Wall clock time and date at job start Tue Mar 31 2020 11:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00510 * 2 1 4 4 H 1.48495 * 109.46804 * 264.98701 * 3 2 1 5 5 H 1.48499 * 109.46829 * 24.98253 * 3 2 1 6 6 H 1.48490 * 109.47270 * 144.98214 * 3 2 1 7 7 C 1.38809 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00637 * 194.04362 * 7 2 1 9 9 N 1.36944 * 119.99889 * 14.05359 * 7 2 1 10 10 C 1.46904 * 120.68850 * 208.82345 * 9 7 2 11 11 C 1.52667 * 109.34156 * 235.30814 * 10 9 7 12 12 C 1.53186 * 109.42930 * 303.76656 * 11 10 9 13 13 C 1.52632 * 109.35419 * 58.93080 * 12 11 10 14 14 C 1.53459 * 113.68513 * 74.05550 * 13 12 11 15 15 N 1.47672 * 85.96469 * 91.17975 * 14 13 12 16 16 C 1.34773 * 134.45707 * 204.28558 * 15 14 13 17 17 O 1.21773 * 120.00626 * 179.97438 * 16 15 14 18 18 C 1.41558 * 119.99903 * 0.02562 * 16 15 14 19 19 C 1.35621 * 120.00201 * 179.97438 * 18 16 15 20 20 C 1.41607 * 119.99963 * 179.97438 * 19 18 16 21 21 C 1.37949 * 126.10395 * 179.97438 * 20 19 18 22 22 C 1.40317 * 106.53230 * 179.97438 * 21 20 19 23 23 C 1.35151 * 107.20093 * 0.02562 * 22 21 20 24 24 O 1.34020 * 109.03889 * 359.75502 * 23 22 21 25 25 C 1.47680 * 91.09244 * 24.28655 * 15 14 13 26 26 C 1.47111 * 120.69171 * 29.09072 * 9 7 2 27 27 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.53323 * 355.23092 * 10 9 7 29 29 H 1.08993 * 109.53903 * 115.46951 * 10 9 7 30 30 H 1.08998 * 109.56258 * 183.71730 * 11 10 9 31 31 H 1.09000 * 109.34734 * 63.68933 * 11 10 9 32 32 H 1.08998 * 109.48806 * 298.96639 * 12 11 10 33 33 H 1.08996 * 109.49116 * 178.89691 * 12 11 10 34 34 H 1.08994 * 113.79258 * 205.44268 * 14 13 12 35 35 H 1.09000 * 113.79110 * 336.92056 * 14 13 12 36 36 H 1.07996 * 119.99631 * 359.97438 * 18 16 15 37 37 H 1.07997 * 120.00150 * 0.02562 * 19 18 16 38 38 H 1.08004 * 126.73402 * 359.97438 * 21 20 19 39 39 H 1.07994 * 126.39730 * 179.97438 * 22 21 20 40 40 H 1.08000 * 125.48068 * 179.97438 * 23 22 21 41 41 H 1.08997 * 113.78903 * 221.44625 * 25 15 14 42 42 H 1.08995 * 113.79129 * 89.97586 * 25 15 14 43 43 H 1.09002 * 109.64140 * 248.31287 * 26 9 7 44 44 H 1.09004 * 109.63639 * 8.92455 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 1.3988 2.6809 0.5913 6 1 3.4908 1.4730 0.8033 7 6 2.0102 -1.2021 0.0005 8 1 3.0660 -1.2162 0.2275 9 7 1.3562 -2.3705 -0.2869 10 6 1.8141 -3.6454 0.2812 11 6 2.0701 -4.6396 -0.8488 12 6 0.7993 -4.7926 -1.6905 13 6 0.4014 -3.4325 -2.2576 14 6 1.2991 -2.9578 -3.4081 15 7 0.3323 -3.6285 -4.3005 16 6 0.3973 -4.1482 -5.5423 17 8 -0.5903 -4.6554 -6.0426 18 6 1.6139 -4.1055 -6.2647 19 6 1.6795 -4.6290 -7.5141 20 6 2.8964 -4.5857 -8.2369 21 6 3.1043 -5.0777 -9.5088 22 6 4.4472 -4.8189 -9.8225 23 6 4.9937 -4.1947 -8.7556 24 8 4.0584 -4.0515 -7.8065 25 6 -0.7343 -3.5015 -3.2870 26 6 0.1839 -2.3757 -1.1757 27 1 -0.4850 0.8401 -0.0004 28 1 2.7365 -3.4853 0.8393 29 1 1.0485 -4.0439 0.9467 30 1 2.3465 -5.6066 -0.4286 31 1 2.8805 -4.2709 -1.4776 32 1 -0.0070 -5.1759 -1.0652 33 1 0.9868 -5.4873 -2.5092 34 1 1.3276 -1.8746 -3.5254 35 1 2.2891 -3.4139 -3.4103 36 1 2.4899 -3.6561 -5.8209 37 1 0.8034 -5.0780 -7.9581 38 1 2.3762 -5.5663 -10.1395 39 1 4.9504 -5.0720 -10.7439 40 1 6.0183 -3.8614 -8.6813 41 1 -1.3596 -4.3893 -3.1932 42 1 -1.3106 -2.5799 -3.3684 43 1 -0.7103 -2.6180 -0.6014 44 1 0.0709 -1.3953 -1.6387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981588460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:03 Heat of formation + Delta-G solvation = 56.290913 kcal Electronic energy + Delta-G solvation = -26211.211305 eV Core-core repulsion = 22518.618110 eV Total energy + Delta-G solvation = -3692.593195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.77703 -40.48472 -38.43222 -35.79613 -34.20992 -33.27885 -32.88146 -30.63574 -30.03286 -28.98204 -26.18882 -25.90912 -25.38341 -23.51687 -22.28273 -22.10371 -20.84691 -20.19294 -18.67154 -17.85171 -17.68940 -16.80502 -16.74632 -16.31507 -15.72976 -15.50038 -14.96224 -14.56404 -13.99391 -13.86691 -13.60420 -13.52048 -13.26258 -13.06944 -12.91589 -12.85767 -12.51108 -12.30719 -12.19394 -11.84150 -11.65760 -11.19671 -10.98196 -10.80756 -10.79724 -10.49297 -10.33883 -10.20140 -10.16483 -9.96700 -9.76579 -9.54140 -9.39891 -8.53681 -8.45108 -8.08288 -6.69685 -5.83832 -3.27761 0.31287 1.91469 2.50505 2.71506 3.15657 3.34408 3.41851 3.42459 3.55647 4.42730 4.45046 4.64741 4.67958 4.79330 5.01200 5.07632 5.24070 5.36364 5.40037 5.41049 5.50065 5.55342 5.69594 5.74833 5.80595 5.81484 5.87736 5.91383 5.97614 6.00479 6.09984 6.19936 6.23119 6.35910 6.38346 6.51444 6.61588 6.73683 6.81862 6.83582 6.96902 7.22843 7.54030 7.75074 7.99938 8.35603 8.39807 9.16359 9.78783 10.36685 11.24960 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.003286 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.672257 B = 8518.378080 C = 9309.051830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.083 4.083 13 C -0.112 4.112 14 C 0.121 3.879 15 N -0.633 5.633 16 C 0.563 3.437 17 O -0.562 6.562 18 C -0.184 4.184 19 C -0.007 4.007 20 C -0.001 4.001 21 C -0.171 4.171 22 C -0.219 4.219 23 C -0.023 4.023 24 O -0.164 6.164 25 C 0.116 3.884 26 C 0.191 3.809 27 H 0.255 0.745 28 H 0.053 0.947 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.206 0.794 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 -9.492 -14.480 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.121 4.121 13 C -0.114 4.114 14 C -0.001 4.001 15 N -0.367 5.367 16 C 0.356 3.644 17 O -0.444 6.444 18 C -0.205 4.205 19 C -0.027 4.027 20 C -0.050 4.050 21 C -0.191 4.191 22 C -0.238 4.238 23 C -0.092 4.092 24 O -0.059 6.059 25 C -0.007 4.007 26 C 0.064 3.936 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.222 0.778 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.044 0.956 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.209 -9.526 -14.580 18.490 hybrid contribution 0.612 0.929 -0.274 1.146 sum 6.821 -8.597 -14.854 18.469 Atomic orbital electron populations 1.69984 1.05180 1.25591 1.54103 1.25073 0.95336 0.98319 1.00730 0.86319 0.79057 0.83646 0.77807 1.21396 1.21731 1.20504 1.19164 0.91684 0.84224 1.43010 0.91677 1.44002 1.33245 1.02235 1.51781 1.20795 0.97572 0.86970 0.92835 1.21942 0.97150 0.99087 0.99096 1.21095 0.98137 0.94444 0.98384 1.22828 0.94109 0.98701 0.95777 1.23313 0.93862 0.97917 0.85006 1.50205 1.16001 1.56760 1.13689 1.16624 0.88661 0.79204 0.79863 1.90799 1.38328 1.47261 1.68025 1.22149 0.98853 1.03401 0.96082 1.20620 0.92986 0.95691 0.93408 1.19933 0.86318 1.03629 0.95164 1.22338 0.97425 1.03895 0.95398 1.21773 0.95276 1.05814 1.00982 1.24324 0.94481 1.02761 0.87651 1.84137 1.18347 1.62129 1.41332 1.23238 0.92248 1.01765 0.83407 1.20692 0.89035 0.95634 0.88201 0.93533 0.92864 0.96426 0.92984 0.92439 0.92067 0.93331 0.89143 0.90607 0.85328 0.82308 0.82685 0.83004 0.77761 0.90583 0.89451 0.95593 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.92 11.14 55.49 0.62 -24.31 16 2 C 0.00 0.11 4.98 -17.43 -0.09 0.02 16 3 Si 0.90 20.85 29.58 -169.99 -5.03 15.82 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.25 -6.47 9.59 -15.06 -0.14 -6.61 16 8 H 0.07 1.66 7.87 -52.49 -0.41 1.25 16 9 N -0.59 -13.69 3.01 -172.75 -0.52 -14.21 16 10 C 0.14 2.85 6.43 -3.99 -0.03 2.82 16 11 C -0.13 -2.18 5.99 -26.81 -0.16 -2.34 16 12 C -0.08 -1.34 5.02 -26.82 -0.13 -1.47 16 13 C -0.11 -1.94 0.87 -154.43 -0.13 -2.08 16 14 C 0.12 2.01 7.33 -3.17 -0.02 1.98 16 15 N -0.63 -10.54 3.45 -183.94 -0.63 -11.18 16 16 C 0.56 9.54 7.79 -15.00 -0.12 9.43 16 17 O -0.56 -10.98 16.84 5.12 0.09 -10.90 16 18 C -0.18 -2.60 9.23 -39.25 -0.36 -2.97 16 19 C -0.01 -0.09 9.39 -39.23 -0.37 -0.46 16 20 C 0.00 -0.01 6.84 -38.40 -0.26 -0.28 16 21 C -0.17 -1.64 10.90 -38.91 -0.42 -2.06 16 22 C -0.22 -1.81 10.87 -39.90 -0.43 -2.24 16 23 C -0.02 -0.19 12.06 29.63 0.36 0.16 16 24 O -0.16 -1.90 10.18 4.68 0.05 -1.85 16 25 C 0.12 1.92 7.97 -3.18 -0.03 1.90 16 26 C 0.19 4.14 4.40 -3.81 -0.02 4.12 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.95 7.37 -51.93 -0.38 0.57 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 34 H 0.09 1.58 7.97 -51.93 -0.41 1.17 16 35 H 0.08 1.19 7.37 -51.93 -0.38 0.80 16 36 H 0.13 1.73 7.45 -52.49 -0.39 1.34 16 37 H 0.16 1.87 7.46 -52.49 -0.39 1.47 16 38 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 42 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 2.20 6.02 -51.93 -0.31 1.89 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -30.67 363.86 -8.76 -39.43 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.45 Total: 1.77 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.36 Total: -0.06 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.54 Total: -49.69 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.13 Total: -12.75 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.67 -8.76 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981588460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.717 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds