Wall clock time and date at job start Tue Mar 31 2020 12:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38374 * 119.92431 * 2 1 4 4 C 1.38337 * 120.30106 * 180.02562 * 3 2 1 5 5 C 1.37972 * 120.14755 * 359.78942 * 4 3 2 6 6 C 1.50700 * 120.07527 * 180.23102 * 5 4 3 7 7 C 1.39595 * 119.84881 * 0.46830 * 5 4 3 8 8 C 1.47649 * 120.14799 * 179.78442 * 7 5 4 9 9 N 1.29085 * 125.86442 * 359.75416 * 8 7 5 10 10 O 1.41392 * 112.86964 * 180.33887 * 9 8 7 11 11 C 1.44202 * 107.59482 * 342.49663 * 10 9 8 12 12 H 1.09000 * 110.97642 * 267.25419 * 11 10 9 13 13 C 1.50702 * 110.97021 * 143.51969 * 11 10 9 14 14 O 1.21283 * 120.00262 * 356.45858 * 13 11 10 15 15 N 1.34777 * 119.99928 * 176.17764 * 13 11 10 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 11 17 17 H 1.09007 * 109.47463 * 325.00619 * 16 15 13 18 18 C 1.53000 * 109.47070 * 85.00207 * 16 15 13 19 19 C 1.50697 * 109.47763 * 205.00186 * 16 15 13 20 20 H 1.08011 * 119.99571 * 0.02562 * 19 16 15 21 21 C 1.37871 * 120.00501 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99867 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00050 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47374 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46939 * 120.00489 * 23 21 19 26 26 H 1.48503 * 109.47493 * 240.00132 * 23 21 19 27 27 C 1.51690 * 125.86526 * 179.76879 * 8 7 5 28 28 C 1.37933 * 119.92194 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46675 * 269.97144 * 1 2 3 30 30 H 1.08995 * 109.47316 * 29.97148 * 1 2 3 31 31 H 1.08998 * 109.47538 * 149.97249 * 1 2 3 32 32 H 1.07994 * 119.85158 * 0.03285 * 3 2 1 33 33 H 1.07996 * 119.92808 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47381 * 270.23473 * 6 5 4 35 35 H 1.09004 * 109.47328 * 30.24136 * 6 5 4 36 36 H 1.09000 * 109.47048 * 150.23796 * 6 5 4 37 37 H 0.97000 * 120.00317 * 0.28382 * 15 13 11 38 38 H 1.09005 * 109.47473 * 300.00173 * 18 16 15 39 39 H 1.08998 * 109.46925 * 59.99877 * 18 16 15 40 40 H 1.08998 * 109.47598 * 180.02562 * 18 16 15 41 41 H 0.96999 * 119.99893 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.79010 * 77.10894 * 27 8 7 43 43 H 1.08999 * 110.79227 * 313.64440 * 27 8 7 44 44 H 1.07994 * 120.08145 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2084 -0.0005 5 6 4.2814 0.0199 0.0033 6 6 5.7883 0.0317 0.0080 7 6 3.5913 -1.1936 -0.0021 8 6 4.3346 -2.4693 -0.0029 9 7 5.6192 -2.5962 -0.0033 10 8 6.0381 -3.9466 -0.0117 11 6 4.9150 -4.7538 0.3964 12 1 4.9301 -4.9280 1.4722 13 6 4.8859 -6.0581 -0.3580 14 8 5.7043 -6.2748 -1.2265 15 7 3.9540 -6.9862 -0.0637 16 6 3.9294 -8.2566 -0.7929 17 1 4.2253 -8.0871 -1.8283 18 6 4.9029 -9.2390 -0.1387 19 6 2.5363 -8.8302 -0.7561 20 1 1.7479 -8.3011 -0.2413 21 6 2.2680 -10.0299 -1.3803 22 7 3.2279 -10.6739 -2.0076 23 14 0.5414 -10.7412 -1.3340 24 1 -0.3489 -9.8305 -0.5702 25 1 0.0286 -10.8865 -2.7201 26 1 0.5716 -12.0718 -0.6754 27 6 3.7199 -3.8561 -0.0036 28 6 2.1950 -1.1955 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6537 2.1324 0.0005 33 1 4.1133 2.1478 -0.0001 34 1 6.1549 0.0373 -1.0186 35 1 6.1431 0.9231 0.5254 36 1 6.1571 -0.8568 0.5205 37 1 3.2993 -6.8130 0.6308 38 1 5.9106 -8.8242 -0.1653 39 1 4.6071 -9.4085 0.8966 40 1 4.8850 -10.1841 -0.6814 41 1 3.0392 -11.5181 -2.4465 42 1 3.3551 -4.1171 -0.9970 43 1 2.9202 -3.9252 0.7339 44 1 1.6551 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900433413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:04 Heat of formation + Delta-G solvation = -16.765810 kcal Electronic energy + Delta-G solvation = -25682.100085 eV Core-core repulsion = 21986.338912 eV Total energy + Delta-G solvation = -3695.761173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84728 -40.57008 -39.69389 -36.79541 -35.44485 -34.49127 -34.05425 -32.46058 -31.35284 -30.56976 -29.97213 -27.37043 -25.95077 -25.76821 -24.47725 -22.99902 -22.20926 -21.37270 -20.46867 -19.28475 -18.03760 -17.72766 -17.17239 -17.13170 -16.63695 -16.41595 -16.02579 -15.80752 -15.56513 -15.02869 -14.94485 -14.51154 -14.35596 -14.15298 -14.10331 -13.94395 -13.74187 -13.64774 -13.37207 -13.07486 -13.02064 -12.92837 -12.84458 -12.73773 -12.46769 -12.30150 -12.27662 -12.11238 -12.01282 -11.39020 -11.30027 -11.12326 -10.68702 -10.57606 -9.89126 -9.69309 -9.36632 -8.18285 -6.36492 -0.34293 0.39361 1.16102 1.43472 1.46378 1.47036 1.58709 1.66815 2.35292 2.51349 2.76766 2.88674 3.12875 3.30283 3.32618 3.70940 3.84973 3.88610 3.96506 4.11088 4.23945 4.30102 4.43994 4.51562 4.54766 4.71234 4.73803 4.76700 4.82990 4.88404 4.90769 4.94011 5.05151 5.05576 5.27157 5.36465 5.37496 5.43005 5.54555 5.59641 5.63588 5.64209 5.84365 5.99901 6.05514 6.17990 6.69922 6.81260 7.27379 7.42588 8.88614 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.003007 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.374961 B = 9309.487746 C =10891.049693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.063 4.063 6 C -0.132 4.132 7 C -0.068 4.068 8 C 0.144 3.856 9 N -0.304 5.304 10 O -0.216 6.216 11 C 0.032 3.968 12 H 0.141 0.859 13 C 0.505 3.495 14 O -0.587 6.587 15 N -0.689 5.689 16 C 0.271 3.729 17 H -0.003 1.003 18 C -0.137 4.137 19 C -0.544 4.544 20 H 0.081 0.919 21 C 0.012 3.988 22 N -0.920 5.920 23 Si 0.975 3.025 24 H -0.254 1.254 25 H -0.286 1.286 26 H -0.281 1.281 27 C -0.131 4.131 28 C -0.084 4.084 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.411 0.589 38 H 0.008 0.992 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.103 0.897 43 H 0.157 0.843 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 25.183 9.024 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.188 4.188 7 C -0.069 4.069 8 C -0.044 4.044 9 N -0.049 5.049 10 O -0.231 6.231 11 C -0.030 4.030 12 H 0.158 0.842 13 C 0.289 3.711 14 O -0.467 6.467 15 N -0.340 5.340 16 C 0.168 3.832 17 H 0.015 0.985 18 C -0.196 4.196 19 C -0.582 4.582 20 H 0.099 0.901 21 C -0.188 4.188 22 N -0.558 5.558 23 Si 0.800 3.200 24 H -0.177 1.177 25 H -0.212 1.212 26 H -0.207 1.207 27 C -0.170 4.170 28 C -0.104 4.104 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.247 0.753 38 H 0.027 0.973 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.174 0.826 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.672 25.177 8.252 27.322 hybrid contribution -0.947 -1.468 -0.168 1.755 sum -7.618 23.709 8.084 26.182 Atomic orbital electron populations 1.20852 0.88835 1.03901 1.03435 1.20150 0.97722 0.92356 0.99810 1.21601 0.93942 0.98822 0.96622 1.21258 0.94677 0.97499 1.00888 1.20291 0.96750 0.92510 0.96981 1.21182 0.90707 1.04142 1.02769 1.17845 0.93169 0.87756 1.08112 1.24652 0.91681 0.95655 0.92449 1.78586 1.14419 0.95654 1.16220 1.91359 1.31801 1.11677 1.88228 1.23635 0.87951 0.90402 1.01045 0.84217 1.20623 0.81449 0.85631 0.83369 1.90689 1.40944 1.80359 1.34740 1.46131 1.31537 1.16856 1.39438 1.18414 0.95666 0.79075 0.90072 0.98486 1.21935 0.95843 1.01779 1.00026 1.21558 0.94319 1.06488 1.35804 0.90051 1.25852 1.01675 0.97022 0.94235 1.70074 1.34217 1.16492 1.35038 0.85244 0.78774 0.78274 0.77715 1.17745 1.21190 1.20677 1.23008 0.99621 0.87512 1.06846 1.21363 0.91354 0.99880 0.97795 0.89960 0.90138 0.91013 0.82841 0.83321 0.91524 0.89654 0.90312 0.75312 0.97283 0.93552 0.91344 0.92566 0.87915 0.82552 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.24 0.71 -0.18 16 2 C -0.10 -1.28 5.87 -19.90 -0.12 -1.40 16 3 C -0.09 -1.06 9.69 22.33 0.22 -0.84 16 4 C -0.13 -1.77 9.69 22.23 0.22 -1.56 16 5 C -0.06 -1.24 5.91 -19.60 -0.12 -1.36 16 6 C -0.13 -2.69 9.18 71.24 0.65 -2.03 16 7 C -0.07 -1.41 5.87 -20.13 -0.12 -1.53 16 8 C 0.14 3.67 7.05 45.77 0.32 3.99 16 9 N -0.30 -9.71 8.97 -42.23 -0.38 -10.08 16 10 O -0.22 -8.30 11.82 -20.31 -0.24 -8.54 16 11 C 0.03 0.99 4.23 30.44 0.13 1.12 16 12 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 13 C 0.50 21.00 7.10 87.66 0.62 21.62 16 14 O -0.59 -31.44 16.25 14.97 0.24 -31.20 16 15 N -0.69 -27.65 5.07 -446.09 -2.26 -29.91 16 16 C 0.27 13.89 2.56 44.24 0.11 14.00 16 17 H 0.00 -0.17 7.58 -2.38 -0.02 -0.19 16 18 C -0.14 -6.98 9.26 71.98 0.67 -6.32 16 19 C -0.54 -27.72 8.73 25.60 0.22 -27.50 16 20 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 21 C 0.01 0.64 5.30 84.65 0.45 1.08 16 22 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 23 Si 0.98 40.68 29.54 68.60 2.03 42.71 16 24 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 25 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 27 C -0.13 -3.08 5.81 30.76 0.18 -2.90 16 28 C -0.08 -1.34 9.26 22.53 0.21 -1.13 16 29 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 31 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.30 8.09 -2.39 -0.02 1.29 16 36 H 0.08 1.99 5.19 -2.39 -0.01 1.97 16 37 H 0.41 12.87 8.54 -92.71 -0.79 12.08 16 38 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 41 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.10 2.67 7.90 -2.39 -0.02 2.65 16 43 H 0.16 2.21 7.95 -2.39 -0.02 2.19 16 44 H 0.15 1.80 7.37 -2.91 -0.02 1.77 16 Total: -1.00 -75.76 367.56 4.22 -71.54 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.23 Total: 22.58 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 4.36 Total: -4.93 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -2.40 Total: -92.16 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: 0.00 Total: -39.74 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -75.76 4.22 -71.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.770 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds