Wall clock time and date at job start Tue Mar 31 2020 12:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38377 * 119.92389 * 2 1 4 4 C 1.38334 * 120.30017 * 179.97438 * 3 2 1 5 5 C 1.37971 * 120.15074 * 359.78067 * 4 3 2 6 6 C 1.50703 * 120.07914 * 180.23304 * 5 4 3 7 7 C 1.39592 * 119.84737 * 0.47708 * 5 4 3 8 8 C 1.47641 * 120.14829 * 179.79094 * 7 5 4 9 9 N 1.29081 * 125.86784 * 359.68639 * 8 7 5 10 10 O 1.41394 * 112.87251 * 180.30379 * 9 8 7 11 11 C 1.44207 * 107.59414 * 342.50632 * 10 9 8 12 12 H 1.09000 * 110.97098 * 143.55961 * 11 10 9 13 13 C 1.50699 * 110.97180 * 267.28788 * 11 10 9 14 14 O 1.21282 * 120.00436 * 3.54829 * 13 11 10 15 15 N 1.34775 * 119.99942 * 183.54989 * 13 11 10 16 16 C 1.46502 * 120.00177 * 180.02562 * 15 13 11 17 17 H 1.09007 * 109.46841 * 35.00032 * 16 15 13 18 18 C 1.52997 * 109.47000 * 275.00249 * 16 15 13 19 19 C 1.50701 * 109.47209 * 154.99479 * 16 15 13 20 20 H 1.08000 * 119.99705 * 95.25691 * 19 16 15 21 21 C 1.37878 * 120.00319 * 275.25883 * 19 16 15 22 22 N 1.31510 * 119.99568 * 355.14973 * 21 19 16 23 23 Si 1.86797 * 119.99899 * 175.15335 * 21 19 16 24 24 H 1.48501 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47023 * 119.99727 * 23 21 19 26 26 H 1.48499 * 109.47168 * 239.99787 * 23 21 19 27 27 C 1.51696 * 125.86418 * 179.67341 * 8 7 5 28 28 C 1.37929 * 119.92710 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47126 * 270.02071 * 1 2 3 30 30 H 1.09004 * 109.47230 * 30.02478 * 1 2 3 31 31 H 1.08996 * 109.46892 * 150.02027 * 1 2 3 32 32 H 1.08006 * 119.84937 * 359.97330 * 3 2 1 33 33 H 1.08006 * 119.92211 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47218 * 270.24065 * 6 5 4 35 35 H 1.08998 * 109.46729 * 30.23729 * 6 5 4 36 36 H 1.08999 * 109.47123 * 150.23757 * 6 5 4 37 37 H 0.96996 * 120.00061 * 0.02562 * 15 13 11 38 38 H 1.09002 * 109.47007 * 295.02760 * 18 16 15 39 39 H 1.08997 * 109.47323 * 55.03017 * 18 16 15 40 40 H 1.09006 * 109.46933 * 175.02900 * 18 16 15 41 41 H 0.97001 * 120.00702 * 5.13434 * 22 21 19 42 42 H 1.08997 * 110.79293 * 77.13948 * 27 8 7 43 43 H 1.09001 * 110.78751 * 313.66672 * 27 8 7 44 44 H 1.08006 * 120.07293 * 0.04474 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2084 0.0005 5 6 4.2814 0.0199 0.0056 6 6 5.7884 0.0317 0.0115 7 6 3.5914 -1.1935 0.0002 8 6 4.3347 -2.4692 0.0009 9 7 5.6193 -2.5961 0.0006 10 8 6.0381 -3.9465 -0.0054 11 6 4.9150 -4.7531 0.4040 12 1 4.8944 -5.6977 -0.1395 13 6 4.9353 -4.9905 1.8920 14 8 5.7880 -4.4677 2.5780 15 7 4.0060 -5.7840 2.4606 16 6 4.0254 -6.0144 3.9072 17 1 4.3564 -5.1084 4.4150 18 6 4.9878 -7.1596 4.2283 19 6 2.6398 -6.3757 4.3770 20 1 2.3579 -7.4132 4.4796 21 6 1.7320 -5.3819 4.6757 22 7 2.1034 -4.1207 4.6429 23 14 -0.0251 -5.8268 5.1271 24 1 -0.1869 -7.3026 5.0912 25 1 -0.3266 -5.3285 6.4930 26 1 -0.9589 -5.2032 4.1553 27 6 3.7199 -3.8560 0.0025 28 6 2.1952 -1.1954 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6536 2.1325 -0.0004 33 1 4.1132 2.1480 0.0009 34 1 6.1557 0.0368 -1.0147 35 1 6.1427 0.9234 0.5287 36 1 6.1567 -0.8565 0.5249 37 1 3.3243 -6.2025 1.9119 38 1 4.6095 -8.0848 3.7936 39 1 5.9697 -6.9369 3.8110 40 1 5.0697 -7.2730 5.3094 41 1 2.9931 -3.8848 4.3369 42 1 3.3553 -4.1187 -0.9905 43 1 2.9203 -3.9238 0.7401 44 1 1.6551 -2.1307 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900433411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:54 Heat of formation + Delta-G solvation = -25.907220 kcal Electronic energy + Delta-G solvation = -26705.681936 eV Core-core repulsion = 23009.524362 eV Total energy + Delta-G solvation = -3696.157574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93619 -40.54989 -39.60867 -36.90070 -35.47028 -34.34998 -34.04846 -32.54164 -31.40038 -30.81256 -30.05575 -26.82882 -25.99438 -25.78417 -24.52642 -23.16627 -22.27010 -21.45451 -20.49751 -19.47679 -18.46980 -17.79827 -17.09913 -16.83222 -16.65449 -16.05884 -15.97621 -15.78427 -15.58682 -15.41769 -15.04557 -14.95035 -14.42522 -14.18487 -14.08657 -13.87203 -13.76051 -13.52666 -13.43586 -13.15013 -13.02853 -12.92948 -12.89723 -12.67694 -12.59582 -12.28231 -12.11351 -12.04721 -11.87688 -11.69991 -11.33637 -11.03670 -10.57383 -10.47254 -9.80995 -9.70166 -9.39035 -8.71780 -6.54088 -0.34715 0.35421 1.14924 1.50337 1.57380 1.61881 1.81732 1.95113 2.30889 2.53775 2.73429 2.87768 3.18793 3.25456 3.33001 3.79061 3.82232 3.88850 3.99411 4.06625 4.25454 4.28122 4.35325 4.44913 4.46317 4.51542 4.64968 4.66350 4.68262 4.72095 4.77357 4.85213 4.88926 5.00424 5.11615 5.21695 5.23792 5.32914 5.38242 5.55066 5.59849 5.67262 5.86966 5.96990 6.09271 6.19573 6.41327 6.84119 7.35460 7.37746 8.62024 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.004947 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.427402 B = 5658.194626 C = 7542.335293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.125 4.125 5 C -0.068 4.068 6 C -0.128 4.128 7 C -0.070 4.070 8 C 0.128 3.872 9 N -0.301 5.301 10 O -0.203 6.203 11 C 0.027 3.973 12 H 0.177 0.823 13 C 0.475 3.525 14 O -0.595 6.595 15 N -0.690 5.690 16 C 0.236 3.764 17 H 0.001 0.999 18 C -0.131 4.131 19 C -0.611 4.611 20 H 0.065 0.935 21 C -0.015 4.015 22 N -0.915 5.915 23 Si 1.124 2.876 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.273 1.273 27 C -0.129 4.129 28 C -0.089 4.089 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.158 0.842 43 H 0.104 0.896 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 6.972 -14.851 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.143 4.143 5 C -0.070 4.070 6 C -0.184 4.184 7 C -0.071 4.071 8 C -0.060 4.060 9 N -0.046 5.046 10 O -0.218 6.218 11 C -0.035 4.035 12 H 0.194 0.806 13 C 0.261 3.739 14 O -0.477 6.477 15 N -0.341 5.341 16 C 0.135 3.865 17 H 0.019 0.981 18 C -0.189 4.189 19 C -0.649 4.649 20 H 0.084 0.916 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.945 3.055 24 H -0.189 1.189 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.168 4.168 28 C -0.109 4.109 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.175 0.825 43 H 0.122 0.878 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.657 8.280 -13.915 17.152 hybrid contribution 1.192 -1.391 -0.152 1.838 sum -4.465 6.889 -14.067 16.288 Atomic orbital electron populations 1.20844 0.88743 1.04285 1.02982 1.20174 0.97863 0.92363 0.99736 1.21606 0.93954 0.98731 0.96806 1.21277 0.94707 0.97463 1.00857 1.20324 0.96878 0.92573 0.97225 1.21143 0.90621 1.03521 1.03122 1.17920 0.93200 0.88364 1.07618 1.24716 0.91962 0.96196 0.93128 1.78503 1.14076 0.96523 1.15470 1.91237 1.33247 1.11665 1.85614 1.23890 0.87463 0.99757 0.92361 0.80638 1.21610 0.81915 0.79343 0.91047 1.90642 1.39557 1.51978 1.65503 1.47203 1.29326 1.47035 1.10505 1.18670 0.95887 0.93658 0.78321 0.98078 1.21880 0.97288 0.99087 1.00646 1.22368 0.97589 0.95646 1.49285 0.91629 1.27490 1.08818 0.92628 0.92750 1.70850 1.21758 1.19448 1.42906 0.82855 0.69721 0.76139 0.76802 1.18892 1.21389 1.19877 1.23037 0.98708 0.87834 1.07270 1.21321 0.91602 0.99754 0.98188 0.91153 0.89233 0.90676 0.82414 0.82980 0.90117 0.90138 0.91425 0.76220 0.91790 0.95515 0.92940 0.93524 0.82466 0.87813 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.20 5.87 -19.90 -0.12 -2.31 16 3 C -0.09 -1.79 9.69 22.33 0.22 -1.58 16 4 C -0.13 -2.74 9.69 22.23 0.22 -2.52 16 5 C -0.07 -1.92 5.91 -19.60 -0.12 -2.03 16 6 C -0.13 -3.60 9.18 71.24 0.65 -2.94 16 7 C -0.07 -2.13 5.87 -20.13 -0.12 -2.25 16 8 C 0.13 4.32 7.05 45.77 0.32 4.64 16 9 N -0.30 -11.62 8.97 -42.23 -0.38 -12.00 16 10 O -0.20 -8.08 11.83 -20.31 -0.24 -8.32 16 11 C 0.03 0.92 4.23 30.44 0.13 1.05 16 12 H 0.18 4.20 8.14 -2.39 -0.02 4.18 16 13 C 0.48 21.13 7.10 87.66 0.62 21.75 16 14 O -0.60 -33.12 16.25 14.97 0.24 -32.88 16 15 N -0.69 -29.73 5.07 -446.09 -2.26 -31.99 16 16 C 0.24 11.93 2.28 44.24 0.10 12.03 16 17 H 0.00 0.07 6.11 -2.38 -0.01 0.06 16 18 C -0.13 -5.79 9.46 71.98 0.68 -5.11 16 19 C -0.61 -31.36 8.50 25.60 0.22 -31.14 16 20 H 0.07 3.24 7.81 -2.91 -0.02 3.21 16 21 C -0.01 -0.78 5.45 84.66 0.46 -0.32 16 22 N -0.91 -53.57 13.63 21.45 0.29 -53.28 16 23 Si 1.12 45.40 29.91 68.60 2.05 47.45 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 C -0.13 -3.66 5.81 30.76 0.18 -3.48 16 28 C -0.09 -2.32 9.26 22.53 0.21 -2.11 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.00 8.08 -2.38 -0.02 0.98 16 31 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.07 2.42 5.19 -2.39 -0.01 2.41 16 37 H 0.40 14.68 8.59 -92.71 -0.80 13.89 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.25 15.98 6.66 -92.71 -0.62 15.36 16 42 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.10 3.15 7.72 -2.39 -0.02 3.13 16 44 H 0.14 3.21 7.37 -2.91 -0.02 3.19 16 Total: -1.00 -76.83 369.17 4.45 -72.37 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.38 Total: 36.04 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.37 Total: -17.39 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -2.35 Total: -97.28 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: 0.00 Total: -41.20 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.05 Total: 47.45 kcal Total: -76.83 4.45 -72.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.467 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds