Wall clock time and date at job start Tue Mar 31 2020 12:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38377 * 119.92389 * 2 1 4 4 C 1.38334 * 120.30017 * 179.97438 * 3 2 1 5 5 C 1.37971 * 120.15074 * 359.78067 * 4 3 2 6 6 C 1.50703 * 120.07914 * 180.23304 * 5 4 3 7 7 C 1.39592 * 119.84737 * 0.47708 * 5 4 3 8 8 C 1.47641 * 120.14829 * 179.79094 * 7 5 4 9 9 N 1.29081 * 125.86784 * 359.68639 * 8 7 5 10 10 O 1.41394 * 112.87251 * 180.30379 * 9 8 7 11 11 C 1.44207 * 107.59414 * 342.50632 * 10 9 8 12 12 H 1.09000 * 110.97098 * 143.55961 * 11 10 9 13 13 C 1.50699 * 110.97180 * 267.28788 * 11 10 9 14 14 O 1.21282 * 120.00436 * 3.54829 * 13 11 10 15 15 N 1.34775 * 119.99942 * 183.54989 * 13 11 10 16 16 C 1.46502 * 120.00177 * 180.02562 * 15 13 11 17 17 H 1.09007 * 109.46841 * 35.00032 * 16 15 13 18 18 C 1.52997 * 109.47000 * 275.00249 * 16 15 13 19 19 C 1.50701 * 109.47209 * 154.99479 * 16 15 13 20 20 H 1.08000 * 119.99705 * 95.25691 * 19 16 15 21 21 C 1.37878 * 120.00319 * 275.25883 * 19 16 15 22 22 N 1.31510 * 119.99568 * 355.14973 * 21 19 16 23 23 Si 1.86797 * 119.99899 * 175.15335 * 21 19 16 24 24 H 1.48501 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47023 * 119.99727 * 23 21 19 26 26 H 1.48499 * 109.47168 * 239.99787 * 23 21 19 27 27 C 1.51696 * 125.86418 * 179.67341 * 8 7 5 28 28 C 1.37929 * 119.92710 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47126 * 270.02071 * 1 2 3 30 30 H 1.09004 * 109.47230 * 30.02478 * 1 2 3 31 31 H 1.08996 * 109.46892 * 150.02027 * 1 2 3 32 32 H 1.08006 * 119.84937 * 359.97330 * 3 2 1 33 33 H 1.08006 * 119.92211 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47218 * 270.24065 * 6 5 4 35 35 H 1.08998 * 109.46729 * 30.23729 * 6 5 4 36 36 H 1.08999 * 109.47123 * 150.23757 * 6 5 4 37 37 H 0.96996 * 120.00061 * 0.02562 * 15 13 11 38 38 H 1.09002 * 109.47007 * 295.02760 * 18 16 15 39 39 H 1.08997 * 109.47323 * 55.03017 * 18 16 15 40 40 H 1.09006 * 109.46933 * 175.02900 * 18 16 15 41 41 H 0.97001 * 120.00702 * 5.13434 * 22 21 19 42 42 H 1.08997 * 110.79293 * 77.13948 * 27 8 7 43 43 H 1.09001 * 110.78751 * 313.66672 * 27 8 7 44 44 H 1.08006 * 120.07293 * 0.04474 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2084 0.0005 5 6 4.2814 0.0199 0.0056 6 6 5.7884 0.0317 0.0115 7 6 3.5914 -1.1935 0.0002 8 6 4.3347 -2.4692 0.0009 9 7 5.6193 -2.5961 0.0006 10 8 6.0381 -3.9465 -0.0054 11 6 4.9150 -4.7531 0.4040 12 1 4.8944 -5.6977 -0.1395 13 6 4.9353 -4.9905 1.8920 14 8 5.7880 -4.4677 2.5780 15 7 4.0060 -5.7840 2.4606 16 6 4.0254 -6.0144 3.9072 17 1 4.3564 -5.1084 4.4150 18 6 4.9878 -7.1596 4.2283 19 6 2.6398 -6.3757 4.3770 20 1 2.3579 -7.4132 4.4796 21 6 1.7320 -5.3819 4.6757 22 7 2.1034 -4.1207 4.6429 23 14 -0.0251 -5.8268 5.1271 24 1 -0.1869 -7.3026 5.0912 25 1 -0.3266 -5.3285 6.4930 26 1 -0.9589 -5.2032 4.1553 27 6 3.7199 -3.8560 0.0025 28 6 2.1952 -1.1954 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6536 2.1325 -0.0004 33 1 4.1132 2.1480 0.0009 34 1 6.1557 0.0368 -1.0147 35 1 6.1427 0.9234 0.5287 36 1 6.1567 -0.8565 0.5249 37 1 3.3243 -6.2025 1.9119 38 1 4.6095 -8.0848 3.7936 39 1 5.9697 -6.9369 3.8110 40 1 5.0697 -7.2730 5.3094 41 1 2.9931 -3.8848 4.3369 42 1 3.3553 -4.1187 -0.9905 43 1 2.9203 -3.9238 0.7401 44 1 1.6551 -2.1307 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900433411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:55 Heat of formation + Delta-G solvation = -6.122729 kcal Electronic energy + Delta-G solvation = -26704.824016 eV Core-core repulsion = 23009.524362 eV Total energy + Delta-G solvation = -3695.299654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.58144 -39.37391 -38.01985 -34.97803 -34.38123 -33.01827 -32.33600 -30.99533 -30.29678 -29.39722 -28.86454 -25.03820 -24.85021 -24.31347 -23.48827 -21.44733 -21.15304 -19.78129 -19.19916 -17.74389 -16.87911 -16.39300 -15.87376 -15.65164 -15.24862 -14.88770 -14.60426 -14.19121 -13.92255 -13.83307 -13.71326 -13.45978 -13.23207 -13.18734 -12.81096 -12.69679 -12.50489 -12.27791 -12.03901 -11.91800 -11.65943 -11.60732 -11.32435 -11.23474 -11.10910 -11.03647 -10.93062 -10.39346 -10.28757 -10.15328 -9.99993 -9.19810 -8.85097 -8.61619 -8.53576 -8.31747 -7.93172 -6.60512 -4.41855 0.73882 1.31763 2.29337 3.02147 3.29227 3.30913 3.42386 3.46631 3.73108 3.92900 4.06448 4.32679 4.48509 4.62170 4.74809 4.83348 4.94847 5.04410 5.13675 5.22123 5.25983 5.38185 5.46378 5.56768 5.60116 5.63216 5.65718 5.72477 5.77827 5.88664 5.94623 6.01348 6.30431 6.32466 6.39934 6.48576 6.50385 6.56395 6.62022 6.90804 6.99817 7.18955 7.44347 7.59894 7.81939 8.20244 8.52283 8.68631 9.08401 9.38595 10.75541 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.004947 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.427402 B = 5658.194626 C = 7542.335293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.099 4.099 4 C -0.124 4.124 5 C -0.048 4.048 6 C -0.132 4.132 7 C -0.038 4.038 8 C 0.127 3.873 9 N -0.270 5.270 10 O -0.176 6.176 11 C 0.022 3.978 12 H 0.131 0.869 13 C 0.481 3.519 14 O -0.540 6.540 15 N -0.699 5.699 16 C 0.235 3.765 17 H 0.053 0.947 18 C -0.140 4.140 19 C -0.607 4.607 20 H 0.058 0.942 21 C 0.031 3.969 22 N -0.887 5.887 23 Si 1.074 2.926 24 H -0.287 1.287 25 H -0.284 1.284 26 H -0.286 1.286 27 C -0.138 4.138 28 C -0.078 4.078 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.385 0.615 38 H 0.040 0.960 39 H 0.031 0.969 40 H 0.051 0.949 41 H 0.277 0.723 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 6.956 -13.250 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.142 4.142 5 C -0.050 4.050 6 C -0.188 4.188 7 C -0.039 4.039 8 C -0.062 4.062 9 N -0.012 5.012 10 O -0.193 6.193 11 C -0.041 4.041 12 H 0.149 0.851 13 C 0.264 3.736 14 O -0.418 6.418 15 N -0.350 5.350 16 C 0.136 3.864 17 H 0.071 0.929 18 C -0.199 4.199 19 C -0.646 4.646 20 H 0.076 0.924 21 C -0.179 4.179 22 N -0.521 5.521 23 Si 0.901 3.099 24 H -0.212 1.212 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.178 4.178 28 C -0.098 4.098 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.219 0.781 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.911 8.312 -12.278 15.110 hybrid contribution 0.330 -1.467 -0.671 1.647 sum -2.580 6.845 -12.949 14.872 Atomic orbital electron populations 1.20788 0.90703 1.02671 1.02834 1.19778 0.96361 0.92655 1.00743 1.21163 0.94113 0.97592 0.98903 1.20949 0.94045 0.97365 1.01840 1.20106 0.96745 0.91790 0.96388 1.21225 0.90285 1.04448 1.02883 1.17688 0.92335 0.88582 1.05328 1.24189 0.92136 0.94612 0.95271 1.78399 1.12889 0.97298 1.12626 1.91268 1.31767 1.10664 1.85588 1.23774 0.86771 0.97520 0.95997 0.85122 1.20771 0.83225 0.80802 0.88821 1.90672 1.37408 1.50129 1.63544 1.47705 1.28811 1.46935 1.11552 1.18899 0.95539 0.95058 0.76929 0.92914 1.21989 0.98185 0.99245 1.00432 1.22165 0.97498 0.95381 1.49553 0.92393 1.26031 1.04992 0.93338 0.93491 1.70693 1.22981 1.18008 1.40375 0.83482 0.74202 0.75064 0.77123 1.21250 1.21054 1.21185 1.22957 1.00276 0.89473 1.05070 1.21107 0.92186 0.98485 0.98000 0.90739 0.91589 0.91395 0.85761 0.85544 0.90893 0.91764 0.88125 0.78123 0.94065 0.94951 0.92989 0.91064 0.87231 0.86969 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.10 -1.13 5.87 -104.68 -0.61 -1.75 16 3 C -0.10 -1.10 9.69 -39.49 -0.38 -1.48 16 4 C -0.12 -1.47 9.69 -39.64 -0.38 -1.85 16 5 C -0.05 -0.68 5.91 -104.21 -0.62 -1.30 16 6 C -0.13 -1.81 9.18 36.01 0.33 -1.48 16 7 C -0.04 -0.58 5.87 -105.03 -0.62 -1.20 16 8 C 0.13 2.10 7.05 -79.42 -0.56 1.54 16 9 N -0.27 -5.02 8.97 35.30 0.32 -4.70 16 10 O -0.18 -3.43 11.83 -30.21 -0.36 -3.78 16 11 C 0.02 0.38 4.23 -26.97 -0.11 0.26 16 12 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 13 C 0.48 10.41 7.10 -10.99 -0.08 10.34 16 14 O -0.54 -14.21 16.25 -13.28 -0.22 -14.42 16 15 N -0.70 -14.93 5.07 -54.93 -0.28 -15.20 16 16 C 0.24 5.81 2.28 -69.08 -0.16 5.65 16 17 H 0.05 1.52 6.11 -51.92 -0.32 1.20 16 18 C -0.14 -3.10 9.46 37.16 0.35 -2.74 16 19 C -0.61 -15.65 8.50 -34.44 -0.29 -15.95 16 20 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 21 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 22 N -0.89 -25.33 13.63 55.43 0.76 -24.57 16 23 Si 1.07 23.12 29.91 -169.99 -5.08 18.03 16 24 H -0.29 -5.86 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 27 C -0.14 -2.02 5.81 -26.48 -0.15 -2.18 16 28 C -0.08 -1.05 9.26 -39.18 -0.36 -1.41 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.10 1.69 5.19 -51.93 -0.27 1.42 16 37 H 0.39 7.22 8.59 -40.82 -0.35 6.87 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.28 8.28 6.66 -40.82 -0.27 8.01 16 42 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.11 1.73 7.72 -51.93 -0.40 1.33 16 44 H 0.13 1.58 7.37 -52.48 -0.39 1.20 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -33.13 369.17 -8.96 -42.09 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.27 Total: 10.54 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.39 Total: -13.54 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.79 Total: -44.47 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.57 Total: -18.20 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.08 Total: 18.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.13 -8.96 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.963 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds