Wall clock time and date at job start Tue Mar 31 2020 12:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38378 * 119.92725 * 2 1 4 4 C 1.38334 * 120.29798 * 180.25849 * 3 2 1 5 5 C 1.37970 * 120.15151 * 359.48403 * 4 3 2 6 6 C 1.50699 * 120.07619 * 180.26282 * 5 4 3 7 7 C 1.39593 * 119.85018 * 0.48999 * 5 4 3 8 8 C 1.47636 * 120.15150 * 179.78951 * 7 5 4 9 9 N 1.29086 * 125.86628 * 0.02562 * 8 7 5 10 10 O 1.41388 * 112.87502 * 179.64149 * 9 8 7 11 11 C 1.44205 * 107.59258 * 17.49828 * 10 9 8 12 12 H 1.08999 * 110.98068 * 92.74996 * 11 10 9 13 13 C 1.50704 * 110.96998 * 216.48023 * 11 10 9 14 14 O 1.21283 * 120.00221 * 3.54651 * 13 11 10 15 15 N 1.34783 * 119.99996 * 183.54419 * 13 11 10 16 16 C 1.46494 * 120.00081 * 179.97438 * 15 13 11 17 17 H 1.09002 * 109.47264 * 325.00148 * 16 15 13 18 18 C 1.52999 * 109.47311 * 85.00031 * 16 15 13 19 19 C 1.50697 * 109.47183 * 205.00193 * 16 15 13 20 20 H 1.07996 * 120.00150 * 359.97438 * 19 16 15 21 21 C 1.37881 * 119.99800 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00258 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99693 * 179.97438 * 21 19 16 24 24 H 1.48495 * 109.47273 * 90.00094 * 23 21 19 25 25 H 1.48507 * 109.46829 * 209.99709 * 23 21 19 26 26 H 1.48494 * 109.47235 * 329.99433 * 23 21 19 27 27 C 1.51693 * 125.86873 * 179.69178 * 8 7 5 28 28 C 1.37937 * 119.91996 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46668 * 89.99999 * 1 2 3 30 30 H 1.08996 * 109.47346 * 209.99879 * 1 2 3 31 31 H 1.08999 * 109.46710 * 330.00338 * 1 2 3 32 32 H 1.08002 * 119.84639 * 359.97320 * 3 2 1 33 33 H 1.08000 * 119.92225 * 179.74909 * 4 3 2 34 34 H 1.09007 * 109.46851 * 270.22833 * 6 5 4 35 35 H 1.08996 * 109.47532 * 30.22922 * 6 5 4 36 36 H 1.09002 * 109.47717 * 150.23083 * 6 5 4 37 37 H 0.96992 * 119.99818 * 0.02562 * 15 13 11 38 38 H 1.09002 * 109.47522 * 180.02562 * 18 16 15 39 39 H 1.08999 * 109.47169 * 300.00198 * 18 16 15 40 40 H 1.09000 * 109.47373 * 59.99847 * 18 16 15 41 41 H 0.97005 * 120.00130 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.79245 * 282.91350 * 27 8 7 43 43 H 1.09003 * 110.78899 * 46.37775 * 27 8 7 44 44 H 1.07997 * 120.07816 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 -0.0054 5 6 4.2814 0.0197 -0.0001 6 6 5.7884 0.0315 0.0000 7 6 3.5914 -1.1937 0.0004 8 6 4.3345 -2.4694 0.0014 9 7 5.6191 -2.5963 0.0024 10 8 6.0380 -3.9467 0.0113 11 6 4.9150 -4.7541 -0.3968 12 1 4.9303 -4.9287 -1.4726 13 6 4.8857 -6.0581 0.3580 14 8 5.7038 -6.2745 1.2269 15 7 3.9502 -6.9840 0.0676 16 6 3.9220 -8.2519 0.8010 17 1 4.9413 -8.5586 1.0358 18 6 3.1315 -8.0731 2.0987 19 6 3.2625 -9.3084 -0.0475 20 1 2.9001 -9.0601 -1.0341 21 6 3.1207 -10.5917 0.4363 22 7 3.5615 -10.8939 1.6380 23 14 2.3025 -11.9011 -0.6151 24 1 3.3301 -12.5901 -1.4362 25 1 1.6261 -12.8895 0.2629 26 1 1.3007 -11.2647 -1.5075 27 6 3.7198 -3.8562 0.0087 28 6 2.1951 -1.1955 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6537 2.1324 -0.0004 33 1 4.1134 2.1477 -0.0095 34 1 6.1518 0.0339 -1.0277 35 1 6.1448 0.9245 0.5135 36 1 6.1587 -0.8554 0.5142 37 1 3.2962 -6.8111 -0.6274 38 1 3.1109 -9.0163 2.6446 39 1 3.6086 -7.3089 2.7123 40 1 2.1123 -7.7664 1.8639 41 1 3.4614 -11.7967 1.9785 42 1 3.3591 -4.1143 1.0043 43 1 2.9171 -3.9273 -0.7253 44 1 1.6550 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900433412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:59 Heat of formation + Delta-G solvation = -16.665186 kcal Electronic energy + Delta-G solvation = -25684.088984 eV Core-core repulsion = 21988.332175 eV Total energy + Delta-G solvation = -3695.756809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.84338 -40.56808 -39.68972 -36.79700 -35.44294 -34.49369 -34.05132 -32.44580 -31.34811 -30.58099 -29.97144 -27.36363 -25.94432 -25.75467 -24.47483 -23.02536 -22.21487 -21.34224 -20.45857 -19.26678 -18.13964 -17.72939 -17.16464 -17.03892 -16.60861 -16.40247 -16.08532 -15.85160 -15.45401 -15.10336 -14.94539 -14.48021 -14.34145 -14.24918 -14.09084 -13.84990 -13.74908 -13.65641 -13.40989 -13.09335 -12.96690 -12.94168 -12.83201 -12.77122 -12.46185 -12.28305 -12.26129 -12.13162 -12.01459 -11.40358 -11.25657 -11.14175 -10.68605 -10.58667 -9.88967 -9.69407 -9.35991 -8.18767 -6.36969 -0.33974 0.39685 1.16674 1.42158 1.46489 1.47505 1.57505 1.66775 2.34334 2.51971 2.76886 2.88559 3.12119 3.29844 3.32690 3.71084 3.85319 3.89295 3.96683 4.11296 4.24119 4.30175 4.43715 4.52080 4.54801 4.71953 4.73948 4.77525 4.82844 4.88297 4.91094 4.94049 5.05276 5.05658 5.27527 5.36837 5.38063 5.43301 5.54030 5.60058 5.63785 5.64499 5.85049 6.00156 6.05890 6.18237 6.69317 6.81167 7.27079 7.42340 8.87767 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002761 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.955132 B =10138.252631 C =11122.846595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.063 4.063 6 C -0.132 4.132 7 C -0.067 4.067 8 C 0.143 3.857 9 N -0.304 5.304 10 O -0.217 6.217 11 C 0.031 3.969 12 H 0.139 0.861 13 C 0.505 3.495 14 O -0.587 6.587 15 N -0.689 5.689 16 C 0.271 3.729 17 H -0.005 1.005 18 C -0.134 4.134 19 C -0.546 4.546 20 H 0.079 0.921 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.974 3.026 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.255 1.255 27 C -0.129 4.129 28 C -0.083 4.083 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.067 0.933 39 H 0.008 0.992 40 H 0.048 0.952 41 H 0.266 0.734 42 H 0.105 0.895 43 H 0.157 0.843 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 25.984 -7.440 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.189 4.189 7 C -0.069 4.069 8 C -0.045 4.045 9 N -0.049 5.049 10 O -0.232 6.232 11 C -0.031 4.031 12 H 0.156 0.844 13 C 0.289 3.711 14 O -0.467 6.467 15 N -0.340 5.340 16 C 0.167 3.833 17 H 0.013 0.987 18 C -0.193 4.193 19 C -0.584 4.584 20 H 0.097 0.903 21 C -0.187 4.187 22 N -0.557 5.557 23 Si 0.799 3.201 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.179 1.179 27 C -0.168 4.168 28 C -0.103 4.103 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.175 0.825 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.031 25.990 -6.637 28.000 hybrid contribution -0.573 -1.671 -0.297 1.791 sum -8.604 24.319 -6.934 26.712 Atomic orbital electron populations 1.20852 0.88807 1.03925 1.03423 1.20155 0.97733 0.92349 0.99810 1.21603 0.93925 0.98845 0.96618 1.21252 0.94691 0.97485 1.00919 1.20290 0.96733 0.92540 0.96982 1.21186 0.90749 1.03909 1.03024 1.17842 0.93190 0.87724 1.08125 1.24656 0.91685 0.95680 0.92447 1.78603 1.14469 0.95616 1.16195 1.91357 1.31820 1.11745 1.88241 1.23667 0.88014 0.90398 1.00984 0.84400 1.20630 0.81317 0.85717 0.83422 1.90688 1.41223 1.79966 1.34862 1.46130 1.31606 1.16939 1.39287 1.18410 0.94813 0.79907 0.90123 0.98717 1.21901 0.98665 1.00302 0.98403 1.21530 1.39974 0.94591 1.02317 0.90281 1.25834 0.95800 1.00787 0.96249 1.70062 1.46696 1.20794 1.18162 0.85307 0.78506 0.78071 0.78225 1.20625 1.21072 1.17891 1.23031 0.99544 0.87408 1.06865 1.21366 0.91308 0.99892 0.97765 0.89993 0.90936 0.90159 0.82865 0.83379 0.90808 0.89974 0.90698 0.75320 0.91436 0.97248 0.93262 0.92523 0.87697 0.82537 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 71.24 0.71 -0.11 16 2 C -0.10 -1.23 5.87 -19.90 -0.12 -1.35 16 3 C -0.09 -1.03 9.69 22.33 0.22 -0.81 16 4 C -0.13 -1.74 9.69 22.23 0.22 -1.53 16 5 C -0.06 -1.22 5.91 -19.60 -0.12 -1.34 16 6 C -0.13 -2.68 9.18 71.24 0.65 -2.03 16 7 C -0.07 -1.38 5.87 -20.13 -0.12 -1.50 16 8 C 0.14 3.61 7.05 45.76 0.32 3.93 16 9 N -0.30 -9.67 8.97 -42.23 -0.38 -10.05 16 10 O -0.22 -8.36 11.82 -20.30 -0.24 -8.60 16 11 C 0.03 0.98 4.25 30.50 0.13 1.11 16 12 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 13 C 0.50 21.00 7.09 87.66 0.62 21.62 16 14 O -0.59 -31.45 16.25 14.97 0.24 -31.20 16 15 N -0.69 -27.66 5.07 -446.10 -2.26 -29.93 16 16 C 0.27 13.88 2.56 44.24 0.11 14.00 16 17 H -0.01 -0.32 7.58 -2.39 -0.02 -0.33 16 18 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 19 C -0.55 -28.12 8.73 25.60 0.22 -27.90 16 20 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 21 C 0.01 0.71 5.30 84.66 0.45 1.16 16 22 N -0.92 -52.45 11.32 21.45 0.24 -52.20 16 23 Si 0.97 41.08 29.54 68.60 2.03 43.10 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 27 C -0.13 -2.97 5.81 30.81 0.18 -2.79 16 28 C -0.08 -1.28 9.26 22.54 0.21 -1.07 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 32 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 33 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.30 8.09 -2.39 -0.02 1.29 16 36 H 0.07 1.98 5.18 -2.39 -0.01 1.96 16 37 H 0.41 12.89 8.54 -92.71 -0.79 12.10 16 38 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 41 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 42 H 0.10 2.59 7.91 -2.39 -0.02 2.57 16 43 H 0.16 2.12 7.95 -2.39 -0.02 2.10 16 44 H 0.15 1.68 7.37 -2.91 -0.02 1.66 16 Total: -1.00 -76.09 367.55 4.22 -71.86 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.23 Total: 21.65 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.36 Total: -4.63 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -2.40 Total: -92.17 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: 0.00 Total: -39.80 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -76.09 4.22 -71.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.198 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds