Wall clock time and date at job start Tue Mar 31 2020 12:04:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38377 * 119.92389 * 2 1
4 4 C 1.38334 * 120.30017 * 179.97438 * 3 2 1
5 5 C 1.37971 * 120.15074 * 359.78067 * 4 3 2
6 6 C 1.50703 * 120.07914 * 180.23304 * 5 4 3
7 7 C 1.39592 * 119.84737 * 0.47708 * 5 4 3
8 8 C 1.47641 * 120.14829 * 179.79094 * 7 5 4
9 9 N 1.29081 * 125.86784 * 359.68639 * 8 7 5
10 10 O 1.41394 * 112.87251 * 180.30379 * 9 8 7
11 11 C 1.44207 * 107.59414 * 342.50632 * 10 9 8
12 12 H 1.09000 * 110.97098 * 143.55961 * 11 10 9
13 13 C 1.50699 * 110.97180 * 267.28788 * 11 10 9
14 14 O 1.21282 * 120.00436 * 3.54829 * 13 11 10
15 15 N 1.34775 * 119.99942 * 183.54989 * 13 11 10
16 16 C 1.46502 * 120.00177 * 180.02562 * 15 13 11
17 17 H 1.09007 * 109.46841 * 35.00032 * 16 15 13
18 18 C 1.52997 * 109.47000 * 275.00249 * 16 15 13
19 19 C 1.50701 * 109.47209 * 154.99479 * 16 15 13
20 20 H 1.08000 * 119.99705 * 95.25691 * 19 16 15
21 21 C 1.37878 * 120.00319 * 275.25883 * 19 16 15
22 22 N 1.31510 * 119.99568 * 355.14973 * 21 19 16
23 23 Si 1.86797 * 119.99899 * 175.15335 * 21 19 16
24 24 H 1.48501 * 109.47350 * 359.97438 * 23 21 19
25 25 H 1.48495 * 109.47023 * 119.99727 * 23 21 19
26 26 H 1.48499 * 109.47168 * 239.99787 * 23 21 19
27 27 C 1.51696 * 125.86418 * 179.67341 * 8 7 5
28 28 C 1.37929 * 119.92710 * 179.97438 * 2 1 3
29 29 H 1.08998 * 109.47126 * 270.02071 * 1 2 3
30 30 H 1.09004 * 109.47230 * 30.02478 * 1 2 3
31 31 H 1.08996 * 109.46892 * 150.02027 * 1 2 3
32 32 H 1.08006 * 119.84937 * 359.97330 * 3 2 1
33 33 H 1.08006 * 119.92211 * 180.02562 * 4 3 2
34 34 H 1.08998 * 109.47218 * 270.24065 * 6 5 4
35 35 H 1.08998 * 109.46729 * 30.23729 * 6 5 4
36 36 H 1.08999 * 109.47123 * 150.23757 * 6 5 4
37 37 H 0.96996 * 120.00061 * 0.02562 * 15 13 11
38 38 H 1.09002 * 109.47007 * 295.02760 * 18 16 15
39 39 H 1.08997 * 109.47323 * 55.03017 * 18 16 15
40 40 H 1.09006 * 109.46933 * 175.02900 * 18 16 15
41 41 H 0.97001 * 120.00702 * 5.13434 * 22 21 19
42 42 H 1.08997 * 110.79293 * 77.13948 * 27 8 7
43 43 H 1.09001 * 110.78751 * 313.66672 * 27 8 7
44 44 H 1.08006 * 120.07293 * 0.04474 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1973 1.1993 0.0000
4 6 3.5806 1.2084 0.0005
5 6 4.2814 0.0199 0.0056
6 6 5.7884 0.0317 0.0115
7 6 3.5914 -1.1935 0.0002
8 6 4.3347 -2.4692 0.0009
9 7 5.6193 -2.5961 0.0006
10 8 6.0381 -3.9465 -0.0054
11 6 4.9150 -4.7531 0.4040
12 1 4.8944 -5.6977 -0.1395
13 6 4.9353 -4.9905 1.8920
14 8 5.7880 -4.4677 2.5780
15 7 4.0060 -5.7840 2.4606
16 6 4.0254 -6.0144 3.9072
17 1 4.3564 -5.1084 4.4150
18 6 4.9878 -7.1596 4.2283
19 6 2.6398 -6.3757 4.3770
20 1 2.3579 -7.4132 4.4796
21 6 1.7320 -5.3819 4.6757
22 7 2.1034 -4.1207 4.6429
23 14 -0.0251 -5.8268 5.1271
24 1 -0.1869 -7.3026 5.0912
25 1 -0.3266 -5.3285 6.4930
26 1 -0.9589 -5.2032 4.1553
27 6 3.7199 -3.8560 0.0025
28 6 2.1952 -1.1954 0.0005
29 1 -0.3633 0.0004 1.0276
30 1 -0.3634 0.8898 -0.5142
31 1 -0.3633 -0.8901 -0.5135
32 1 1.6536 2.1325 -0.0004
33 1 4.1132 2.1480 0.0009
34 1 6.1557 0.0368 -1.0147
35 1 6.1427 0.9234 0.5287
36 1 6.1567 -0.8565 0.5249
37 1 3.3243 -6.2025 1.9119
38 1 4.6095 -8.0848 3.7936
39 1 5.9697 -6.9369 3.8110
40 1 5.0697 -7.2730 5.3094
41 1 2.9931 -3.8848 4.3369
42 1 3.3553 -4.1187 -0.9905
43 1 2.9203 -3.9238 0.7401
44 1 1.6551 -2.1307 0.0002
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000900433411.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:54
Heat of formation + Delta-G solvation = -25.907220 kcal
Electronic energy + Delta-G solvation = -26705.681936 eV
Core-core repulsion = 23009.524362 eV
Total energy + Delta-G solvation = -3696.157574 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.93619 -40.54989 -39.60867 -36.90070 -35.47028 -34.34998 -34.04846 -32.54164
-31.40038 -30.81256 -30.05575 -26.82882 -25.99438 -25.78417 -24.52642 -23.16627
-22.27010 -21.45451 -20.49751 -19.47679 -18.46980 -17.79827 -17.09913 -16.83222
-16.65449 -16.05884 -15.97621 -15.78427 -15.58682 -15.41769 -15.04557 -14.95035
-14.42522 -14.18487 -14.08657 -13.87203 -13.76051 -13.52666 -13.43586 -13.15013
-13.02853 -12.92948 -12.89723 -12.67694 -12.59582 -12.28231 -12.11351 -12.04721
-11.87688 -11.69991 -11.33637 -11.03670 -10.57383 -10.47254 -9.80995 -9.70166
-9.39035 -8.71780 -6.54088 -0.34715 0.35421 1.14924 1.50337 1.57380
1.61881 1.81732 1.95113 2.30889 2.53775 2.73429 2.87768 3.18793
3.25456 3.33001 3.79061 3.82232 3.88850 3.99411 4.06625 4.25454
4.28122 4.35325 4.44913 4.46317 4.51542 4.64968 4.66350 4.68262
4.72095 4.77357 4.85213 4.88926 5.00424 5.11615 5.21695 5.23792
5.32914 5.38242 5.55066 5.59849 5.67262 5.86966 5.96990 6.09271
6.19573 6.41327 6.84119 7.35460 7.37746 8.62024
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.010832 B = 0.004947 C = 0.003711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2584.427402 B = 5658.194626 C = 7542.335293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.101 4.101
3 C -0.092 4.092
4 C -0.125 4.125
5 C -0.068 4.068
6 C -0.128 4.128
7 C -0.070 4.070
8 C 0.128 3.872
9 N -0.301 5.301
10 O -0.203 6.203
11 C 0.027 3.973
12 H 0.177 0.823
13 C 0.475 3.525
14 O -0.595 6.595
15 N -0.690 5.690
16 C 0.236 3.764
17 H 0.001 0.999
18 C -0.131 4.131
19 C -0.611 4.611
20 H 0.065 0.935
21 C -0.015 4.015
22 N -0.915 5.915
23 Si 1.124 2.876
24 H -0.265 1.265
25 H -0.288 1.288
26 H -0.273 1.273
27 C -0.129 4.129
28 C -0.089 4.089
29 H 0.070 0.930
30 H 0.089 0.911
31 H 0.074 0.926
32 H 0.158 0.842
33 H 0.153 0.847
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.067 0.933
37 H 0.402 0.598
38 H 0.063 0.937
39 H 0.026 0.974
40 H 0.052 0.948
41 H 0.254 0.746
42 H 0.158 0.842
43 H 0.104 0.896
44 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.075 6.972 -14.851 17.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.101 4.101
3 C -0.111 4.111
4 C -0.143 4.143
5 C -0.070 4.070
6 C -0.184 4.184
7 C -0.071 4.071
8 C -0.060 4.060
9 N -0.046 5.046
10 O -0.218 6.218
11 C -0.035 4.035
12 H 0.194 0.806
13 C 0.261 3.739
14 O -0.477 6.477
15 N -0.341 5.341
16 C 0.135 3.865
17 H 0.019 0.981
18 C -0.189 4.189
19 C -0.649 4.649
20 H 0.084 0.916
21 C -0.217 4.217
22 N -0.550 5.550
23 Si 0.945 3.055
24 H -0.189 1.189
25 H -0.214 1.214
26 H -0.199 1.199
27 C -0.168 4.168
28 C -0.109 4.109
29 H 0.088 0.912
30 H 0.108 0.892
31 H 0.093 0.907
32 H 0.176 0.824
33 H 0.170 0.830
34 H 0.099 0.901
35 H 0.099 0.901
36 H 0.086 0.914
37 H 0.238 0.762
38 H 0.082 0.918
39 H 0.045 0.955
40 H 0.071 0.929
41 H 0.065 0.935
42 H 0.175 0.825
43 H 0.122 0.878
44 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -5.657 8.280 -13.915 17.152
hybrid contribution 1.192 -1.391 -0.152 1.838
sum -4.465 6.889 -14.067 16.288
Atomic orbital electron populations
1.20844 0.88743 1.04285 1.02982 1.20174 0.97863 0.92363 0.99736
1.21606 0.93954 0.98731 0.96806 1.21277 0.94707 0.97463 1.00857
1.20324 0.96878 0.92573 0.97225 1.21143 0.90621 1.03521 1.03122
1.17920 0.93200 0.88364 1.07618 1.24716 0.91962 0.96196 0.93128
1.78503 1.14076 0.96523 1.15470 1.91237 1.33247 1.11665 1.85614
1.23890 0.87463 0.99757 0.92361 0.80638 1.21610 0.81915 0.79343
0.91047 1.90642 1.39557 1.51978 1.65503 1.47203 1.29326 1.47035
1.10505 1.18670 0.95887 0.93658 0.78321 0.98078 1.21880 0.97288
0.99087 1.00646 1.22368 0.97589 0.95646 1.49285 0.91629 1.27490
1.08818 0.92628 0.92750 1.70850 1.21758 1.19448 1.42906 0.82855
0.69721 0.76139 0.76802 1.18892 1.21389 1.19877 1.23037 0.98708
0.87834 1.07270 1.21321 0.91602 0.99754 0.98188 0.91153 0.89233
0.90676 0.82414 0.82980 0.90117 0.90138 0.91425 0.76220 0.91790
0.95515 0.92940 0.93524 0.82466 0.87813 0.84517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16
2 C -0.10 -2.20 5.87 -19.90 -0.12 -2.31 16
3 C -0.09 -1.79 9.69 22.33 0.22 -1.58 16
4 C -0.13 -2.74 9.69 22.23 0.22 -2.52 16
5 C -0.07 -1.92 5.91 -19.60 -0.12 -2.03 16
6 C -0.13 -3.60 9.18 71.24 0.65 -2.94 16
7 C -0.07 -2.13 5.87 -20.13 -0.12 -2.25 16
8 C 0.13 4.32 7.05 45.77 0.32 4.64 16
9 N -0.30 -11.62 8.97 -42.23 -0.38 -12.00 16
10 O -0.20 -8.08 11.83 -20.31 -0.24 -8.32 16
11 C 0.03 0.92 4.23 30.44 0.13 1.05 16
12 H 0.18 4.20 8.14 -2.39 -0.02 4.18 16
13 C 0.48 21.13 7.10 87.66 0.62 21.75 16
14 O -0.60 -33.12 16.25 14.97 0.24 -32.88 16
15 N -0.69 -29.73 5.07 -446.09 -2.26 -31.99 16
16 C 0.24 11.93 2.28 44.24 0.10 12.03 16
17 H 0.00 0.07 6.11 -2.38 -0.01 0.06 16
18 C -0.13 -5.79 9.46 71.98 0.68 -5.11 16
19 C -0.61 -31.36 8.50 25.60 0.22 -31.14 16
20 H 0.07 3.24 7.81 -2.91 -0.02 3.21 16
21 C -0.01 -0.78 5.45 84.66 0.46 -0.32 16
22 N -0.91 -53.57 13.63 21.45 0.29 -53.28 16
23 Si 1.12 45.40 29.91 68.60 2.05 47.45 16
24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16
25 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16
26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16
27 C -0.13 -3.66 5.81 30.76 0.18 -3.48 16
28 C -0.09 -2.32 9.26 22.53 0.21 -2.11 16
29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
30 H 0.09 1.00 8.08 -2.38 -0.02 0.98 16
31 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16
32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16
33 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16
34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16
35 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16
36 H 0.07 2.42 5.19 -2.39 -0.01 2.41 16
37 H 0.40 14.68 8.59 -92.71 -0.80 13.89 16
38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16
39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16
41 H 0.25 15.98 6.66 -92.71 -0.62 15.36 16
42 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16
43 H 0.10 3.15 7.72 -2.39 -0.02 3.13 16
44 H 0.14 3.21 7.37 -2.91 -0.02 3.19 16
Total: -1.00 -76.83 369.17 4.45 -72.37
By element:
Atomic # 1 Polarization: 35.66 SS G_CDS: 0.38 Total: 36.04 kcal
Atomic # 6 Polarization: -21.76 SS G_CDS: 4.37 Total: -17.39 kcal
Atomic # 7 Polarization: -94.93 SS G_CDS: -2.35 Total: -97.28 kcal
Atomic # 8 Polarization: -41.20 SS G_CDS: 0.00 Total: -41.20 kcal
Atomic # 14 Polarization: 45.40 SS G_CDS: 2.05 Total: 47.45 kcal
Total: -76.83 4.45 -72.37 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000900433411.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.467 kcal
(2) G-P(sol) polarization free energy of solvation -76.828 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds