Wall clock time and date at job start Tue Mar 31 2020 11:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38388 * 120.01345 * 2 1 4 4 C 1.38244 * 119.76681 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.35060 * 0.19314 * 4 3 2 6 6 C 1.39237 * 120.24300 * 0.02562 * 5 4 3 7 7 C 1.37704 * 120.00846 * 179.97438 * 2 1 3 8 8 C 1.51933 * 132.11019 * 358.86544 * 7 2 1 9 9 C 1.54700 * 101.79618 * 195.83773 * 8 7 2 10 10 H 1.09005 * 110.74924 * 93.34071 * 9 8 7 11 11 C 1.50698 * 110.74918 * 216.50804 * 9 8 7 12 12 O 1.21287 * 120.00009 * 112.48637 * 11 9 8 13 13 N 1.34780 * 120.00303 * 292.48433 * 11 9 8 14 14 C 1.47026 * 125.64285 * 359.97438 * 13 11 9 15 15 C 1.54321 * 107.26791 * 181.07596 * 14 13 11 16 16 C 1.55448 * 102.96961 * 22.19024 * 15 14 13 17 17 H 1.09004 * 111.00873 * 82.52495 * 16 15 14 18 18 N 1.46502 * 111.11836 * 206.45988 * 16 15 14 19 19 C 1.36935 * 120.00384 * 267.10449 * 18 16 15 20 20 H 1.08004 * 119.99944 * 359.97438 * 19 18 16 21 21 C 1.38806 * 119.99969 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00246 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47065 * 90.00118 * 23 21 19 25 25 H 1.48493 * 109.47578 * 210.00236 * 23 21 19 26 26 H 1.48508 * 109.47037 * 330.00713 * 23 21 19 27 27 C 1.47419 * 125.65139 * 179.97438 * 13 11 9 28 28 O 1.36138 * 129.90380 * 179.53367 * 6 5 4 29 29 H 1.08993 * 109.47224 * 270.02464 * 1 2 3 30 30 H 1.09001 * 109.46882 * 30.02799 * 1 2 3 31 31 H 1.09006 * 109.46992 * 150.02041 * 1 2 3 32 32 H 1.07999 * 120.11901 * 359.93746 * 3 2 1 33 33 H 1.07999 * 119.82449 * 180.21506 * 4 3 2 34 34 H 1.08006 * 119.87997 * 180.02562 * 5 4 3 35 35 H 1.08999 * 110.90286 * 77.76693 * 8 7 2 36 36 H 1.08998 * 111.10428 * 313.99795 * 8 7 2 37 37 H 1.08998 * 109.88266 * 300.48971 * 14 13 11 38 38 H 1.09000 * 109.88221 * 61.65788 * 14 13 11 39 39 H 1.08998 * 110.71927 * 140.55469 * 15 14 13 40 40 H 1.08998 * 110.72073 * 263.64892 * 15 14 13 41 41 H 0.97001 * 119.99399 * 87.10479 * 18 16 15 42 42 H 0.97000 * 119.99979 * 180.02562 * 22 21 19 43 43 H 1.09002 * 110.36926 * 274.69484 * 27 13 11 44 44 H 1.08995 * 110.36556 * 36.90768 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1983 0.0000 4 6 3.5817 1.1924 0.0005 5 6 4.2737 -0.0013 -0.0029 6 6 3.5848 -1.2113 -0.0076 7 6 2.1957 -1.1924 0.0005 8 6 1.7294 -2.6383 0.0235 9 6 3.0257 -3.3824 0.4223 10 1 3.0728 -3.5245 1.5021 11 6 3.1236 -4.7052 -0.2929 12 8 3.9849 -4.8803 -1.1287 13 7 2.2541 -5.6936 -0.0039 14 6 1.1670 -5.6170 0.9830 15 6 0.4570 -6.9872 0.9897 16 6 1.5392 -7.9437 0.4148 17 1 2.2377 -8.2553 1.1915 18 7 0.9260 -9.1054 -0.2338 19 6 0.7202 -10.2573 0.4773 20 1 1.0103 -10.3097 1.5163 21 6 0.1387 -11.3578 -0.1373 22 7 -0.2144 -11.2942 -1.4036 23 14 -0.1414 -12.9295 0.8325 24 1 -1.4834 -12.8871 1.4672 25 1 -0.0633 -14.0964 -0.0825 26 1 0.8997 -13.0545 1.8842 27 6 2.2356 -7.0305 -0.6249 28 8 4.0603 -2.4869 -0.0200 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6614 2.1349 -0.0010 33 1 4.1228 2.1270 0.0041 34 1 5.3538 0.0029 -0.0021 35 1 1.3877 -2.9524 -0.9627 36 1 0.9493 -2.7872 0.7701 37 1 1.5773 -5.4073 1.9708 38 1 0.4623 -4.8357 0.6984 39 1 0.1870 -7.2766 2.0053 40 1 -0.4242 -6.9680 0.3485 41 1 0.6658 -9.0584 -1.1671 42 1 -0.6211 -12.0631 -1.8329 43 1 1.6655 -7.0095 -1.5538 44 1 3.2523 -7.3758 -0.8124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970489357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:18 Heat of formation + Delta-G solvation = -21.343707 kcal Electronic energy + Delta-G solvation = -25870.892399 eV Core-core repulsion = 22174.932714 eV Total energy + Delta-G solvation = -3695.959685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64742 -39.68739 -37.98315 -37.09659 -34.31273 -33.63886 -31.92969 -31.27263 -30.10335 -29.61501 -27.83502 -26.93259 -24.87005 -23.51570 -22.67797 -22.32115 -21.17826 -20.22409 -19.44381 -17.85045 -17.46838 -16.97805 -16.90110 -16.41287 -15.76316 -15.56162 -14.65601 -14.52842 -14.14023 -14.03318 -13.85064 -13.62517 -13.55358 -13.34721 -13.20260 -12.95191 -12.73356 -12.65710 -12.39625 -12.30045 -11.86510 -11.83004 -11.68717 -11.31174 -11.24319 -11.06840 -10.90330 -10.76685 -10.36673 -10.13423 -9.85549 -9.74557 -9.02285 -8.97655 -8.55746 -8.39500 -7.11688 -5.87704 -3.18840 0.98590 1.08469 2.40491 2.54633 3.26786 3.37552 3.43011 3.44951 3.47162 4.01069 4.16560 4.41192 4.49708 4.54515 4.66462 4.71231 4.88012 4.93105 5.01955 5.10381 5.17747 5.20526 5.27045 5.31241 5.37963 5.42324 5.49330 5.50706 5.54270 5.67374 5.82194 5.87528 6.04299 6.06115 6.11795 6.14531 6.24699 6.26948 6.30869 6.44338 6.52750 6.81197 6.91728 7.52376 7.60213 8.11053 8.29406 9.41200 9.94190 10.28970 11.34307 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031459 B = 0.002444 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.823473 B =11452.613321 C =11935.731505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.153 4.153 4 C -0.081 4.081 5 C -0.143 4.143 6 C 0.112 3.888 7 C -0.175 4.175 8 C -0.095 4.095 9 C 0.070 3.930 10 H 0.112 0.888 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.607 5.607 14 C 0.095 3.905 15 C -0.156 4.156 16 C 0.173 3.827 17 H 0.068 0.932 18 N -0.713 5.713 19 C -0.247 4.247 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.099 3.901 28 O -0.274 6.274 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 25.598 6.042 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.171 4.171 4 C -0.099 4.099 5 C -0.162 4.162 6 C 0.067 3.933 7 C -0.176 4.176 8 C -0.132 4.132 9 C 0.010 3.990 10 H 0.130 0.870 11 C 0.316 3.684 12 O -0.396 6.396 13 N -0.343 5.343 14 C -0.028 4.028 15 C -0.197 4.197 16 C 0.061 3.939 17 H 0.086 0.914 18 N -0.353 5.353 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.024 4.024 28 O -0.187 6.187 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.581 25.273 5.605 26.015 hybrid contribution -0.448 -0.871 0.259 1.013 sum 2.133 24.402 5.863 25.187 Atomic orbital electron populations 1.20826 0.90826 1.03137 1.02635 1.19123 0.96043 0.91030 0.97197 1.20927 0.94138 0.97161 1.04844 1.20851 0.94169 0.96992 0.97840 1.20247 1.00383 0.88767 1.06785 1.19618 0.91971 0.85729 0.96003 1.20592 0.93542 0.94748 1.08669 1.21756 0.96915 0.90287 1.04227 1.23119 0.86863 0.89367 0.99627 0.87033 1.19527 0.81442 0.84049 0.83338 1.90758 1.34593 1.81088 1.33154 1.48307 1.31221 1.13920 1.40826 1.22255 0.88822 1.00231 0.91542 1.23484 1.00402 0.92931 1.02884 1.21340 0.92410 0.86976 0.93221 0.91366 1.42257 1.71785 1.09152 1.12064 1.19215 1.34167 0.89900 0.94489 0.90919 1.24783 1.01311 0.98394 0.96094 1.69661 1.46981 1.30748 1.10270 0.86162 0.77967 0.83072 0.78773 1.21598 1.21686 1.20650 1.22667 1.02225 0.80270 0.97255 1.86963 1.36736 1.13027 1.81948 0.90756 0.91205 0.91299 0.85470 0.85079 0.85314 0.88617 0.87986 0.91664 0.91735 0.90526 0.90449 0.77889 0.93289 0.91114 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.91 36.01 0.36 -0.42 16 2 C -0.03 -0.31 5.87 -104.76 -0.61 -0.92 16 3 C -0.15 -1.23 9.73 -39.52 -0.38 -1.62 16 4 C -0.08 -0.66 10.02 -39.68 -0.40 -1.06 16 5 C -0.14 -1.48 10.06 -39.31 -0.40 -1.87 16 6 C 0.11 1.40 7.04 -38.95 -0.27 1.13 16 7 C -0.17 -1.90 6.08 -103.95 -0.63 -2.54 16 8 C -0.09 -0.97 5.14 -26.38 -0.14 -1.10 16 9 C 0.07 0.87 3.41 -26.99 -0.09 0.78 16 10 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 11 C 0.53 8.36 7.18 -10.98 -0.08 8.28 16 12 O -0.52 -10.51 16.82 -13.53 -0.23 -10.73 16 13 N -0.61 -8.91 3.33 -170.52 -0.57 -9.48 16 14 C 0.09 1.11 6.20 -3.06 -0.02 1.09 16 15 C -0.16 -2.31 6.66 -24.74 -0.16 -2.48 16 16 C 0.17 3.17 3.73 -65.62 -0.24 2.93 16 17 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 18 N -0.71 -16.80 5.25 -51.19 -0.27 -17.06 16 19 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.10 1.69 6.54 -2.53 -0.02 1.68 16 28 O -0.27 -4.04 10.39 -39.26 -0.41 -4.45 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.10 1.05 7.92 -51.93 -0.41 0.64 16 36 H 0.10 0.77 7.35 -51.93 -0.38 0.39 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 6.66 -51.93 -0.35 0.27 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.39 9.76 7.76 -40.82 -0.32 9.44 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 44 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -32.67 363.44 -10.09 -42.77 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.46 Total: 6.43 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.34 Total: -3.11 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.11 Total: -52.97 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.64 Total: -15.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.67 -10.09 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970489357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.423 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds