45423 * 0.02562 * 23 22 9 42 42 H 1.07999 * 120.74947 * 180.26110 * 24 23 22 43 43 H 1.08001 * 120.34184 * 179.72434 * 25 24 23 44 44 H 1.08002 * 119.57543 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0778 -1.2090 -0.1520 9 7 1.3361 -2.3834 0.1914 10 6 2.0129 -3.5487 0.2135 11 8 1.4333 -4.5818 0.4731 12 6 3.4900 -3.5678 -0.0845 13 6 4.0100 -5.0039 0.0059 14 1 3.4103 -5.6629 -0.6218 15 6 5.4993 -5.0645 -0.4193 16 6 5.9734 -6.3373 0.3365 17 6 5.1258 -6.2824 1.6199 18 6 4.8217 -7.6484 2.2433 19 6 6.1067 -7.4643 3.0698 20 6 5.9145 -5.9481 2.8901 21 8 3.9897 -5.4570 1.3709 22 6 -0.0475 -2.3775 0.3636 23 6 -0.5819 -2.2995 1.6452 24 6 -1.9569 -2.2898 1.8014 25 6 -2.7530 -2.3691 0.6667 26 6 -2.1539 -2.4495 -0.5755 27 7 -0.8404 -2.4521 -0.6939 28 1 -0.4850 0.8401 0.0004 29 1 4.0149 -2.9447 0.6395 30 1 3.6630 -3.1818 -1.0891 31 1 5.5948 -5.1899 -1.4978 32 1 6.0408 -4.1817 -0.0796 33 1 5.7514 -7.2365 -0.2382 34 1 7.0368 -6.2784 0.5689 35 1 3.9131 -7.6617 2.8452 36 1 4.8731 -8.4740 1.5335 37 1 7.0000 -7.8519 2.5800 38 1 6.0134 -7.7964 4.1037 39 1 6.8426 -5.4094 2.6992 40 1 5.3100 -5.4870 3.6712 41 1 0.0671 -2.2432 2.5064 42 1 -2.4006 -2.2257 2.7840 43 1 -3.8294 -2.3683 0.7543 44 1 -2.7692 -2.5118 -1.4609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892474190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:28 Heat of formation + Delta-G solvation = -24.463259 kcal Electronic energy + Delta-G solvation = -27008.380728 eV Core-core repulsion = 23312.285769 eV Total energy + Delta-G solvation = -3696.094959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.59681 -41.15254 -39.60412 -37.45405 -36.64475 -33.59962 -33.31273 -32.97031 -31.93581 -30.54719 -26.98816 -26.68303 -26.55714 -24.16493 -24.09820 -23.36169 -22.18954 -21.04010 -19.81027 -19.65887 -18.17944 -17.64423 -17.25561 -17.00747 -16.83295 -16.53478 -16.05540 -15.91210 -15.69309 -15.31430 -14.99477 -14.65075 -14.23722 -14.10348 -13.82996 -13.72073 -13.34103 -13.21404 -13.01780 -12.95437 -12.82093 -12.75193 -12.49543 -12.37872 -12.17469 -12.12718 -11.82378 -11.77847 -11.55790 -11.41645 -11.15355 -10.57412 -10.47014 -10.29307 -10.20618 -9.74360 -9.62136 -8.17044 -5.96563 0.62058 0.78036 1.42692 1.44735 1.55073 1.91961 2.24201 2.70794 2.93253 3.16400 3.27523 3.54744 3.65721 3.70954 3.88093 3.93063 4.03276 4.10450 4.15692 4.18668 4.22432 4.46725 4.50047 4.58300 4.60499 4.62955 4.72482 4.82678 4.85123 4.89915 4.90061 4.97159 5.01972 5.05597 5.07363 5.11641 5.26250 5.38177 5.39839 5.44974 5.47743 5.49216 5.69658 6.07370 6.40975 6.49111 7.06952 7.42318 7.58655 7.90355 8.71843 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.004208 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.579356 B = 6651.841707 C = 7760.297419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.013 4.013 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.357 4.357 8 H 0.126 0.874 9 N -0.432 5.432 10 C 0.463 3.537 11 O -0.621 6.621 12 C -0.109 4.109 13 C 0.097 3.903 14 H 0.048 0.952 15 C -0.141 4.141 16 C -0.119 4.119 17 C 0.057 3.943 18 C -0.150 4.150 19 C -0.120 4.120 20 C -0.141 4.141 21 O -0.383 6.383 22 C 0.441 3.559 23 C -0.186 4.186 24 C -0.071 4.071 25 C -0.199 4.199 26 C 0.100 3.900 27 N -0.520 5.520 28 H 0.268 0.732 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 -7.099 2.181 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.215 4.215 3 Si 0.825 3.175 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.143 0.857 9 N -0.151 5.151 10 C 0.254 3.746 11 O -0.507 6.507 12 C -0.148 4.148 13 C 0.039 3.961 14 H 0.066 0.934 15 C -0.179 4.179 16 C -0.156 4.156 17 C 0.018 3.982 18 C -0.188 4.188 19 C -0.157 4.157 20 C -0.179 4.179 21 O -0.303 6.303 22 C 0.216 3.784 23 C -0.208 4.208 24 C -0.097 4.097 25 C -0.219 4.219 26 C -0.058 4.058 27 N -0.232 5.232 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.171 0.829 43 H 0.181 0.819 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.981 -7.434 1.620 12.550 hybrid contribution -0.646 1.181 0.667 1.502 sum 9.335 -6.253 2.287 11.466 Atomic orbital electron populations 1.69724 1.07151 1.27663 1.47699 1.26210 0.96471 1.03063 0.95728 0.84842 0.77473 0.75736 0.79433 1.18549 1.21405 1.18923 1.20210 0.94227 0.82138 1.51656 0.85686 1.41644 1.02932 1.07254 1.63251 1.20966 0.91102 0.81775 0.80741 1.90541 1.71869 1.33540 1.54760 1.21612 0.90791 0.97964 1.04481 1.22713 0.96921 0.92909 0.83523 0.93390 1.23338 0.92631 0.99433 1.02474 1.22844 1.00934 0.98400 0.93400 1.23614 0.86828 0.91643 0.96159 1.23340 0.98904 0.96646 0.99905 1.22667 0.97393 0.94827 1.00804 1.23275 0.99918 0.97971 0.96716 1.88525 1.45699 1.67356 1.28683 1.17653 0.84664 0.87711 0.88402 1.21739 0.96954 1.05332 0.96796 1.21547 0.91970 0.95860 1.00332 1.22126 1.01794 1.05158 0.92806 1.22758 0.89600 0.95205 0.98275 1.67062 1.06909 1.14109 1.35167 0.92107 0.88348 0.86936 0.87862 0.89058 0.89638 0.87171 0.91915 0.90311 0.87577 0.90299 0.89452 0.91571 0.88235 0.82871 0.81909 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.24 9.85 21.65 0.21 -48.03 16 2 C -0.01 -0.66 5.41 84.91 0.46 -0.20 16 3 Si 1.00 40.22 29.56 68.60 2.03 42.25 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.36 -18.57 9.38 84.01 0.79 -17.79 16 8 H 0.13 5.79 6.32 -2.91 -0.02 5.77 16 9 N -0.43 -23.76 2.74 -464.37 -1.27 -25.03 16 10 C 0.46 24.27 7.51 87.66 0.66 24.93 16 11 O -0.62 -36.48 15.57 4.20 0.07 -36.41 16 12 C -0.11 -4.33 3.82 29.85 0.11 -4.22 16 13 C 0.10 3.44 2.91 31.28 0.09 3.53 16 14 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 15 C -0.14 -3.28 6.57 32.12 0.21 -3.07 16 16 C -0.12 -2.40 6.13 31.74 0.19 -2.21 16 17 C 0.06 1.57 1.66 -10.36 -0.02 1.55 16 18 C -0.15 -3.74 7.60 30.96 0.24 -3.50 16 19 C -0.12 -2.18 7.88 31.19 0.25 -1.94 16 20 C -0.14 -3.27 7.51 30.96 0.23 -3.04 16 21 O -0.38 -14.98 10.36 -141.76 -1.47 -16.44 16 22 C 0.44 24.38 2.92 132.91 0.39 24.76 16 23 C -0.19 -9.43 9.49 22.51 0.21 -9.21 16 24 C -0.07 -2.92 10.17 22.45 0.23 -2.69 16 25 C -0.20 -7.57 10.11 22.39 0.23 -7.34 16 26 C 0.10 4.39 11.18 84.66 0.95 5.34 16 27 N -0.52 -28.10 9.69 -192.95 -1.87 -29.97 16 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.10 3.73 7.73 -2.39 -0.02 3.71 16 30 H 0.11 4.02 8.07 -2.39 -0.02 4.00 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 33 H 0.09 1.59 8.00 -2.39 -0.02 1.57 16 34 H 0.11 1.58 7.85 -2.39 -0.02 1.56 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.72 8.01 -2.39 -0.02 1.70 16 37 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.65 8.00 -2.39 -0.02 1.63 16 40 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.10 5.09 8.06 -2.92 -0.02 5.07 16 42 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.16 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.16 5.89 8.06 -2.91 -0.02 5.87 16 Total: -1.00 -76.61 360.54 3.90 -72.71 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.99 Total: 36.02 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.22 Total: 4.91 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -2.93 Total: -103.03 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -1.40 Total: -52.85 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -76.61 3.90 -72.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892474190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.243 kcal (2) G-P(sol) polarization free energy of solvation -76.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds