Wall clock time and date at job start Tue Mar 31 2020 12:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37981 * 120.07454 * 2 1 4 4 C 1.38337 * 120.14451 * 180.27521 * 3 2 1 5 5 C 1.38381 * 120.30271 * 359.69174 * 4 3 2 6 6 C 1.37929 * 120.14766 * 0.02892 * 5 4 3 7 7 C 1.39587 * 120.07485 * 179.71415 * 2 1 3 8 8 C 1.47639 * 120.15098 * 0.02614 * 7 2 1 9 9 N 1.29086 * 125.86574 * 359.70027 * 8 7 2 10 10 O 1.41389 * 112.87630 * 180.29705 * 9 8 7 11 11 C 1.44207 * 107.59104 * 342.50540 * 10 9 8 12 12 H 1.09006 * 110.96970 * 267.24709 * 11 10 9 13 13 C 1.50701 * 110.97235 * 143.51970 * 11 10 9 14 14 O 1.21279 * 120.00251 * 356.44599 * 13 11 10 15 15 N 1.34777 * 120.00115 * 176.44998 * 13 11 10 16 16 C 1.46500 * 120.00376 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46886 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99923 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47093 * 90.00088 * 23 21 19 25 25 H 1.48495 * 109.46891 * 210.00496 * 23 21 19 26 26 H 1.48504 * 109.47189 * 330.00185 * 23 21 19 27 27 C 1.51689 * 125.86908 * 179.66981 * 8 7 2 28 28 H 1.09000 * 109.47151 * 270.28063 * 1 2 3 29 29 H 1.08995 * 109.46821 * 30.28220 * 1 2 3 30 30 H 1.08998 * 109.46640 * 150.27984 * 1 2 3 31 31 H 1.07995 * 119.92540 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.84703 * 179.71589 * 4 3 2 33 33 H 1.07999 * 119.92064 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.07031 * 179.97438 * 6 5 4 35 35 H 0.97003 * 119.99640 * 359.97438 * 15 13 11 36 36 H 1.09001 * 109.46596 * 59.99898 * 16 15 13 37 37 H 1.09002 * 109.47129 * 300.00253 * 16 15 13 38 38 H 1.09001 * 109.46652 * 60.00269 * 17 16 15 39 39 H 1.08992 * 109.47514 * 300.00358 * 17 16 15 40 40 H 1.09002 * 109.47398 * 300.00496 * 18 17 16 41 41 H 1.09001 * 109.47194 * 60.00677 * 18 17 16 42 42 H 0.97000 * 119.99684 * 180.02562 * 22 21 19 43 43 H 1.09008 * 110.79324 * 77.14880 * 27 8 7 44 44 H 1.09000 * 110.79349 * 313.68233 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1957 -0.0057 5 6 4.2816 0.0019 -0.0051 6 6 3.6028 -1.1989 0.0007 7 6 2.2066 -1.2079 0.0060 8 6 1.4734 -2.4894 0.0118 9 7 0.1899 -2.6264 0.0175 10 8 -0.2184 -3.9800 0.0288 11 6 0.9095 -4.7789 -0.3826 12 1 0.8915 -4.9543 -1.4583 13 6 0.9517 -6.0821 0.3729 14 8 0.1385 -6.3042 1.2448 15 7 1.8932 -7.0008 0.0798 16 6 1.9346 -8.2675 0.8147 17 6 3.0887 -9.1241 0.2900 18 6 3.1323 -10.4466 1.0580 19 6 4.2695 -11.2901 0.5416 20 1 4.8984 -10.9196 -0.2543 21 6 4.5069 -12.5346 1.0853 22 7 5.4996 -13.2704 0.6351 23 14 3.4195 -13.1751 2.4626 24 1 2.2740 -13.9212 1.8826 25 1 4.2086 -14.0803 3.3360 26 1 2.9113 -12.0328 3.2640 27 6 2.0990 -3.8713 0.0116 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6585 2.1293 -0.0004 32 1 4.1182 2.1331 -0.0104 33 1 5.3615 0.0104 -0.0100 34 1 4.1502 -2.1299 0.0008 35 1 2.5434 -6.8233 -0.6178 36 1 0.9941 -8.8001 0.6738 37 1 2.0834 -8.0673 1.8758 38 1 4.0294 -8.5916 0.4305 39 1 2.9396 -9.3242 -0.7709 40 1 3.2817 -10.2461 2.1189 41 1 2.1917 -10.9793 0.9178 42 1 5.6664 -14.1462 1.0174 43 1 2.4697 -4.1285 1.0039 44 1 2.8963 -3.9350 -0.7289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906570313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:16 Heat of formation + Delta-G solvation = -20.323938 kcal Electronic energy + Delta-G solvation = -24806.301605 eV Core-core repulsion = 21110.386141 eV Total energy + Delta-G solvation = -3695.915465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89999 -40.54421 -39.65082 -37.05798 -35.23641 -34.94812 -33.74371 -33.40835 -31.92410 -31.26516 -29.01601 -27.98792 -25.95001 -24.43590 -24.18841 -22.46553 -22.28334 -21.50216 -20.81915 -19.05734 -18.63987 -18.17742 -17.20764 -17.00857 -16.95825 -16.53923 -16.28099 -15.97952 -15.66366 -15.45856 -15.08252 -14.85699 -14.77879 -14.36836 -14.16116 -14.04147 -13.86402 -13.83018 -13.64396 -13.27752 -13.03269 -12.90842 -12.75085 -12.70664 -12.38648 -12.02197 -11.95859 -11.79954 -11.60142 -11.40016 -11.39193 -11.32366 -10.76046 -10.73790 -10.22705 -9.73346 -9.53107 -8.29207 -6.32559 -0.33575 0.43138 1.16436 1.28952 1.36547 1.38486 1.49429 1.51640 2.26482 2.35962 2.82642 2.84033 3.06748 3.27345 3.32899 3.57905 3.82723 3.89228 3.97682 4.07751 4.18965 4.19199 4.31199 4.42433 4.45217 4.48919 4.53807 4.60687 4.75157 4.83839 4.86992 4.87449 4.87569 5.04429 5.06633 5.28255 5.37114 5.43623 5.48687 5.55954 5.56094 5.60327 5.65310 5.99340 6.16825 6.27641 6.41823 6.75726 7.05779 7.32267 8.86893 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.002107 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.453434 B =13285.331905 C =14188.678052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.059 4.059 3 C -0.135 4.135 4 C -0.091 4.091 5 C -0.133 4.133 6 C -0.079 4.079 7 C -0.075 4.075 8 C 0.143 3.857 9 N -0.308 5.308 10 O -0.216 6.216 11 C 0.027 3.973 12 H 0.143 0.857 13 C 0.516 3.484 14 O -0.573 6.573 15 N -0.701 5.701 16 C 0.125 3.875 17 C -0.099 4.099 18 C -0.015 4.015 19 C -0.528 4.528 20 H 0.041 0.959 21 C 0.005 3.995 22 N -0.949 5.949 23 Si 0.944 3.056 24 H -0.269 1.269 25 H -0.285 1.285 26 H -0.249 1.249 27 C -0.132 4.132 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.421 0.579 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.018 0.982 42 H 0.266 0.734 43 H 0.111 0.889 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 33.026 -4.378 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.150 4.150 6 C -0.099 4.099 7 C -0.076 4.076 8 C -0.045 4.045 9 N -0.052 5.052 10 O -0.230 6.230 11 C -0.035 4.035 12 H 0.160 0.840 13 C 0.300 3.700 14 O -0.452 6.452 15 N -0.355 5.355 16 C 0.002 3.998 17 C -0.136 4.136 18 C -0.053 4.053 19 C -0.566 4.566 20 H 0.059 0.941 21 C -0.192 4.192 22 N -0.590 5.590 23 Si 0.768 3.232 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.172 1.172 27 C -0.171 4.171 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.258 0.742 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.491 33.021 -3.673 33.527 hybrid contribution 0.525 -1.448 0.262 1.563 sum -3.966 31.572 -3.410 32.003 Atomic orbital electron populations 1.21193 0.90816 1.04112 1.02782 1.20319 0.96683 0.92717 0.96412 1.21284 0.95068 0.97420 1.01466 1.21752 0.93928 0.99751 0.95523 1.21471 1.01713 0.91583 1.00277 1.21550 0.91362 1.00580 0.96410 1.17892 0.93478 0.87721 1.08542 1.24662 0.91648 0.95863 0.92325 1.78649 1.14795 0.95364 1.16425 1.91374 1.31917 1.11662 1.88073 1.23676 0.88010 0.90461 1.01307 0.83989 1.20497 0.80897 0.85444 0.83141 1.90740 1.40971 1.79557 1.33899 1.45801 1.32728 1.16885 1.40056 1.21380 0.99305 0.83203 0.95931 1.21477 0.96860 0.95036 1.00275 1.19488 0.95526 0.93891 0.96357 1.21454 1.14211 1.01361 1.19552 0.94065 1.25957 0.96533 0.97239 0.99506 1.70049 1.32094 1.12159 1.44659 0.85743 0.78892 0.78953 0.79588 1.19449 1.21102 1.17220 1.23056 0.99587 0.87145 1.07339 0.91443 0.89974 0.90137 0.83822 0.82967 0.82703 0.82949 0.74167 0.92459 0.92212 0.91043 0.91371 0.96122 0.96411 0.92556 0.87110 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.18 71.24 0.65 -1.54 16 2 C -0.06 -0.91 5.91 -19.60 -0.12 -1.03 16 3 C -0.13 -1.45 9.69 22.23 0.22 -1.23 16 4 C -0.09 -0.70 10.04 22.33 0.22 -0.48 16 5 C -0.13 -1.01 10.03 22.23 0.22 -0.78 16 6 C -0.08 -0.79 9.61 22.53 0.22 -0.57 16 7 C -0.08 -1.15 5.87 -20.13 -0.12 -1.27 16 8 C 0.14 2.66 7.05 45.76 0.32 2.98 16 9 N -0.31 -7.77 8.97 -42.23 -0.38 -8.14 16 10 O -0.22 -6.44 11.83 -20.30 -0.24 -6.68 16 11 C 0.03 0.57 4.23 30.44 0.13 0.70 16 12 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 13 C 0.52 14.07 7.13 87.66 0.63 14.70 16 14 O -0.57 -22.11 16.59 14.98 0.25 -21.87 16 15 N -0.70 -16.06 5.56 -463.06 -2.57 -18.63 16 16 C 0.13 3.73 5.67 86.38 0.49 4.22 16 17 C -0.10 -3.29 5.27 30.59 0.16 -3.13 16 18 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 19 C -0.53 -29.13 9.66 25.60 0.25 -28.88 16 20 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 21 C 0.00 0.27 5.47 84.65 0.46 0.73 16 22 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16 23 Si 0.94 43.93 27.47 68.60 1.88 45.82 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 26 H -0.25 -10.83 6.54 99.48 0.65 -10.17 16 27 C -0.13 -1.87 5.81 30.75 0.18 -1.69 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 30 H 0.08 1.67 5.19 -2.39 -0.01 1.66 16 31 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.15 0.37 8.06 -2.91 -0.02 0.34 16 33 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 34 H 0.15 0.77 7.37 -2.91 -0.02 0.75 16 35 H 0.42 6.34 8.47 -92.71 -0.79 5.55 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 41 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.11 1.64 7.90 -2.38 -0.02 1.62 16 44 H 0.16 0.80 7.96 -2.39 -0.02 0.78 16 Total: -1.00 -79.87 368.88 3.45 -76.42 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.17 Total: 8.97 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 4.04 Total: -17.80 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.65 Total: -84.86 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: 0.01 Total: -28.55 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -79.87 3.45 -76.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal (2) G-P(sol) polarization free energy of solvation -79.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds