Wall clock time and date at job start Tue Mar 31 2020 12:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38374 * 119.92431 * 2 1 4 4 C 1.38337 * 120.30106 * 180.02562 * 3 2 1 5 5 C 1.37972 * 120.14755 * 359.78942 * 4 3 2 6 6 C 1.50700 * 120.07527 * 180.23102 * 5 4 3 7 7 C 1.39595 * 119.84881 * 0.46830 * 5 4 3 8 8 C 1.47649 * 120.14799 * 179.78442 * 7 5 4 9 9 N 1.29085 * 125.86442 * 359.75416 * 8 7 5 10 10 O 1.41392 * 112.86964 * 180.33887 * 9 8 7 11 11 C 1.44202 * 107.59482 * 342.49663 * 10 9 8 12 12 H 1.09000 * 110.97642 * 267.25419 * 11 10 9 13 13 C 1.50702 * 110.97021 * 143.51969 * 11 10 9 14 14 O 1.21283 * 120.00262 * 356.45858 * 13 11 10 15 15 N 1.34777 * 119.99928 * 176.17764 * 13 11 10 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 11 17 17 H 1.09007 * 109.47463 * 325.00619 * 16 15 13 18 18 C 1.53000 * 109.47070 * 85.00207 * 16 15 13 19 19 C 1.50697 * 109.47763 * 205.00186 * 16 15 13 20 20 H 1.08011 * 119.99571 * 0.02562 * 19 16 15 21 21 C 1.37871 * 120.00501 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99867 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00050 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47374 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46939 * 120.00489 * 23 21 19 26 26 H 1.48503 * 109.47493 * 240.00132 * 23 21 19 27 27 C 1.51690 * 125.86526 * 179.76879 * 8 7 5 28 28 C 1.37933 * 119.92194 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46675 * 269.97144 * 1 2 3 30 30 H 1.08995 * 109.47316 * 29.97148 * 1 2 3 31 31 H 1.08998 * 109.47538 * 149.97249 * 1 2 3 32 32 H 1.07994 * 119.85158 * 0.03285 * 3 2 1 33 33 H 1.07996 * 119.92808 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47381 * 270.23473 * 6 5 4 35 35 H 1.09004 * 109.47328 * 30.24136 * 6 5 4 36 36 H 1.09000 * 109.47048 * 150.23796 * 6 5 4 37 37 H 0.97000 * 120.00317 * 0.28382 * 15 13 11 38 38 H 1.09005 * 109.47473 * 300.00173 * 18 16 15 39 39 H 1.08998 * 109.46925 * 59.99877 * 18 16 15 40 40 H 1.08998 * 109.47598 * 180.02562 * 18 16 15 41 41 H 0.96999 * 119.99893 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.79010 * 77.10894 * 27 8 7 43 43 H 1.08999 * 110.79227 * 313.64440 * 27 8 7 44 44 H 1.07994 * 120.08145 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2084 -0.0005 5 6 4.2814 0.0199 0.0033 6 6 5.7883 0.0317 0.0080 7 6 3.5913 -1.1936 -0.0021 8 6 4.3346 -2.4693 -0.0029 9 7 5.6192 -2.5962 -0.0033 10 8 6.0381 -3.9466 -0.0117 11 6 4.9150 -4.7538 0.3964 12 1 4.9301 -4.9280 1.4722 13 6 4.8859 -6.0581 -0.3580 14 8 5.7043 -6.2748 -1.2265 15 7 3.9540 -6.9862 -0.0637 16 6 3.9294 -8.2566 -0.7929 17 1 4.2253 -8.0871 -1.8283 18 6 4.9029 -9.2390 -0.1387 19 6 2.5363 -8.8302 -0.7561 20 1 1.7479 -8.3011 -0.2413 21 6 2.2680 -10.0299 -1.3803 22 7 3.2279 -10.6739 -2.0076 23 14 0.5414 -10.7412 -1.3340 24 1 -0.3489 -9.8305 -0.5702 25 1 0.0286 -10.8865 -2.7201 26 1 0.5716 -12.0718 -0.6754 27 6 3.7199 -3.8561 -0.0036 28 6 2.1950 -1.1955 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6537 2.1324 0.0005 33 1 4.1133 2.1478 -0.0001 34 1 6.1549 0.0373 -1.0186 35 1 6.1431 0.9231 0.5254 36 1 6.1571 -0.8568 0.5205 37 1 3.2993 -6.8130 0.6308 38 1 5.9106 -8.8242 -0.1653 39 1 4.6071 -9.4085 0.8966 40 1 4.8850 -10.1841 -0.6814 41 1 3.0392 -11.5181 -2.4465 42 1 3.3551 -4.1171 -0.9970 43 1 2.9202 -3.9252 0.7339 44 1 1.6551 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900433413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:06 Heat of formation + Delta-G solvation = 2.662697 kcal Electronic energy + Delta-G solvation = -25681.257601 eV Core-core repulsion = 21986.338912 eV Total energy + Delta-G solvation = -3694.918689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.70485 -39.57713 -38.27196 -34.93977 -34.57999 -33.22931 -32.55609 -31.09236 -30.51189 -29.52258 -28.61495 -25.33461 -25.26929 -24.47502 -23.71771 -21.53805 -21.17241 -19.68771 -19.45993 -17.68823 -16.84987 -16.41342 -15.97837 -15.80799 -15.39525 -15.16229 -14.90103 -14.61828 -14.32867 -13.94836 -13.67700 -13.46614 -13.35942 -13.10854 -12.91501 -12.69822 -12.64213 -12.46012 -12.27569 -11.95455 -11.83255 -11.64500 -11.59776 -11.37534 -11.15100 -11.00993 -10.79374 -10.43950 -10.35692 -10.29373 -10.11320 -9.14085 -9.09785 -8.90765 -8.62557 -8.59089 -8.04028 -6.17738 -4.27824 0.47036 1.04626 2.04188 2.77480 3.15303 3.19917 3.27987 3.30035 3.45520 3.73864 3.98179 4.28401 4.36343 4.48746 4.52045 4.60078 4.69518 4.87843 4.88670 4.98773 5.14591 5.20200 5.25239 5.30199 5.36198 5.41244 5.47572 5.54411 5.57761 5.68559 5.71135 5.75857 6.04947 6.15163 6.24433 6.35918 6.64422 6.77013 6.91102 7.08622 7.24278 7.34731 7.48421 7.62236 7.84271 8.08505 8.52082 8.69746 8.97046 9.39686 10.88304 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.003007 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.374961 B = 9309.487746 C =10891.049693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.048 4.048 6 C -0.133 4.133 7 C -0.041 4.041 8 C 0.125 3.875 9 N -0.279 5.279 10 O -0.168 6.168 11 C 0.025 3.975 12 H 0.107 0.893 13 C 0.506 3.494 14 O -0.528 6.528 15 N -0.702 5.702 16 C 0.265 3.735 17 H 0.050 0.950 18 C -0.149 4.149 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.137 4.137 28 C -0.082 4.082 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.389 0.611 38 H 0.016 0.984 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.265 0.735 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 22.859 7.251 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.141 4.141 5 C -0.050 4.050 6 C -0.190 4.190 7 C -0.042 4.042 8 C -0.064 4.064 9 N -0.020 5.020 10 O -0.186 6.186 11 C -0.037 4.037 12 H 0.125 0.875 13 C 0.288 3.712 14 O -0.404 6.404 15 N -0.351 5.351 16 C 0.164 3.836 17 H 0.068 0.932 18 C -0.207 4.207 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.176 4.176 28 C -0.102 4.102 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.222 0.778 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.121 22.846 6.433 23.939 hybrid contribution -1.994 -0.913 0.416 2.232 sum -5.115 21.934 6.849 23.540 Atomic orbital electron populations 1.20798 0.90635 1.03125 1.02551 1.19804 0.96388 0.92667 1.00814 1.21198 0.94141 0.97682 0.98667 1.20986 0.94048 0.97470 1.01585 1.20141 0.96817 0.91767 0.96271 1.21240 0.90165 1.04196 1.03370 1.17713 0.92333 0.88562 1.05576 1.24225 0.92239 0.94562 0.95343 1.78440 1.13020 0.97883 1.12688 1.91387 1.30091 1.09742 1.87363 1.23646 0.86784 0.92848 1.00448 0.87539 1.19816 0.82900 0.84307 0.84176 1.90720 1.38751 1.78928 1.32033 1.46479 1.30921 1.18251 1.39477 1.18810 0.95552 0.77129 0.92115 0.93239 1.22094 0.96163 1.02971 0.99500 1.21219 0.93929 1.06325 1.35880 0.91935 1.24896 0.97571 0.96517 0.94731 1.69913 1.31840 1.16062 1.34088 0.86378 0.83739 0.78981 0.77892 1.19717 1.20842 1.20832 1.22942 0.99858 0.88814 1.05993 1.21137 0.92180 0.98511 0.98346 0.91004 0.91421 0.91175 0.85684 0.85433 0.90595 0.91712 0.88242 0.77822 0.96527 0.95330 0.88995 0.92526 0.87051 0.87099 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.10 -0.79 5.87 -104.68 -0.61 -1.40 16 3 C -0.10 -0.75 9.69 -39.49 -0.38 -1.13 16 4 C -0.12 -1.04 9.69 -39.64 -0.38 -1.42 16 5 C -0.05 -0.50 5.91 -104.21 -0.62 -1.12 16 6 C -0.13 -1.38 9.18 36.01 0.33 -1.05 16 7 C -0.04 -0.46 5.87 -105.03 -0.62 -1.07 16 8 C 0.12 1.64 7.05 -79.42 -0.56 1.08 16 9 N -0.28 -4.36 8.97 35.30 0.32 -4.04 16 10 O -0.17 -3.11 11.82 -30.21 -0.36 -3.47 16 11 C 0.03 0.40 4.23 -26.97 -0.11 0.29 16 12 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 13 C 0.51 10.30 7.10 -10.98 -0.08 10.22 16 14 O -0.53 -13.37 16.25 -13.28 -0.22 -13.58 16 15 N -0.70 -14.12 5.07 -54.93 -0.28 -14.39 16 16 C 0.27 6.63 2.56 -69.08 -0.18 6.46 16 17 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 18 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 19 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 21 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 22 N -0.88 -24.54 11.32 55.43 0.63 -23.92 16 23 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.14 -1.72 5.81 -26.48 -0.15 -1.87 16 28 C -0.08 -0.76 9.26 -39.17 -0.36 -1.13 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.10 1.22 5.19 -51.93 -0.27 0.95 16 37 H 0.39 6.48 8.54 -40.82 -0.35 6.13 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.11 1.49 7.90 -51.93 -0.41 1.08 16 43 H 0.11 1.00 7.95 -51.93 -0.41 0.58 16 44 H 0.13 1.03 7.37 -52.49 -0.39 0.64 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -32.74 367.56 -9.11 -41.85 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.30 Total: 5.10 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.42 Total: -8.21 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.67 Total: -42.35 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.57 Total: -17.05 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.74 -9.11 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.509 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds