Wall clock time and date at job start Tue Mar 31 2020 11:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47355 * 273.80631 * 3 2 1 5 5 H 1.48498 * 109.47234 * 33.80912 * 3 2 1 6 6 H 1.48507 * 109.47106 * 153.80928 * 3 2 1 7 7 C 1.38895 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00138 * 341.25072 * 7 2 1 9 9 N 1.37214 * 120.00196 * 161.25473 * 7 2 1 10 10 C 1.34771 * 120.00207 * 126.05821 * 9 7 2 11 11 O 1.21270 * 120.00277 * 184.40258 * 10 9 7 12 12 C 1.50704 * 119.99875 * 4.39530 * 10 9 7 13 13 C 1.53001 * 109.47237 * 174.92989 * 12 10 9 14 14 H 1.09006 * 109.82598 * 305.70512 * 13 12 10 15 15 C 1.54448 * 109.83473 * 184.81454 * 13 12 10 16 16 C 1.55611 * 102.29128 * 219.18592 * 15 13 12 17 17 C 1.54085 * 100.85050 * 33.10522 * 16 15 13 18 18 C 1.52883 * 115.02106 * 94.67819 * 17 16 15 19 19 C 1.53946 * 86.80800 * 91.89126 * 18 17 16 20 20 C 1.52862 * 115.04677 * 194.80370 * 17 16 15 21 21 O 1.42649 * 106.35742 * 324.77551 * 17 16 15 22 22 C 1.39426 * 119.99903 * 306.05859 * 9 7 2 23 23 C 1.39068 * 119.69620 * 4.99895 * 22 9 7 24 24 C 1.38384 * 119.09598 * 180.02562 * 23 22 9 25 25 C 1.38823 * 118.49232 * 0.02562 * 24 23 22 26 26 C 1.38144 * 119.31216 * 359.97438 * 25 24 23 27 27 N 1.31876 * 120.85207 * 0.02562 * 26 25 24 28 28 H 0.97009 * 119.99945 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47688 * 294.93508 * 12 10 9 30 30 H 1.08997 * 109.46837 * 54.93492 * 12 10 9 31 31 H 1.08996 * 110.83002 * 337.35210 * 15 13 12 32 32 H 1.09006 * 110.83074 * 100.91462 * 15 13 12 33 33 H 1.08994 * 111.08583 * 275.21700 * 16 15 13 34 34 H 1.09008 * 111.20828 * 151.04102 * 16 15 13 35 35 H 1.08999 * 113.65512 * 206.36973 * 18 17 16 36 36 H 1.08997 * 113.65890 * 337.41588 * 18 17 16 37 37 H 1.09003 * 113.58644 * 270.17409 * 19 18 17 38 38 H 1.08991 * 113.59221 * 139.34861 * 19 18 17 39 39 H 1.09007 * 113.65492 * 22.61757 * 20 17 16 40 40 H 1.09000 * 113.65992 * 153.65360 * 20 17 16 41 41 H 1.07997 * 120.45323 * 0.02562 * 23 22 9 42 42 H 1.07997 * 120.74950 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.34326 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.57016 * 179.73183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4151 2.0929 -1.3969 5 1 1.4882 2.6281 0.7790 6 1 3.5836 1.4182 0.6180 7 6 2.0085 -1.2029 -0.0005 8 1 1.5115 -2.1135 0.2997 9 7 3.3261 -1.2343 -0.3824 10 6 4.2515 -1.7764 0.4337 11 8 5.4255 -1.7329 0.1327 12 6 3.8274 -2.4366 1.7203 13 6 5.0451 -3.0755 2.3913 14 1 5.5411 -3.7492 1.6925 15 6 4.6014 -3.8571 3.6473 16 6 5.7455 -3.5431 4.6542 17 6 6.1187 -2.1092 4.2312 18 6 5.4303 -1.0003 5.0273 19 6 6.6522 -1.0318 5.9632 20 6 7.4526 -1.5998 4.7772 21 8 5.9594 -2.0539 2.8147 22 6 3.7075 -0.7053 -1.6148 23 6 2.7670 -0.0546 -2.4060 24 6 3.1590 0.4652 -3.6271 25 6 4.4830 0.3153 -4.0164 26 6 5.3636 -0.3428 -3.1798 27 7 4.9613 -0.8280 -2.0214 28 1 -0.4850 0.8401 0.0004 29 1 3.3954 -1.6901 2.3867 30 1 3.0852 -3.2057 1.5066 31 1 3.6463 -3.4851 4.0180 32 1 4.5481 -4.9259 3.4400 33 1 6.5854 -4.2244 4.5184 34 1 5.3841 -3.5684 5.6823 35 1 5.3259 -0.0661 4.4756 36 1 4.5039 -1.3166 5.5067 37 1 6.5478 -1.7303 6.7934 38 1 6.9845 -0.0433 6.2801 39 1 8.1433 -2.3955 5.0566 40 1 7.9160 -0.8339 4.1553 41 1 1.7447 0.0437 -2.0721 42 1 2.4508 0.9760 -4.2628 43 1 4.8214 0.7097 -4.9632 44 1 6.3936 -0.4657 -3.4805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892474191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:33 Heat of formation + Delta-G solvation = -14.258113 kcal Electronic energy + Delta-G solvation = -27354.649687 eV Core-core repulsion = 23658.997257 eV Total energy + Delta-G solvation = -3695.652431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.89700 -41.35946 -39.77503 -37.52250 -36.87578 -34.30569 -33.38740 -33.13085 -31.96306 -30.66477 -27.31042 -26.81609 -26.54308 -24.48993 -23.88868 -23.41532 -22.14603 -21.04847 -20.01817 -19.73434 -18.04837 -17.86378 -17.56253 -17.08523 -17.02029 -16.45663 -16.14138 -16.01411 -15.87362 -15.50780 -15.07868 -14.85888 -14.67971 -14.23424 -14.14116 -13.88089 -13.68043 -13.33061 -13.25892 -13.08519 -12.94193 -12.81272 -12.51050 -12.39224 -12.24356 -12.18863 -11.88372 -11.84243 -11.48572 -11.39249 -11.15682 -10.94378 -10.90963 -10.48109 -10.27005 -9.83293 -8.98639 -8.63678 -6.49259 0.26011 0.48278 1.12087 1.19530 1.31031 1.93438 2.05707 2.31169 2.68829 2.92025 3.15486 3.49156 3.64621 3.66187 3.71497 3.88263 3.90807 4.05405 4.06364 4.10704 4.19239 4.30459 4.39673 4.44623 4.52821 4.59369 4.65037 4.77554 4.79735 4.81107 4.89296 4.95221 4.96276 4.98159 5.03709 5.10806 5.18459 5.24409 5.34430 5.36443 5.45911 5.48578 5.82822 5.98621 6.25051 6.38963 6.76880 6.98768 7.35210 7.77166 8.43597 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.004626 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.913556 B = 6051.000235 C = 6664.483000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.243 1.243 5 H -0.268 1.268 6 H -0.301 1.301 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.428 5.428 10 C 0.484 3.516 11 O -0.532 6.532 12 C -0.121 4.121 13 C 0.095 3.905 14 H 0.066 0.934 15 C -0.141 4.141 16 C -0.116 4.116 17 C 0.056 3.944 18 C -0.160 4.160 19 C -0.119 4.119 20 C -0.132 4.132 21 O -0.380 6.380 22 C 0.326 3.674 23 C -0.226 4.226 24 C -0.061 4.061 25 C -0.210 4.210 26 C 0.103 3.897 27 N -0.528 5.528 28 H 0.287 0.713 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.135 0.865 42 H 0.162 0.838 43 H 0.173 0.827 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -3.329 6.548 10.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.228 1.228 7 C -0.490 4.490 8 H 0.115 0.885 9 N -0.143 5.143 10 C 0.275 3.725 11 O -0.408 6.408 12 C -0.160 4.160 13 C 0.037 3.963 14 H 0.084 0.916 15 C -0.178 4.178 16 C -0.153 4.153 17 C 0.017 3.983 18 C -0.198 4.198 19 C -0.156 4.156 20 C -0.169 4.169 21 O -0.300 6.300 22 C 0.098 3.902 23 C -0.249 4.249 24 C -0.086 4.086 25 C -0.231 4.231 26 C -0.055 4.055 27 N -0.244 5.244 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.153 0.847 42 H 0.180 0.820 43 H 0.191 0.809 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.324 -3.547 6.924 11.393 hybrid contribution -0.776 1.405 -0.697 1.750 sum 7.547 -2.142 6.227 10.016 Atomic orbital electron populations 1.69757 1.06541 1.29535 1.44587 1.25629 0.95256 0.99649 0.92979 0.86738 0.78636 0.82392 0.80327 1.16671 1.19355 1.22774 1.18831 0.83942 0.96268 1.49921 0.88452 1.41794 1.08611 1.52448 1.11473 1.21734 0.85065 0.79619 0.86097 1.90639 1.18122 1.57574 1.74433 1.21895 0.99411 1.01359 0.93369 1.22579 0.88366 0.88664 0.96688 0.91648 1.23227 0.99872 1.01758 0.92990 1.22923 0.98560 0.93127 1.00721 1.23593 0.97772 0.96193 0.80735 1.23353 0.99486 0.98647 0.98284 1.22708 0.94488 1.02365 0.96054 1.23047 0.95766 1.01006 0.97093 1.88529 1.64191 1.55097 1.22165 1.19491 0.89652 0.93280 0.87790 1.21974 1.01357 1.03964 0.97648 1.21777 0.97373 0.95455 0.94029 1.22284 0.93662 1.04137 1.03030 1.23186 1.01229 0.92847 0.88248 1.67661 1.15918 1.22793 1.18074 0.90285 0.89260 0.87078 0.89506 0.87648 0.89203 0.87208 0.92562 0.89994 0.87251 0.90477 0.89125 0.91693 0.84738 0.82040 0.80920 0.80580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.85 13.96 21.65 0.30 -45.55 16 2 C 0.07 3.85 3.71 84.91 0.31 4.16 16 3 Si 0.89 43.79 24.95 68.60 1.71 45.50 16 4 H -0.24 -11.23 6.17 99.48 0.61 -10.62 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.30 -16.71 7.11 99.48 0.71 -16.01 16 7 C -0.36 -19.24 8.19 84.01 0.69 -18.55 16 8 H 0.10 5.27 7.68 -2.91 -0.02 5.25 16 9 N -0.43 -22.69 2.10 -464.38 -0.98 -23.67 16 10 C 0.48 24.85 7.50 87.66 0.66 25.51 16 11 O -0.53 -29.78 13.73 10.92 0.15 -29.63 16 12 C -0.12 -4.91 4.10 29.85 0.12 -4.79 16 13 C 0.10 3.34 3.06 31.09 0.09 3.44 16 14 H 0.07 2.44 8.02 -2.38 -0.02 2.42 16 15 C -0.14 -3.34 6.57 31.99 0.21 -3.13 16 16 C -0.12 -2.39 6.21 31.86 0.20 -2.19 16 17 C 0.06 1.60 1.44 -10.52 -0.02 1.58 16 18 C -0.16 -4.25 7.58 30.87 0.23 -4.01 16 19 C -0.12 -2.33 7.90 31.23 0.25 -2.08 16 20 C -0.13 -3.20 7.64 30.87 0.24 -2.96 16 21 O -0.38 -15.08 10.06 -135.06 -1.36 -16.44 16 22 C 0.33 16.80 6.08 132.91 0.81 17.61 16 23 C -0.23 -10.46 6.14 22.50 0.14 -10.32 16 24 C -0.06 -2.19 10.17 22.44 0.23 -1.97 16 25 C -0.21 -6.73 10.11 22.39 0.23 -6.51 16 26 C 0.10 3.95 11.18 84.66 0.95 4.90 16 27 N -0.53 -26.26 7.92 -192.96 -1.53 -27.78 16 28 H 0.29 13.99 8.31 -92.70 -0.77 13.22 16 29 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.11 4.10 7.75 -2.39 -0.02 4.08 16 31 H 0.09 1.96 7.85 -2.39 -0.02 1.94 16 32 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.64 8.04 -2.38 -0.02 1.62 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.91 8.11 -2.39 -0.02 1.89 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.79 8.11 -2.38 -0.02 1.77 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.13 6.63 4.81 -2.91 -0.01 6.62 16 42 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.18 5.37 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -73.45 350.50 4.54 -68.91 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.90 Total: 28.00 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.33 Total: 0.67 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -2.20 Total: -97.01 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -1.21 Total: -46.08 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.71 Total: 45.50 kcal Total: -73.45 4.54 -68.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892474191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.651 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds