Wall clock time and date at job start Tue Mar 31 2020 12:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37981 * 120.07454 * 2 1 4 4 C 1.38337 * 120.14451 * 180.27521 * 3 2 1 5 5 C 1.38381 * 120.30271 * 359.69174 * 4 3 2 6 6 C 1.37929 * 120.14766 * 0.02892 * 5 4 3 7 7 C 1.39587 * 120.07485 * 179.71415 * 2 1 3 8 8 C 1.47639 * 120.15098 * 0.02614 * 7 2 1 9 9 N 1.29086 * 125.86574 * 359.70027 * 8 7 2 10 10 O 1.41389 * 112.87630 * 180.29705 * 9 8 7 11 11 C 1.44207 * 107.59104 * 342.50540 * 10 9 8 12 12 H 1.09006 * 110.96970 * 267.24709 * 11 10 9 13 13 C 1.50701 * 110.97235 * 143.51970 * 11 10 9 14 14 O 1.21279 * 120.00251 * 356.44599 * 13 11 10 15 15 N 1.34777 * 120.00115 * 176.44998 * 13 11 10 16 16 C 1.46500 * 120.00376 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46886 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99923 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47093 * 90.00088 * 23 21 19 25 25 H 1.48495 * 109.46891 * 210.00496 * 23 21 19 26 26 H 1.48504 * 109.47189 * 330.00185 * 23 21 19 27 27 C 1.51689 * 125.86908 * 179.66981 * 8 7 2 28 28 H 1.09000 * 109.47151 * 270.28063 * 1 2 3 29 29 H 1.08995 * 109.46821 * 30.28220 * 1 2 3 30 30 H 1.08998 * 109.46640 * 150.27984 * 1 2 3 31 31 H 1.07995 * 119.92540 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.84703 * 179.71589 * 4 3 2 33 33 H 1.07999 * 119.92064 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.07031 * 179.97438 * 6 5 4 35 35 H 0.97003 * 119.99640 * 359.97438 * 15 13 11 36 36 H 1.09001 * 109.46596 * 59.99898 * 16 15 13 37 37 H 1.09002 * 109.47129 * 300.00253 * 16 15 13 38 38 H 1.09001 * 109.46652 * 60.00269 * 17 16 15 39 39 H 1.08992 * 109.47514 * 300.00358 * 17 16 15 40 40 H 1.09002 * 109.47398 * 300.00496 * 18 17 16 41 41 H 1.09001 * 109.47194 * 60.00677 * 18 17 16 42 42 H 0.97000 * 119.99684 * 180.02562 * 22 21 19 43 43 H 1.09008 * 110.79324 * 77.14880 * 27 8 7 44 44 H 1.09000 * 110.79349 * 313.68233 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1957 -0.0057 5 6 4.2816 0.0019 -0.0051 6 6 3.6028 -1.1989 0.0007 7 6 2.2066 -1.2079 0.0060 8 6 1.4734 -2.4894 0.0118 9 7 0.1899 -2.6264 0.0175 10 8 -0.2184 -3.9800 0.0288 11 6 0.9095 -4.7789 -0.3826 12 1 0.8915 -4.9543 -1.4583 13 6 0.9517 -6.0821 0.3729 14 8 0.1385 -6.3042 1.2448 15 7 1.8932 -7.0008 0.0798 16 6 1.9346 -8.2675 0.8147 17 6 3.0887 -9.1241 0.2900 18 6 3.1323 -10.4466 1.0580 19 6 4.2695 -11.2901 0.5416 20 1 4.8984 -10.9196 -0.2543 21 6 4.5069 -12.5346 1.0853 22 7 5.4996 -13.2704 0.6351 23 14 3.4195 -13.1751 2.4626 24 1 2.2740 -13.9212 1.8826 25 1 4.2086 -14.0803 3.3360 26 1 2.9113 -12.0328 3.2640 27 6 2.0990 -3.8713 0.0116 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6585 2.1293 -0.0004 32 1 4.1182 2.1331 -0.0104 33 1 5.3615 0.0104 -0.0100 34 1 4.1502 -2.1299 0.0008 35 1 2.5434 -6.8233 -0.6178 36 1 0.9941 -8.8001 0.6738 37 1 2.0834 -8.0673 1.8758 38 1 4.0294 -8.5916 0.4305 39 1 2.9396 -9.3242 -0.7709 40 1 3.2817 -10.2461 2.1189 41 1 2.1917 -10.9793 0.9178 42 1 5.6664 -14.1462 1.0174 43 1 2.4697 -4.1285 1.0039 44 1 2.8963 -3.9350 -0.7289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906570313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:17 Heat of formation + Delta-G solvation = 1.813255 kcal Electronic energy + Delta-G solvation = -24805.341665 eV Core-core repulsion = 21110.386141 eV Total energy + Delta-G solvation = -3694.955524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -41.06601 -39.78228 -38.79417 -35.65909 -34.27063 -33.49746 -33.05621 -31.88882 -30.85835 -30.68866 -27.60819 -27.23840 -24.86282 -23.85641 -22.74181 -21.92112 -20.92819 -20.38320 -19.95005 -17.78606 -17.53837 -16.79966 -16.46457 -16.29384 -15.86819 -15.56059 -15.22146 -14.98863 -14.59308 -14.29855 -14.06781 -13.90747 -13.75098 -13.52999 -13.27860 -13.05372 -12.75096 -12.64699 -12.46332 -12.33224 -12.00707 -11.96113 -11.88996 -11.56783 -11.16125 -10.94267 -10.72914 -10.56692 -10.20945 -10.02379 -9.82282 -9.61535 -9.27947 -9.25053 -9.04241 -8.92977 -8.59502 -6.10335 -4.09420 0.23948 0.88690 1.78531 2.27473 2.50621 3.17455 3.28655 3.30847 3.36493 3.40282 3.55972 3.99517 4.07606 4.37287 4.38405 4.40876 4.42540 4.55293 4.64277 4.82665 4.87771 5.01504 5.13311 5.13818 5.23704 5.29852 5.38766 5.44437 5.46262 5.49998 5.56017 5.87367 5.91907 5.94979 5.99583 6.14349 6.19314 6.35722 6.43975 6.56807 6.70534 6.93719 7.16676 7.30079 7.41313 7.71400 8.09297 8.45475 8.93005 9.51806 11.02748 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.002107 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.453434 B =13285.331905 C =14188.678052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 C -0.127 4.127 4 C -0.095 4.095 5 C -0.130 4.130 6 C -0.080 4.080 7 C -0.050 4.050 8 C 0.130 3.870 9 N -0.277 5.277 10 O -0.169 6.169 11 C 0.026 3.974 12 H 0.114 0.886 13 C 0.514 3.486 14 O -0.517 6.517 15 N -0.719 5.719 16 C 0.114 3.886 17 C -0.113 4.113 18 C -0.012 4.012 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.111 0.889 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 30.986 -4.237 31.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.051 4.051 8 C -0.059 4.059 9 N -0.018 5.018 10 O -0.186 6.186 11 C -0.036 4.036 12 H 0.131 0.869 13 C 0.296 3.704 14 O -0.392 6.392 15 N -0.372 5.372 16 C -0.008 4.008 17 C -0.151 4.151 18 C -0.050 4.050 19 C -0.561 4.561 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.178 4.178 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.591 30.975 -3.497 31.669 hybrid contribution 0.720 -0.956 0.283 1.230 sum -4.871 30.018 -3.214 30.580 Atomic orbital electron populations 1.21258 0.90098 1.04312 1.03432 1.20173 0.96836 0.91814 0.95498 1.21044 0.94302 0.97463 1.01683 1.21369 0.94237 0.98467 0.97280 1.21095 1.00376 0.91985 1.01308 1.21259 0.92243 0.99086 0.97438 1.17722 0.92528 0.88397 1.06489 1.24236 0.92081 0.94551 0.95026 1.78538 1.13255 0.96876 1.13146 1.91414 1.29894 1.10064 1.87270 1.23546 0.87426 0.92113 1.00528 0.86897 1.19944 0.81940 0.84544 0.83941 1.90766 1.38773 1.78308 1.31307 1.46072 1.32640 1.18265 1.40175 1.21735 1.00763 0.82274 0.96062 1.21712 0.95581 0.97093 1.00685 1.19509 0.97543 0.92062 0.95836 1.21073 1.13545 1.00815 1.20666 0.90993 1.25031 0.95060 0.96697 0.96693 1.69907 1.29951 1.11498 1.42714 0.86779 0.80748 0.79155 0.82637 1.20213 1.21334 1.18912 1.22963 0.99755 0.89045 1.06038 0.90484 0.91511 0.88300 0.85352 0.85502 0.85165 0.85037 0.76503 0.91468 0.91523 0.92001 0.91984 0.96275 0.96682 0.92657 0.87066 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.18 36.01 0.33 -0.76 16 2 C -0.04 -0.34 5.91 -104.21 -0.62 -0.95 16 3 C -0.13 -0.81 9.69 -39.64 -0.38 -1.20 16 4 C -0.09 -0.52 10.04 -39.49 -0.40 -0.91 16 5 C -0.13 -0.72 10.03 -39.64 -0.40 -1.12 16 6 C -0.08 -0.52 9.61 -39.18 -0.38 -0.90 16 7 C -0.05 -0.42 5.87 -105.04 -0.62 -1.04 16 8 C 0.13 1.27 7.05 -79.42 -0.56 0.71 16 9 N -0.28 -3.42 8.97 35.30 0.32 -3.10 16 10 O -0.17 -2.46 11.83 -30.20 -0.36 -2.82 16 11 C 0.03 0.29 4.23 -26.97 -0.11 0.18 16 12 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 13 C 0.51 7.23 7.13 -10.98 -0.08 7.15 16 14 O -0.52 -9.82 16.59 -13.28 -0.22 -10.04 16 15 N -0.72 -8.94 5.56 -60.29 -0.33 -9.28 16 16 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 17 C -0.11 -1.98 5.27 -26.73 -0.14 -2.12 16 18 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 19 C -0.52 -14.41 9.66 -34.44 -0.33 -14.75 16 20 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 23 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 27 C -0.14 -1.14 5.81 -26.49 -0.15 -1.29 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.10 0.97 5.19 -51.93 -0.27 0.71 16 31 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 33 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.60 7.37 -52.49 -0.39 0.21 16 35 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.11 0.94 7.90 -51.92 -0.41 0.53 16 44 H 0.11 0.54 7.96 -51.93 -0.41 0.13 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -35.26 368.88 -9.41 -44.67 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.40 Total: -1.43 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -4.07 Total: -13.81 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.76 Total: -38.95 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.58 Total: -12.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.26 -9.41 -44.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.482 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds