Wall clock time and date at job start Tue Mar 31 2020 11:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00510 * 2 1 4 4 H 1.48495 * 109.46804 * 264.98701 * 3 2 1 5 5 H 1.48499 * 109.46829 * 24.98253 * 3 2 1 6 6 H 1.48490 * 109.47270 * 144.98214 * 3 2 1 7 7 C 1.38809 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00637 * 194.04362 * 7 2 1 9 9 N 1.36944 * 119.99889 * 14.05359 * 7 2 1 10 10 C 1.46904 * 120.68850 * 208.82345 * 9 7 2 11 11 C 1.52667 * 109.34156 * 235.30814 * 10 9 7 12 12 C 1.53186 * 109.42930 * 303.76656 * 11 10 9 13 13 C 1.52632 * 109.35419 * 58.93080 * 12 11 10 14 14 C 1.53459 * 113.68513 * 74.05550 * 13 12 11 15 15 N 1.47672 * 85.96469 * 91.17975 * 14 13 12 16 16 C 1.34773 * 134.45707 * 204.28558 * 15 14 13 17 17 O 1.21773 * 120.00626 * 179.97438 * 16 15 14 18 18 C 1.41558 * 119.99903 * 0.02562 * 16 15 14 19 19 C 1.35621 * 120.00201 * 179.97438 * 18 16 15 20 20 C 1.41607 * 119.99963 * 179.97438 * 19 18 16 21 21 C 1.37949 * 126.10395 * 179.97438 * 20 19 18 22 22 C 1.40317 * 106.53230 * 179.97438 * 21 20 19 23 23 C 1.35151 * 107.20093 * 0.02562 * 22 21 20 24 24 O 1.34020 * 109.03889 * 359.75502 * 23 22 21 25 25 C 1.47680 * 91.09244 * 24.28655 * 15 14 13 26 26 C 1.47111 * 120.69171 * 29.09072 * 9 7 2 27 27 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.53323 * 355.23092 * 10 9 7 29 29 H 1.08993 * 109.53903 * 115.46951 * 10 9 7 30 30 H 1.08998 * 109.56258 * 183.71730 * 11 10 9 31 31 H 1.09000 * 109.34734 * 63.68933 * 11 10 9 32 32 H 1.08998 * 109.48806 * 298.96639 * 12 11 10 33 33 H 1.08996 * 109.49116 * 178.89691 * 12 11 10 34 34 H 1.08994 * 113.79258 * 205.44268 * 14 13 12 35 35 H 1.09000 * 113.79110 * 336.92056 * 14 13 12 36 36 H 1.07996 * 119.99631 * 359.97438 * 18 16 15 37 37 H 1.07997 * 120.00150 * 0.02562 * 19 18 16 38 38 H 1.08004 * 126.73402 * 359.97438 * 21 20 19 39 39 H 1.07994 * 126.39730 * 179.97438 * 22 21 20 40 40 H 1.08000 * 125.48068 * 179.97438 * 23 22 21 41 41 H 1.08997 * 113.78903 * 221.44625 * 25 15 14 42 42 H 1.08995 * 113.79129 * 89.97586 * 25 15 14 43 43 H 1.09002 * 109.64140 * 248.31287 * 26 9 7 44 44 H 1.09004 * 109.63639 * 8.92455 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 1.3988 2.6809 0.5913 6 1 3.4908 1.4730 0.8033 7 6 2.0102 -1.2021 0.0005 8 1 3.0660 -1.2162 0.2275 9 7 1.3562 -2.3705 -0.2869 10 6 1.8141 -3.6454 0.2812 11 6 2.0701 -4.6396 -0.8488 12 6 0.7993 -4.7926 -1.6905 13 6 0.4014 -3.4325 -2.2576 14 6 1.2991 -2.9578 -3.4081 15 7 0.3323 -3.6285 -4.3005 16 6 0.3973 -4.1482 -5.5423 17 8 -0.5903 -4.6554 -6.0426 18 6 1.6139 -4.1055 -6.2647 19 6 1.6795 -4.6290 -7.5141 20 6 2.8964 -4.5857 -8.2369 21 6 3.1043 -5.0777 -9.5088 22 6 4.4472 -4.8189 -9.8225 23 6 4.9937 -4.1947 -8.7556 24 8 4.0584 -4.0515 -7.8065 25 6 -0.7343 -3.5015 -3.2870 26 6 0.1839 -2.3757 -1.1757 27 1 -0.4850 0.8401 -0.0004 28 1 2.7365 -3.4853 0.8393 29 1 1.0485 -4.0439 0.9467 30 1 2.3465 -5.6066 -0.4286 31 1 2.8805 -4.2709 -1.4776 32 1 -0.0070 -5.1759 -1.0652 33 1 0.9868 -5.4873 -2.5092 34 1 1.3276 -1.8746 -3.5254 35 1 2.2891 -3.4139 -3.4103 36 1 2.4899 -3.6561 -5.8209 37 1 0.8034 -5.0780 -7.9581 38 1 2.3762 -5.5663 -10.1395 39 1 4.9504 -5.0720 -10.7439 40 1 6.0183 -3.8614 -8.6813 41 1 -1.3596 -4.3893 -3.1932 42 1 -1.3106 -2.5799 -3.3684 43 1 -0.7103 -2.6180 -0.6014 44 1 0.0709 -1.3953 -1.6387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981588460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:00 Heat of formation + Delta-G solvation = 39.392812 kcal Electronic energy + Delta-G solvation = -26211.944062 eV Core-core repulsion = 22518.618110 eV Total energy + Delta-G solvation = -3693.325952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.52080 -41.86083 -39.80077 -37.39489 -35.20752 -34.62401 -34.01171 -32.09270 -31.71599 -29.96742 -27.52207 -27.30461 -27.15653 -24.55712 -23.94516 -22.84397 -22.19814 -21.23285 -19.93837 -19.19748 -18.79354 -18.53172 -17.80666 -17.11863 -16.98180 -16.94926 -16.44314 -15.82530 -15.61406 -15.30318 -15.11179 -14.91682 -14.44104 -14.10886 -14.07961 -13.91997 -13.71700 -13.49028 -13.39380 -13.16504 -13.14116 -12.82780 -12.67688 -12.53766 -12.22027 -11.97084 -11.79545 -11.74241 -11.56843 -11.29738 -11.05694 -10.88055 -10.86519 -10.50358 -9.76518 -8.96684 -8.59750 -7.82658 -5.28486 -0.62771 1.13533 1.49911 1.51604 1.58914 1.68771 1.86450 2.02165 2.38374 2.54396 3.26287 3.37794 3.52378 3.83442 3.88582 3.95262 4.03096 4.05189 4.09088 4.18123 4.34007 4.40986 4.44357 4.54838 4.59901 4.65129 4.67306 4.68759 4.79075 4.90088 5.02921 5.03476 5.06115 5.07459 5.16150 5.24926 5.29017 5.32305 5.44549 5.53345 5.58752 5.69269 5.76432 6.08076 6.44248 6.68283 7.06183 7.20329 7.90653 8.43557 9.23686 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.003286 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.672257 B = 8518.378080 C = 9309.051830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.960 3.040 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.607 5.607 10 C 0.140 3.860 11 C -0.121 4.121 12 C -0.077 4.077 13 C -0.104 4.104 14 C 0.130 3.870 15 N -0.634 5.634 16 C 0.565 3.435 17 O -0.596 6.596 18 C -0.222 4.222 19 C 0.029 3.971 20 C -0.048 4.048 21 C -0.152 4.152 22 C -0.229 4.229 23 C -0.012 4.012 24 O -0.186 6.186 25 C 0.116 3.884 26 C 0.204 3.796 27 H 0.249 0.751 28 H 0.053 0.947 29 H 0.014 0.986 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.181 0.819 40 H 0.242 0.758 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.000 1.000 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -10.894 -16.490 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.789 3.211 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.330 5.330 10 C 0.014 3.986 11 C -0.160 4.160 12 C -0.115 4.115 13 C -0.106 4.106 14 C 0.008 3.992 15 N -0.366 5.366 16 C 0.361 3.639 17 O -0.481 6.481 18 C -0.243 4.243 19 C 0.009 3.991 20 C -0.096 4.096 21 C -0.171 4.171 22 C -0.248 4.248 23 C -0.080 4.080 24 O -0.082 6.082 25 C -0.007 4.007 26 C 0.077 3.923 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.180 0.820 38 H 0.193 0.807 39 H 0.199 0.801 40 H 0.258 0.742 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.018 0.982 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.689 -10.953 -16.586 21.692 hybrid contribution -0.017 1.293 0.193 1.308 sum 8.672 -9.660 -16.393 20.910 Atomic orbital electron populations 1.70139 1.06461 1.25660 1.55841 1.25729 0.95975 1.01092 1.01375 0.85388 0.77997 0.79999 0.77699 1.21148 1.22614 1.19538 1.19453 0.91931 0.85320 1.41704 0.91531 1.44253 1.33293 1.02898 1.52523 1.20953 0.97234 0.86247 0.94120 1.21813 0.97078 0.99385 0.97726 1.21069 0.98230 0.93438 0.98751 1.22629 0.95051 0.98326 0.94603 1.23159 0.94369 0.97235 0.84429 1.50145 1.15717 1.56852 1.13897 1.16988 0.89137 0.78192 0.79563 1.90768 1.39640 1.49050 1.68669 1.21873 0.97870 1.07421 0.97133 1.20735 0.93574 0.92456 0.92369 1.19932 0.86463 1.06861 0.96377 1.22802 0.98540 1.01373 0.94393 1.22203 0.94738 1.05700 1.02149 1.25247 0.95301 1.00698 0.86786 1.84132 1.18841 1.62590 1.42606 1.23198 0.92243 1.01963 0.83325 1.20373 0.87815 0.95442 0.88640 0.94229 0.92798 0.96841 0.89924 0.92390 0.91736 0.91969 0.90572 0.89200 0.85056 0.81987 0.80665 0.80132 0.74175 0.89733 0.90010 0.98168 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.35 11.14 21.65 0.24 -53.11 16 2 C -0.05 -2.48 4.98 84.86 0.42 -2.06 16 3 Si 0.96 43.51 29.58 68.60 2.03 45.54 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.25 -13.20 9.59 84.03 0.81 -12.40 16 8 H 0.07 3.38 7.87 -2.91 -0.02 3.36 16 9 N -0.61 -28.50 3.01 -700.45 -2.11 -30.60 16 10 C 0.14 5.40 6.43 86.19 0.55 5.96 16 11 C -0.12 -3.70 5.99 30.55 0.18 -3.51 16 12 C -0.08 -2.38 5.02 30.53 0.15 -2.23 16 13 C -0.10 -3.63 0.87 -52.04 -0.05 -3.68 16 14 C 0.13 4.33 7.33 86.30 0.63 4.97 16 15 N -0.63 -21.24 3.45 -854.05 -2.95 -24.19 16 16 C 0.57 19.30 7.79 85.06 0.66 19.97 16 17 O -0.60 -23.54 16.84 -4.58 -0.08 -23.62 16 18 C -0.22 -6.28 9.23 22.48 0.21 -6.07 16 19 C 0.03 0.69 9.39 22.50 0.21 0.90 16 20 C -0.05 -1.03 6.84 23.03 0.16 -0.87 16 21 C -0.15 -2.46 10.90 22.71 0.25 -2.21 16 22 C -0.23 -2.90 10.87 22.06 0.24 -2.66 16 23 C -0.01 -0.16 12.06 67.11 0.81 0.65 16 24 O -0.19 -3.94 10.18 -6.17 -0.06 -4.01 16 25 C 0.12 3.90 7.97 86.29 0.69 4.59 16 26 C 0.20 9.14 4.40 86.20 0.38 9.52 16 27 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 28 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.79 7.37 -2.39 -0.02 1.77 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.80 8.02 -2.39 -0.02 1.78 16 34 H 0.08 2.75 7.97 -2.39 -0.02 2.73 16 35 H 0.09 2.74 7.37 -2.39 -0.02 2.72 16 36 H 0.13 3.54 7.45 -2.91 -0.02 3.52 16 37 H 0.16 3.70 7.46 -2.91 -0.02 3.68 16 38 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.24 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 42 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 3.04 6.02 -2.39 -0.01 3.03 16 Total: -1.00 -67.68 363.86 4.38 -63.30 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.99 Total: 15.81 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 6.31 Total: 10.88 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -4.81 Total: -107.90 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.14 Total: -27.63 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.68 4.38 -63.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981588460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.692 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds