Wall clock time and date at job start Tue Mar 31 2020 12:04:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38377 * 119.92389 * 2 1
4 4 C 1.38334 * 120.30017 * 179.97438 * 3 2 1
5 5 C 1.37971 * 120.15074 * 359.78067 * 4 3 2
6 6 C 1.50703 * 120.07914 * 180.23304 * 5 4 3
7 7 C 1.39592 * 119.84737 * 0.47708 * 5 4 3
8 8 C 1.47641 * 120.14829 * 179.79094 * 7 5 4
9 9 N 1.29081 * 125.86784 * 359.68639 * 8 7 5
10 10 O 1.41394 * 112.87251 * 180.30379 * 9 8 7
11 11 C 1.44207 * 107.59414 * 342.50632 * 10 9 8
12 12 H 1.09000 * 110.97098 * 143.55961 * 11 10 9
13 13 C 1.50699 * 110.97180 * 267.28788 * 11 10 9
14 14 O 1.21282 * 120.00436 * 3.54829 * 13 11 10
15 15 N 1.34775 * 119.99942 * 183.54989 * 13 11 10
16 16 C 1.46502 * 120.00177 * 180.02562 * 15 13 11
17 17 H 1.09007 * 109.46841 * 35.00032 * 16 15 13
18 18 C 1.52997 * 109.47000 * 275.00249 * 16 15 13
19 19 C 1.50701 * 109.47209 * 154.99479 * 16 15 13
20 20 H 1.08000 * 119.99705 * 95.25691 * 19 16 15
21 21 C 1.37878 * 120.00319 * 275.25883 * 19 16 15
22 22 N 1.31510 * 119.99568 * 355.14973 * 21 19 16
23 23 Si 1.86797 * 119.99899 * 175.15335 * 21 19 16
24 24 H 1.48501 * 109.47350 * 359.97438 * 23 21 19
25 25 H 1.48495 * 109.47023 * 119.99727 * 23 21 19
26 26 H 1.48499 * 109.47168 * 239.99787 * 23 21 19
27 27 C 1.51696 * 125.86418 * 179.67341 * 8 7 5
28 28 C 1.37929 * 119.92710 * 179.97438 * 2 1 3
29 29 H 1.08998 * 109.47126 * 270.02071 * 1 2 3
30 30 H 1.09004 * 109.47230 * 30.02478 * 1 2 3
31 31 H 1.08996 * 109.46892 * 150.02027 * 1 2 3
32 32 H 1.08006 * 119.84937 * 359.97330 * 3 2 1
33 33 H 1.08006 * 119.92211 * 180.02562 * 4 3 2
34 34 H 1.08998 * 109.47218 * 270.24065 * 6 5 4
35 35 H 1.08998 * 109.46729 * 30.23729 * 6 5 4
36 36 H 1.08999 * 109.47123 * 150.23757 * 6 5 4
37 37 H 0.96996 * 120.00061 * 0.02562 * 15 13 11
38 38 H 1.09002 * 109.47007 * 295.02760 * 18 16 15
39 39 H 1.08997 * 109.47323 * 55.03017 * 18 16 15
40 40 H 1.09006 * 109.46933 * 175.02900 * 18 16 15
41 41 H 0.97001 * 120.00702 * 5.13434 * 22 21 19
42 42 H 1.08997 * 110.79293 * 77.13948 * 27 8 7
43 43 H 1.09001 * 110.78751 * 313.66672 * 27 8 7
44 44 H 1.08006 * 120.07293 * 0.04474 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1973 1.1993 0.0000
4 6 3.5806 1.2084 0.0005
5 6 4.2814 0.0199 0.0056
6 6 5.7884 0.0317 0.0115
7 6 3.5914 -1.1935 0.0002
8 6 4.3347 -2.4692 0.0009
9 7 5.6193 -2.5961 0.0006
10 8 6.0381 -3.9465 -0.0054
11 6 4.9150 -4.7531 0.4040
12 1 4.8944 -5.6977 -0.1395
13 6 4.9353 -4.9905 1.8920
14 8 5.7880 -4.4677 2.5780
15 7 4.0060 -5.7840 2.4606
16 6 4.0254 -6.0144 3.9072
17 1 4.3564 -5.1084 4.4150
18 6 4.9878 -7.1596 4.2283
19 6 2.6398 -6.3757 4.3770
20 1 2.3579 -7.4132 4.4796
21 6 1.7320 -5.3819 4.6757
22 7 2.1034 -4.1207 4.6429
23 14 -0.0251 -5.8268 5.1271
24 1 -0.1869 -7.3026 5.0912
25 1 -0.3266 -5.3285 6.4930
26 1 -0.9589 -5.2032 4.1553
27 6 3.7199 -3.8560 0.0025
28 6 2.1952 -1.1954 0.0005
29 1 -0.3633 0.0004 1.0276
30 1 -0.3634 0.8898 -0.5142
31 1 -0.3633 -0.8901 -0.5135
32 1 1.6536 2.1325 -0.0004
33 1 4.1132 2.1480 0.0009
34 1 6.1557 0.0368 -1.0147
35 1 6.1427 0.9234 0.5287
36 1 6.1567 -0.8565 0.5249
37 1 3.3243 -6.2025 1.9119
38 1 4.6095 -8.0848 3.7936
39 1 5.9697 -6.9369 3.8110
40 1 5.0697 -7.2730 5.3094
41 1 2.9931 -3.8848 4.3369
42 1 3.3553 -4.1187 -0.9905
43 1 2.9203 -3.9238 0.7401
44 1 1.6551 -2.1307 0.0002
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000900433411.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:55
Heat of formation + Delta-G solvation = -6.122729 kcal
Electronic energy + Delta-G solvation = -26704.824016 eV
Core-core repulsion = 23009.524362 eV
Total energy + Delta-G solvation = -3695.299654 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 1.96 seconds
Orbital eigenvalues (eV)
-40.58144 -39.37391 -38.01985 -34.97803 -34.38123 -33.01827 -32.33600 -30.99533
-30.29678 -29.39722 -28.86454 -25.03820 -24.85021 -24.31347 -23.48827 -21.44733
-21.15304 -19.78129 -19.19916 -17.74389 -16.87911 -16.39300 -15.87376 -15.65164
-15.24862 -14.88770 -14.60426 -14.19121 -13.92255 -13.83307 -13.71326 -13.45978
-13.23207 -13.18734 -12.81096 -12.69679 -12.50489 -12.27791 -12.03901 -11.91800
-11.65943 -11.60732 -11.32435 -11.23474 -11.10910 -11.03647 -10.93062 -10.39346
-10.28757 -10.15328 -9.99993 -9.19810 -8.85097 -8.61619 -8.53576 -8.31747
-7.93172 -6.60512 -4.41855 0.73882 1.31763 2.29337 3.02147 3.29227
3.30913 3.42386 3.46631 3.73108 3.92900 4.06448 4.32679 4.48509
4.62170 4.74809 4.83348 4.94847 5.04410 5.13675 5.22123 5.25983
5.38185 5.46378 5.56768 5.60116 5.63216 5.65718 5.72477 5.77827
5.88664 5.94623 6.01348 6.30431 6.32466 6.39934 6.48576 6.50385
6.56395 6.62022 6.90804 6.99817 7.18955 7.44347 7.59894 7.81939
8.20244 8.52283 8.68631 9.08401 9.38595 10.75541
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.010832 B = 0.004947 C = 0.003711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2584.427402 B = 5658.194626 C = 7542.335293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.095 4.095
3 C -0.099 4.099
4 C -0.124 4.124
5 C -0.048 4.048
6 C -0.132 4.132
7 C -0.038 4.038
8 C 0.127 3.873
9 N -0.270 5.270
10 O -0.176 6.176
11 C 0.022 3.978
12 H 0.131 0.869
13 C 0.481 3.519
14 O -0.540 6.540
15 N -0.699 5.699
16 C 0.235 3.765
17 H 0.053 0.947
18 C -0.140 4.140
19 C -0.607 4.607
20 H 0.058 0.942
21 C 0.031 3.969
22 N -0.887 5.887
23 Si 1.074 2.926
24 H -0.287 1.287
25 H -0.284 1.284
26 H -0.286 1.286
27 C -0.138 4.138
28 C -0.078 4.078
29 H 0.074 0.926
30 H 0.065 0.935
31 H 0.067 0.933
32 H 0.124 0.876
33 H 0.127 0.873
34 H 0.073 0.927
35 H 0.063 0.937
36 H 0.101 0.899
37 H 0.385 0.615
38 H 0.040 0.960
39 H 0.031 0.969
40 H 0.051 0.949
41 H 0.277 0.723
42 H 0.110 0.890
43 H 0.112 0.888
44 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.329 6.956 -13.250 15.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.095 4.095
3 C -0.118 4.118
4 C -0.142 4.142
5 C -0.050 4.050
6 C -0.188 4.188
7 C -0.039 4.039
8 C -0.062 4.062
9 N -0.012 5.012
10 O -0.193 6.193
11 C -0.041 4.041
12 H 0.149 0.851
13 C 0.264 3.736
14 O -0.418 6.418
15 N -0.350 5.350
16 C 0.136 3.864
17 H 0.071 0.929
18 C -0.199 4.199
19 C -0.646 4.646
20 H 0.076 0.924
21 C -0.179 4.179
22 N -0.521 5.521
23 Si 0.901 3.099
24 H -0.212 1.212
25 H -0.211 1.211
26 H -0.212 1.212
27 C -0.178 4.178
28 C -0.098 4.098
29 H 0.093 0.907
30 H 0.084 0.916
31 H 0.086 0.914
32 H 0.142 0.858
33 H 0.145 0.855
34 H 0.091 0.909
35 H 0.082 0.918
36 H 0.119 0.881
37 H 0.219 0.781
38 H 0.059 0.941
39 H 0.050 0.950
40 H 0.070 0.930
41 H 0.089 0.911
42 H 0.128 0.872
43 H 0.130 0.870
44 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -2.911 8.312 -12.278 15.110
hybrid contribution 0.330 -1.467 -0.671 1.647
sum -2.580 6.845 -12.949 14.872
Atomic orbital electron populations
1.20788 0.90703 1.02671 1.02834 1.19778 0.96361 0.92655 1.00743
1.21163 0.94113 0.97592 0.98903 1.20949 0.94045 0.97365 1.01840
1.20106 0.96745 0.91790 0.96388 1.21225 0.90285 1.04448 1.02883
1.17688 0.92335 0.88582 1.05328 1.24189 0.92136 0.94612 0.95271
1.78399 1.12889 0.97298 1.12626 1.91268 1.31767 1.10664 1.85588
1.23774 0.86771 0.97520 0.95997 0.85122 1.20771 0.83225 0.80802
0.88821 1.90672 1.37408 1.50129 1.63544 1.47705 1.28811 1.46935
1.11552 1.18899 0.95539 0.95058 0.76929 0.92914 1.21989 0.98185
0.99245 1.00432 1.22165 0.97498 0.95381 1.49553 0.92393 1.26031
1.04992 0.93338 0.93491 1.70693 1.22981 1.18008 1.40375 0.83482
0.74202 0.75064 0.77123 1.21250 1.21054 1.21185 1.22957 1.00276
0.89473 1.05070 1.21107 0.92186 0.98485 0.98000 0.90739 0.91589
0.91395 0.85761 0.85544 0.90893 0.91764 0.88125 0.78123 0.94065
0.94951 0.92989 0.91064 0.87231 0.86969 0.85218
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16
2 C -0.10 -1.13 5.87 -104.68 -0.61 -1.75 16
3 C -0.10 -1.10 9.69 -39.49 -0.38 -1.48 16
4 C -0.12 -1.47 9.69 -39.64 -0.38 -1.85 16
5 C -0.05 -0.68 5.91 -104.21 -0.62 -1.30 16
6 C -0.13 -1.81 9.18 36.01 0.33 -1.48 16
7 C -0.04 -0.58 5.87 -105.03 -0.62 -1.20 16
8 C 0.13 2.10 7.05 -79.42 -0.56 1.54 16
9 N -0.27 -5.02 8.97 35.30 0.32 -4.70 16
10 O -0.18 -3.43 11.83 -30.21 -0.36 -3.78 16
11 C 0.02 0.38 4.23 -26.97 -0.11 0.26 16
12 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16
13 C 0.48 10.41 7.10 -10.99 -0.08 10.34 16
14 O -0.54 -14.21 16.25 -13.28 -0.22 -14.42 16
15 N -0.70 -14.93 5.07 -54.93 -0.28 -15.20 16
16 C 0.24 5.81 2.28 -69.08 -0.16 5.65 16
17 H 0.05 1.52 6.11 -51.92 -0.32 1.20 16
18 C -0.14 -3.10 9.46 37.16 0.35 -2.74 16
19 C -0.61 -15.65 8.50 -34.44 -0.29 -15.95 16
20 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16
21 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16
22 N -0.89 -25.33 13.63 55.43 0.76 -24.57 16
23 Si 1.07 23.12 29.91 -169.99 -5.08 18.03 16
24 H -0.29 -5.86 7.11 56.52 0.40 -5.45 16
25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
26 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16
27 C -0.14 -2.02 5.81 -26.48 -0.15 -2.18 16
28 C -0.08 -1.05 9.26 -39.18 -0.36 -1.41 16
29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16
31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16
32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16
33 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16
36 H 0.10 1.69 5.19 -51.93 -0.27 1.42 16
37 H 0.39 7.22 8.59 -40.82 -0.35 6.87 16
38 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16
39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16
41 H 0.28 8.28 6.66 -40.82 -0.27 8.01 16
42 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16
43 H 0.11 1.73 7.72 -51.93 -0.40 1.33 16
44 H 0.13 1.58 7.37 -52.48 -0.39 1.20 16
LS Contribution 369.17 15.07 5.56 5.56
Total: -1.00 -33.13 369.17 -8.96 -42.09
By element:
Atomic # 1 Polarization: 16.80 SS G_CDS: -6.27 Total: 10.54 kcal
Atomic # 6 Polarization: -10.15 SS G_CDS: -3.39 Total: -13.54 kcal
Atomic # 7 Polarization: -45.27 SS G_CDS: 0.79 Total: -44.47 kcal
Atomic # 8 Polarization: -17.63 SS G_CDS: -0.57 Total: -18.20 kcal
Atomic # 14 Polarization: 23.12 SS G_CDS: -5.08 Total: 18.03 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.13 -8.96 -42.09 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000900433411.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.963 kcal
(2) G-P(sol) polarization free energy of solvation -33.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.96 seconds