Wall clock time and date at job start Tue Mar 31 2020 11:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38388 * 120.01345 * 2 1 4 4 C 1.38244 * 119.76681 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.35060 * 0.19314 * 4 3 2 6 6 C 1.39237 * 120.24300 * 0.02562 * 5 4 3 7 7 C 1.37704 * 120.00846 * 179.97438 * 2 1 3 8 8 C 1.51933 * 132.11019 * 358.86544 * 7 2 1 9 9 C 1.54700 * 101.79618 * 195.83773 * 8 7 2 10 10 H 1.09005 * 110.74924 * 93.34071 * 9 8 7 11 11 C 1.50698 * 110.74918 * 216.50804 * 9 8 7 12 12 O 1.21287 * 120.00009 * 112.48637 * 11 9 8 13 13 N 1.34780 * 120.00303 * 292.48433 * 11 9 8 14 14 C 1.47026 * 125.64285 * 359.97438 * 13 11 9 15 15 C 1.54321 * 107.26791 * 181.07596 * 14 13 11 16 16 C 1.55448 * 102.96961 * 22.19024 * 15 14 13 17 17 H 1.09004 * 111.00873 * 82.52495 * 16 15 14 18 18 N 1.46502 * 111.11836 * 206.45988 * 16 15 14 19 19 C 1.36935 * 120.00384 * 267.10449 * 18 16 15 20 20 H 1.08004 * 119.99944 * 359.97438 * 19 18 16 21 21 C 1.38806 * 119.99969 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00246 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47065 * 90.00118 * 23 21 19 25 25 H 1.48493 * 109.47578 * 210.00236 * 23 21 19 26 26 H 1.48508 * 109.47037 * 330.00713 * 23 21 19 27 27 C 1.47419 * 125.65139 * 179.97438 * 13 11 9 28 28 O 1.36138 * 129.90380 * 179.53367 * 6 5 4 29 29 H 1.08993 * 109.47224 * 270.02464 * 1 2 3 30 30 H 1.09001 * 109.46882 * 30.02799 * 1 2 3 31 31 H 1.09006 * 109.46992 * 150.02041 * 1 2 3 32 32 H 1.07999 * 120.11901 * 359.93746 * 3 2 1 33 33 H 1.07999 * 119.82449 * 180.21506 * 4 3 2 34 34 H 1.08006 * 119.87997 * 180.02562 * 5 4 3 35 35 H 1.08999 * 110.90286 * 77.76693 * 8 7 2 36 36 H 1.08998 * 111.10428 * 313.99795 * 8 7 2 37 37 H 1.08998 * 109.88266 * 300.48971 * 14 13 11 38 38 H 1.09000 * 109.88221 * 61.65788 * 14 13 11 39 39 H 1.08998 * 110.71927 * 140.55469 * 15 14 13 40 40 H 1.08998 * 110.72073 * 263.64892 * 15 14 13 41 41 H 0.97001 * 119.99399 * 87.10479 * 18 16 15 42 42 H 0.97000 * 119.99979 * 180.02562 * 22 21 19 43 43 H 1.09002 * 110.36926 * 274.69484 * 27 13 11 44 44 H 1.08995 * 110.36556 * 36.90768 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1983 0.0000 4 6 3.5817 1.1924 0.0005 5 6 4.2737 -0.0013 -0.0029 6 6 3.5848 -1.2113 -0.0076 7 6 2.1957 -1.1924 0.0005 8 6 1.7294 -2.6383 0.0235 9 6 3.0257 -3.3824 0.4223 10 1 3.0728 -3.5245 1.5021 11 6 3.1236 -4.7052 -0.2929 12 8 3.9849 -4.8803 -1.1287 13 7 2.2541 -5.6936 -0.0039 14 6 1.1670 -5.6170 0.9830 15 6 0.4570 -6.9872 0.9897 16 6 1.5392 -7.9437 0.4148 17 1 2.2377 -8.2553 1.1915 18 7 0.9260 -9.1054 -0.2338 19 6 0.7202 -10.2573 0.4773 20 1 1.0103 -10.3097 1.5163 21 6 0.1387 -11.3578 -0.1373 22 7 -0.2144 -11.2942 -1.4036 23 14 -0.1414 -12.9295 0.8325 24 1 -1.4834 -12.8871 1.4672 25 1 -0.0633 -14.0964 -0.0825 26 1 0.8997 -13.0545 1.8842 27 6 2.2356 -7.0305 -0.6249 28 8 4.0603 -2.4869 -0.0200 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6614 2.1349 -0.0010 33 1 4.1228 2.1270 0.0041 34 1 5.3538 0.0029 -0.0021 35 1 1.3877 -2.9524 -0.9627 36 1 0.9493 -2.7872 0.7701 37 1 1.5773 -5.4073 1.9708 38 1 0.4623 -4.8357 0.6984 39 1 0.1870 -7.2766 2.0053 40 1 -0.4242 -6.9680 0.3485 41 1 0.6658 -9.0584 -1.1671 42 1 -0.6211 -12.0631 -1.8329 43 1 1.6655 -7.0095 -1.5538 44 1 3.2523 -7.3758 -0.8124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970489357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:15 Heat of formation + Delta-G solvation = -41.133700 kcal Electronic energy + Delta-G solvation = -25871.750557 eV Core-core repulsion = 22174.932714 eV Total energy + Delta-G solvation = -3696.817844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53359 -40.86704 -38.96735 -38.29167 -36.01434 -34.45081 -33.41216 -32.24887 -31.26951 -30.78463 -29.17798 -27.64270 -26.08372 -25.15773 -23.81354 -23.08565 -21.89130 -21.68691 -20.59130 -19.33828 -18.84702 -18.04952 -17.69733 -17.55774 -16.93101 -16.59802 -16.26338 -15.79620 -15.31286 -15.04619 -14.75622 -14.71451 -14.57405 -14.55186 -14.27594 -13.97485 -13.79080 -13.61850 -13.36556 -13.18899 -13.11896 -13.02006 -12.84993 -12.66834 -12.40593 -12.35718 -12.14664 -12.07667 -11.79384 -11.74189 -11.60531 -11.03627 -10.94819 -9.81011 -9.64357 -9.16423 -9.05862 -7.95660 -5.25924 0.29928 0.36754 1.27204 1.39646 1.50105 1.51006 1.59285 2.35661 2.56822 2.71260 3.08720 3.28918 3.37283 3.61520 3.67105 3.81000 3.87239 3.90452 4.02758 4.11419 4.22149 4.25552 4.31527 4.43656 4.48356 4.49156 4.57804 4.60843 4.70202 4.80307 4.84912 4.87856 4.93691 4.97367 5.10233 5.25394 5.28599 5.35350 5.42029 5.46042 5.53562 5.59243 5.66466 6.15887 6.24969 6.33710 6.88264 7.31957 8.03056 8.26753 9.27571 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031459 B = 0.002444 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.823473 B =11452.613321 C =11935.731505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.150 4.150 4 C -0.078 4.078 5 C -0.159 4.159 6 C 0.075 3.925 7 C -0.185 4.185 8 C -0.087 4.087 9 C 0.074 3.926 10 H 0.142 0.858 11 C 0.528 3.472 12 O -0.577 6.577 13 N -0.602 5.602 14 C 0.098 3.902 15 C -0.143 4.143 16 C 0.166 3.834 17 H 0.066 0.934 18 N -0.728 5.728 19 C -0.240 4.240 20 H 0.082 0.918 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.269 1.269 27 C 0.106 3.894 28 O -0.310 6.310 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 28.303 8.484 29.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.040 4.040 3 C -0.168 4.168 4 C -0.096 4.096 5 C -0.177 4.177 6 C 0.030 3.970 7 C -0.186 4.186 8 C -0.124 4.124 9 C 0.015 3.985 10 H 0.159 0.841 11 C 0.316 3.684 12 O -0.456 6.456 13 N -0.336 5.336 14 C -0.024 4.024 15 C -0.184 4.184 16 C 0.056 3.944 17 H 0.084 0.916 18 N -0.367 5.367 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.227 1.227 26 H -0.194 1.194 27 C -0.018 4.018 28 O -0.224 6.224 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.194 28.034 8.118 29.210 hybrid contribution 0.046 -1.563 -0.503 1.643 sum 1.240 26.471 7.615 27.572 Atomic orbital electron populations 1.20885 0.88924 1.03779 1.03713 1.19506 0.97512 0.90658 0.96328 1.21362 0.94222 0.98073 1.03112 1.21230 0.94660 0.97230 0.96468 1.20544 1.00906 0.89088 1.07192 1.19983 0.93247 0.85322 0.98420 1.20745 0.92948 0.95591 1.09300 1.21766 0.96395 0.89632 1.04572 1.23207 0.87813 0.87189 1.00297 0.84102 1.20240 0.80371 0.85165 0.82648 1.90725 1.36942 1.82213 1.35764 1.48303 1.31766 1.12578 1.40928 1.22476 0.88307 0.99137 0.92457 1.23263 0.98761 0.93454 1.02925 1.21501 0.93476 0.86294 0.93142 0.91561 1.42406 1.72393 1.10252 1.11662 1.19614 1.32107 0.90546 0.94860 0.89989 1.25577 1.02424 1.01613 0.97056 1.69820 1.48953 1.31234 1.11954 0.85141 0.78109 0.79060 0.77427 1.21131 1.22717 1.19375 1.22347 1.00673 0.81868 0.96893 1.86902 1.38135 1.14450 1.82875 0.89315 0.89824 0.91486 0.82572 0.82193 0.85115 0.89840 0.84547 0.88212 0.88402 0.89176 0.91491 0.79355 0.94021 0.92160 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.91 71.24 0.71 -0.41 16 2 C -0.04 -0.61 5.87 -19.95 -0.12 -0.73 16 3 C -0.15 -1.93 9.73 22.31 0.22 -1.71 16 4 C -0.08 -1.09 10.02 22.21 0.22 -0.87 16 5 C -0.16 -3.17 10.06 22.45 0.23 -2.94 16 6 C 0.07 1.84 7.04 22.68 0.16 2.00 16 7 C -0.19 -3.70 6.08 -19.43 -0.12 -3.82 16 8 C -0.09 -1.57 5.14 30.82 0.16 -1.41 16 9 C 0.07 1.75 3.41 30.43 0.10 1.86 16 10 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 11 C 0.53 16.61 7.18 87.66 0.63 17.24 16 12 O -0.58 -24.37 16.82 15.19 0.26 -24.12 16 13 N -0.60 -17.09 3.33 -811.78 -2.70 -19.79 16 14 C 0.10 1.96 6.20 86.73 0.54 2.49 16 15 C -0.14 -3.94 6.66 31.88 0.21 -3.72 16 16 C 0.17 6.05 3.73 46.49 0.17 6.22 16 17 H 0.07 2.44 8.09 -2.38 -0.02 2.42 16 18 N -0.73 -34.82 5.25 -315.87 -1.66 -36.48 16 19 C -0.24 -12.62 9.96 84.03 0.84 -11.78 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 23 Si 0.97 44.73 29.55 68.60 2.03 46.75 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C 0.11 3.73 6.54 86.86 0.57 4.30 16 28 O -0.31 -9.28 10.39 -76.89 -0.80 -10.08 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.07 0.68 7.79 -2.38 -0.02 0.66 16 32 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.08 1.72 7.92 -2.39 -0.02 1.70 16 36 H 0.14 1.45 7.35 -2.39 -0.02 1.43 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.41 6.66 -2.39 -0.02 1.40 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.37 19.55 7.76 -92.71 -0.72 18.84 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.06 2.24 8.00 -2.39 -0.02 2.22 16 44 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 Total: -1.00 -74.93 363.44 2.68 -72.25 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.29 Total: 26.23 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.98 Total: 3.05 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.08 Total: -114.08 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.54 Total: -34.19 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.93 2.68 -72.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970489357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.115 kcal (2) G-P(sol) polarization free energy of solvation -74.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds