Wall clock time and date at job start Tue Mar 31 2020 11:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47355 * 273.80631 * 3 2 1 5 5 H 1.48498 * 109.47234 * 33.80912 * 3 2 1 6 6 H 1.48507 * 109.47106 * 153.80928 * 3 2 1 7 7 C 1.38895 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00138 * 341.25072 * 7 2 1 9 9 N 1.37214 * 120.00196 * 161.25473 * 7 2 1 10 10 C 1.34771 * 120.00207 * 126.05821 * 9 7 2 11 11 O 1.21270 * 120.00277 * 184.40258 * 10 9 7 12 12 C 1.50704 * 119.99875 * 4.39530 * 10 9 7 13 13 C 1.53001 * 109.47237 * 174.92989 * 12 10 9 14 14 H 1.09006 * 109.82598 * 305.70512 * 13 12 10 15 15 C 1.54448 * 109.83473 * 184.81454 * 13 12 10 16 16 C 1.55611 * 102.29128 * 219.18592 * 15 13 12 17 17 C 1.54085 * 100.85050 * 33.10522 * 16 15 13 18 18 C 1.52883 * 115.02106 * 94.67819 * 17 16 15 19 19 C 1.53946 * 86.80800 * 91.89126 * 18 17 16 20 20 C 1.52862 * 115.04677 * 194.80370 * 17 16 15 21 21 O 1.42649 * 106.35742 * 324.77551 * 17 16 15 22 22 C 1.39426 * 119.99903 * 306.05859 * 9 7 2 23 23 C 1.39068 * 119.69620 * 4.99895 * 22 9 7 24 24 C 1.38384 * 119.09598 * 180.02562 * 23 22 9 25 25 C 1.38823 * 118.49232 * 0.02562 * 24 23 22 26 26 C 1.38144 * 119.31216 * 359.97438 * 25 24 23 27 27 N 1.31876 * 120.85207 * 0.02562 * 26 25 24 28 28 H 0.97009 * 119.99945 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47688 * 294.93508 * 12 10 9 30 30 H 1.08997 * 109.46837 * 54.93492 * 12 10 9 31 31 H 1.08996 * 110.83002 * 337.35210 * 15 13 12 32 32 H 1.09006 * 110.83074 * 100.91462 * 15 13 12 33 33 H 1.08994 * 111.08583 * 275.21700 * 16 15 13 34 34 H 1.09008 * 111.20828 * 151.04102 * 16 15 13 35 35 H 1.08999 * 113.65512 * 206.36973 * 18 17 16 36 36 H 1.08997 * 113.65890 * 337.41588 * 18 17 16 37 37 H 1.09003 * 113.58644 * 270.17409 * 19 18 17 38 38 H 1.08991 * 113.59221 * 139.34861 * 19 18 17 39 39 H 1.09007 * 113.65492 * 22.61757 * 20 17 16 40 40 H 1.09000 * 113.65992 * 153.65360 * 20 17 16 41 41 H 1.07997 * 120.45323 * 0.02562 * 23 22 9 42 42 H 1.07997 * 120.74950 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.34326 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.57016 * 179.73183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4151 2.0929 -1.3969 5 1 1.4882 2.6281 0.7790 6 1 3.5836 1.4182 0.6180 7 6 2.0085 -1.2029 -0.0005 8 1 1.5115 -2.1135 0.2997 9 7 3.3261 -1.2343 -0.3824 10 6 4.2515 -1.7764 0.4337 11 8 5.4255 -1.7329 0.1327 12 6 3.8274 -2.4366 1.7203 13 6 5.0451 -3.0755 2.3913 14 1 5.5411 -3.7492 1.6925 15 6 4.6014 -3.8571 3.6473 16 6 5.7455 -3.5431 4.6542 17 6 6.1187 -2.1092 4.2312 18 6 5.4303 -1.0003 5.0273 19 6 6.6522 -1.0318 5.9632 20 6 7.4526 -1.5998 4.7772 21 8 5.9594 -2.0539 2.8147 22 6 3.7075 -0.7053 -1.6148 23 6 2.7670 -0.0546 -2.4060 24 6 3.1590 0.4652 -3.6271 25 6 4.4830 0.3153 -4.0164 26 6 5.3636 -0.3428 -3.1798 27 7 4.9613 -0.8280 -2.0214 28 1 -0.4850 0.8401 0.0004 29 1 3.3954 -1.6901 2.3867 30 1 3.0852 -3.2057 1.5066 31 1 3.6463 -3.4851 4.0180 32 1 4.5481 -4.9259 3.4400 33 1 6.5854 -4.2244 4.5184 34 1 5.3841 -3.5684 5.6823 35 1 5.3259 -0.0661 4.4756 36 1 4.5039 -1.3166 5.5067 37 1 6.5478 -1.7303 6.7934 38 1 6.9845 -0.0433 6.2801 39 1 8.1433 -2.3955 5.0566 40 1 7.9160 -0.8339 4.1553 41 1 1.7447 0.0437 -2.0721 42 1 2.4508 0.9760 -4.2628 43 1 4.8214 0.7097 -4.9632 44 1 6.3936 -0.4657 -3.4805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892474191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:35 Heat of formation + Delta-G solvation = 3.487564 kcal Electronic energy + Delta-G solvation = -27353.880177 eV Core-core repulsion = 23658.997257 eV Total energy + Delta-G solvation = -3694.882920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.45006 -39.92319 -38.08592 -36.28781 -35.03353 -32.39159 -32.10730 -31.44041 -30.54782 -29.13363 -25.78552 -25.52026 -25.16260 -23.02778 -22.52293 -22.03361 -20.82942 -19.22168 -18.74384 -18.16387 -16.53983 -16.24001 -15.97167 -15.76947 -15.44079 -15.08970 -14.67925 -14.43741 -14.30765 -13.72299 -13.64002 -13.33233 -13.04409 -12.79170 -12.65723 -12.34457 -12.30270 -12.04037 -11.87870 -11.68045 -11.50348 -11.31984 -11.13553 -10.99135 -10.95761 -10.68627 -10.55153 -10.38253 -10.21503 -10.15923 -9.58364 -9.17973 -9.11177 -9.02101 -8.65973 -8.07589 -7.17471 -6.65065 -4.49314 1.92832 2.11605 3.07882 3.18455 3.31042 3.75639 3.95147 4.03390 4.12333 4.52131 4.60332 4.62745 4.71546 4.82941 4.89791 5.00393 5.12892 5.22908 5.35597 5.46152 5.50295 5.66309 5.68022 5.73578 5.78847 5.82474 5.85188 5.88755 5.90317 5.94761 6.03685 6.05884 6.12585 6.19162 6.28295 6.40084 6.44328 6.58893 6.63105 6.79194 6.97668 7.21907 7.52214 7.57695 7.98778 8.11930 8.64683 8.84128 9.19893 9.61494 10.39712 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.004626 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.913556 B = 6051.000235 C = 6664.483000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.088 3.912 3 Si 0.855 3.145 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.366 4.366 8 H 0.110 0.890 9 N -0.413 5.413 10 C 0.499 3.501 11 O -0.500 6.500 12 C -0.129 4.129 13 C 0.096 3.904 14 H 0.081 0.919 15 C -0.150 4.150 16 C -0.128 4.128 17 C 0.078 3.922 18 C -0.151 4.151 19 C -0.140 4.140 20 C -0.128 4.128 21 O -0.338 6.338 22 C 0.361 3.639 23 C -0.203 4.203 24 C -0.063 4.063 25 C -0.237 4.237 26 C 0.117 3.883 27 N -0.490 5.490 28 H 0.279 0.721 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.152 0.848 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 -3.289 6.562 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.679 3.321 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.128 0.872 9 N -0.127 5.127 10 C 0.288 3.712 11 O -0.373 6.373 12 C -0.169 4.169 13 C 0.038 3.962 14 H 0.099 0.901 15 C -0.188 4.188 16 C -0.166 4.166 17 C 0.038 3.962 18 C -0.189 4.189 19 C -0.177 4.177 20 C -0.166 4.166 21 O -0.256 6.256 22 C 0.131 3.869 23 C -0.227 4.227 24 C -0.089 4.089 25 C -0.259 4.259 26 C -0.042 4.042 27 N -0.206 5.206 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.169 0.831 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.880 -3.524 6.957 11.087 hybrid contribution -0.733 1.353 -0.510 1.622 sum 7.147 -2.170 6.447 9.867 Atomic orbital electron populations 1.69752 1.06153 1.28714 1.43458 1.25442 0.95066 0.98654 0.93119 0.87283 0.81390 0.83390 0.80047 1.17998 1.20683 1.18503 1.18942 0.83657 0.96588 1.50029 0.87244 1.41630 1.08736 1.51742 1.10637 1.20898 0.85386 0.79912 0.85018 1.90692 1.17058 1.56141 1.73414 1.21864 0.97799 1.01573 0.95699 1.22582 0.89702 0.88970 0.94981 0.90089 1.23239 0.99258 1.01140 0.95135 1.22908 0.98720 0.95284 0.99686 1.23085 0.96449 0.94057 0.82641 1.23351 0.97627 1.00252 0.97630 1.22725 0.97232 1.01317 0.96432 1.23030 0.95941 1.00923 0.96682 1.88566 1.63746 1.54213 1.19085 1.19254 0.88722 0.91739 0.87196 1.21958 1.02397 1.02438 0.95874 1.21252 0.95747 0.96647 0.95250 1.21766 0.95017 1.07072 1.02058 1.22469 0.99173 0.93343 0.89238 1.67714 1.15793 1.21306 1.15777 0.91013 0.88433 0.88394 0.90083 0.90063 0.90349 0.90158 0.89310 0.91226 0.90258 0.91125 0.91183 0.89318 0.83063 0.85864 0.86172 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.11 13.96 55.49 0.77 -21.33 16 2 C 0.09 2.24 3.71 -17.49 -0.06 2.17 16 3 Si 0.85 20.74 24.95 -169.99 -4.24 16.50 16 4 H -0.26 -6.03 6.17 56.52 0.35 -5.68 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.37 -9.31 8.19 -14.90 -0.12 -9.44 16 8 H 0.11 2.83 7.68 -52.49 -0.40 2.43 16 9 N -0.41 -10.47 2.10 -60.71 -0.13 -10.60 16 10 C 0.50 12.10 7.50 -10.99 -0.08 12.01 16 11 O -0.50 -13.21 13.73 -9.00 -0.12 -13.34 16 12 C -0.13 -2.50 4.10 -27.88 -0.11 -2.62 16 13 C 0.10 1.63 3.06 -25.97 -0.08 1.55 16 14 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 15 C -0.15 -1.88 6.57 -24.58 -0.16 -2.04 16 16 C -0.13 -1.48 6.21 -24.77 -0.15 -1.63 16 17 C 0.08 1.11 1.44 -90.19 -0.13 0.98 16 18 C -0.15 -2.01 7.58 -26.30 -0.20 -2.21 16 19 C -0.14 -1.50 7.90 -25.75 -0.20 -1.70 16 20 C -0.13 -1.60 7.64 -26.31 -0.20 -1.80 16 21 O -0.34 -6.39 10.06 -49.79 -0.50 -6.89 16 22 C 0.36 9.06 6.08 -154.64 -0.94 8.12 16 23 C -0.20 -4.72 6.14 -39.22 -0.24 -4.96 16 24 C -0.06 -1.23 10.17 -39.31 -0.40 -1.63 16 25 C -0.24 -4.25 10.11 -39.40 -0.40 -4.65 16 26 C 0.12 2.34 11.18 -17.57 -0.20 2.14 16 27 N -0.49 -12.00 7.92 -12.34 -0.10 -12.10 16 28 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 30 H 0.10 1.73 7.75 -51.93 -0.40 1.32 16 31 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.77 8.04 -51.92 -0.42 0.35 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 0.85 8.11 -51.93 -0.42 0.42 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.76 8.11 -51.92 -0.42 0.33 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.15 3.69 4.81 -52.49 -0.25 3.44 16 42 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.14 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -31.47 350.50 -9.28 -40.75 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.56 Total: 7.41 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -3.69 Total: -5.68 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.55 Total: -44.04 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.62 Total: -20.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.24 Total: 16.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.47 -9.28 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892474191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.237 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds