Wall clock time and date at job start Tue Mar 31 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38378 * 119.92725 * 2 1 4 4 C 1.38334 * 120.29798 * 180.25849 * 3 2 1 5 5 C 1.37970 * 120.15151 * 359.48403 * 4 3 2 6 6 C 1.50699 * 120.07619 * 180.26282 * 5 4 3 7 7 C 1.39593 * 119.85018 * 0.48999 * 5 4 3 8 8 C 1.47636 * 120.15150 * 179.78951 * 7 5 4 9 9 N 1.29086 * 125.86628 * 0.02562 * 8 7 5 10 10 O 1.41388 * 112.87502 * 179.64149 * 9 8 7 11 11 C 1.44205 * 107.59258 * 17.49828 * 10 9 8 12 12 H 1.08999 * 110.98068 * 92.74996 * 11 10 9 13 13 C 1.50704 * 110.96998 * 216.48023 * 11 10 9 14 14 O 1.21283 * 120.00221 * 3.54651 * 13 11 10 15 15 N 1.34783 * 119.99996 * 183.54419 * 13 11 10 16 16 C 1.46494 * 120.00081 * 179.97438 * 15 13 11 17 17 H 1.09002 * 109.47264 * 325.00148 * 16 15 13 18 18 C 1.52999 * 109.47311 * 85.00031 * 16 15 13 19 19 C 1.50697 * 109.47183 * 205.00193 * 16 15 13 20 20 H 1.07996 * 120.00150 * 359.97438 * 19 16 15 21 21 C 1.37881 * 119.99800 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00258 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99693 * 179.97438 * 21 19 16 24 24 H 1.48495 * 109.47273 * 90.00094 * 23 21 19 25 25 H 1.48507 * 109.46829 * 209.99709 * 23 21 19 26 26 H 1.48494 * 109.47235 * 329.99433 * 23 21 19 27 27 C 1.51693 * 125.86873 * 179.69178 * 8 7 5 28 28 C 1.37937 * 119.91996 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46668 * 89.99999 * 1 2 3 30 30 H 1.08996 * 109.47346 * 209.99879 * 1 2 3 31 31 H 1.08999 * 109.46710 * 330.00338 * 1 2 3 32 32 H 1.08002 * 119.84639 * 359.97320 * 3 2 1 33 33 H 1.08000 * 119.92225 * 179.74909 * 4 3 2 34 34 H 1.09007 * 109.46851 * 270.22833 * 6 5 4 35 35 H 1.08996 * 109.47532 * 30.22922 * 6 5 4 36 36 H 1.09002 * 109.47717 * 150.23083 * 6 5 4 37 37 H 0.96992 * 119.99818 * 0.02562 * 15 13 11 38 38 H 1.09002 * 109.47522 * 180.02562 * 18 16 15 39 39 H 1.08999 * 109.47169 * 300.00198 * 18 16 15 40 40 H 1.09000 * 109.47373 * 59.99847 * 18 16 15 41 41 H 0.97005 * 120.00130 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.79245 * 282.91350 * 27 8 7 43 43 H 1.09003 * 110.78899 * 46.37775 * 27 8 7 44 44 H 1.07997 * 120.07816 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 -0.0054 5 6 4.2814 0.0197 -0.0001 6 6 5.7884 0.0315 0.0000 7 6 3.5914 -1.1937 0.0004 8 6 4.3345 -2.4694 0.0014 9 7 5.6191 -2.5963 0.0024 10 8 6.0380 -3.9467 0.0113 11 6 4.9150 -4.7541 -0.3968 12 1 4.9303 -4.9287 -1.4726 13 6 4.8857 -6.0581 0.3580 14 8 5.7038 -6.2745 1.2269 15 7 3.9502 -6.9840 0.0676 16 6 3.9220 -8.2519 0.8010 17 1 4.9413 -8.5586 1.0358 18 6 3.1315 -8.0731 2.0987 19 6 3.2625 -9.3084 -0.0475 20 1 2.9001 -9.0601 -1.0341 21 6 3.1207 -10.5917 0.4363 22 7 3.5615 -10.8939 1.6380 23 14 2.3025 -11.9011 -0.6151 24 1 3.3301 -12.5901 -1.4362 25 1 1.6261 -12.8895 0.2629 26 1 1.3007 -11.2647 -1.5075 27 6 3.7198 -3.8562 0.0087 28 6 2.1951 -1.1955 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6537 2.1324 -0.0004 33 1 4.1134 2.1477 -0.0095 34 1 6.1518 0.0339 -1.0277 35 1 6.1448 0.9245 0.5135 36 1 6.1587 -0.8554 0.5142 37 1 3.2962 -6.8111 -0.6274 38 1 3.1109 -9.0163 2.6446 39 1 3.6086 -7.3089 2.7123 40 1 2.1123 -7.7664 1.8639 41 1 3.4614 -11.7967 1.9785 42 1 3.3591 -4.1143 1.0043 43 1 2.9171 -3.9273 -0.7253 44 1 1.6550 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900433412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:01 Heat of formation + Delta-G solvation = 2.867407 kcal Electronic energy + Delta-G solvation = -25683.241987 eV Core-core repulsion = 21988.332175 eV Total energy + Delta-G solvation = -3694.909812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71199 -39.58675 -38.27455 -34.94526 -34.58973 -33.23937 -32.55414 -31.08848 -30.52147 -29.53341 -28.63861 -25.33235 -25.27703 -24.47638 -23.72996 -21.53914 -21.22141 -19.66579 -19.45556 -17.68167 -16.90481 -16.44098 -15.98425 -15.80963 -15.29598 -15.21419 -14.92668 -14.56864 -14.35845 -14.00291 -13.69037 -13.42784 -13.34965 -13.13329 -13.00103 -12.74821 -12.61917 -12.40272 -12.32369 -12.00594 -11.79101 -11.67963 -11.58901 -11.38992 -11.13690 -11.01530 -10.81717 -10.42161 -10.36416 -10.29136 -10.12705 -9.14328 -9.10738 -8.94010 -8.61663 -8.59484 -8.04165 -6.17238 -4.27261 0.45742 1.03254 2.03088 2.76543 3.15244 3.21756 3.28419 3.29757 3.44422 3.72906 3.97098 4.28252 4.36085 4.47521 4.50428 4.58821 4.68038 4.86675 4.87666 4.97549 5.15259 5.18975 5.24198 5.28485 5.35478 5.40256 5.46454 5.51636 5.57304 5.66493 5.69409 5.74490 6.03895 6.14335 6.22989 6.35779 6.63325 6.74940 6.87969 7.07087 7.23276 7.34138 7.47746 7.62266 7.84000 8.08143 8.52057 8.70056 8.97023 9.40171 10.88760 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002761 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.955132 B =10138.252631 C =11122.846595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.048 4.048 6 C -0.135 4.135 7 C -0.041 4.041 8 C 0.124 3.876 9 N -0.279 5.279 10 O -0.168 6.168 11 C 0.025 3.975 12 H 0.108 0.892 13 C 0.506 3.494 14 O -0.528 6.528 15 N -0.702 5.702 16 C 0.265 3.735 17 H 0.050 0.950 18 C -0.147 4.147 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.136 4.136 28 C -0.082 4.082 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.389 0.611 38 H 0.092 0.908 39 H 0.014 0.986 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 23.871 -5.448 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.141 4.141 5 C -0.050 4.050 6 C -0.191 4.191 7 C -0.042 4.042 8 C -0.065 4.065 9 N -0.020 5.020 10 O -0.186 6.186 11 C -0.037 4.037 12 H 0.126 0.874 13 C 0.288 3.712 14 O -0.404 6.404 15 N -0.351 5.351 16 C 0.164 3.836 17 H 0.068 0.932 18 C -0.206 4.206 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.175 4.175 28 C -0.102 4.102 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.222 0.778 38 H 0.110 0.890 39 H 0.033 0.967 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.691 23.869 -4.603 24.757 hybrid contribution -1.549 -1.191 -0.957 2.176 sum -6.239 22.678 -5.561 24.169 Atomic orbital electron populations 1.20797 0.90638 1.03104 1.02555 1.19806 0.96381 0.92671 1.00832 1.21201 0.94141 0.97682 0.98660 1.20989 0.94049 0.97481 1.01548 1.20142 0.96830 0.91762 0.96242 1.21254 0.90162 1.04451 1.03230 1.17712 0.92330 0.88568 1.05561 1.24219 0.92260 0.94545 0.95435 1.78448 1.13011 0.97936 1.12558 1.91385 1.30065 1.09752 1.87375 1.23683 0.86697 0.92782 1.00547 0.87414 1.19825 0.82764 0.84433 0.84196 1.90720 1.39087 1.78523 1.32113 1.46476 1.30959 1.18421 1.39264 1.18803 0.97884 0.77762 0.89145 0.93211 1.22088 0.97715 1.01818 0.98998 1.21185 1.40302 0.94266 1.01659 0.91977 1.24894 0.95258 0.98394 0.95138 1.69900 1.45462 1.20314 1.16282 0.86425 0.79423 0.81146 0.79968 1.20513 1.21033 1.19821 1.22964 0.99893 0.88856 1.05837 1.21131 0.92173 0.98483 0.98419 0.90994 0.91206 0.91417 0.85678 0.85428 0.90719 0.91657 0.88056 0.77822 0.88971 0.96662 0.95360 0.92471 0.87166 0.87117 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.10 -0.77 5.87 -104.68 -0.61 -1.38 16 3 C -0.10 -0.73 9.69 -39.49 -0.38 -1.12 16 4 C -0.12 -1.02 9.69 -39.64 -0.38 -1.40 16 5 C -0.05 -0.49 5.91 -104.22 -0.62 -1.11 16 6 C -0.13 -1.38 9.18 36.01 0.33 -1.05 16 7 C -0.04 -0.45 5.87 -105.03 -0.62 -1.06 16 8 C 0.12 1.61 7.05 -79.42 -0.56 1.05 16 9 N -0.28 -4.33 8.97 35.30 0.32 -4.01 16 10 O -0.17 -3.11 11.82 -30.20 -0.36 -3.46 16 11 C 0.03 0.40 4.25 -26.88 -0.11 0.29 16 12 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 13 C 0.51 10.29 7.09 -10.98 -0.08 10.21 16 14 O -0.53 -13.36 16.25 -13.28 -0.22 -13.57 16 15 N -0.70 -14.11 5.07 -54.93 -0.28 -14.39 16 16 C 0.27 6.64 2.56 -69.09 -0.18 6.46 16 17 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 19 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 23 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.14 -1.68 5.81 -26.40 -0.15 -1.83 16 28 C -0.08 -0.75 9.26 -39.17 -0.36 -1.11 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.10 1.28 5.18 -51.93 -0.27 1.01 16 37 H 0.39 6.48 8.54 -40.82 -0.35 6.13 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.11 1.43 7.91 -51.93 -0.41 1.02 16 43 H 0.11 0.97 7.95 -51.93 -0.41 0.56 16 44 H 0.13 0.98 7.37 -52.49 -0.39 0.60 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -32.80 367.55 -9.11 -41.90 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.30 Total: 4.80 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.42 Total: -8.09 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.67 Total: -42.38 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.57 Total: -17.04 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.80 -9.11 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.772 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds