Wall clock time and date at job start Tue Mar 31 2020 11:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38393 * 120.01140 * 2 1 4 4 C 1.38248 * 119.76706 * 179.97438 * 3 2 1 5 5 C 1.37971 * 120.34765 * 0.20186 * 4 3 2 6 6 C 1.39242 * 120.24655 * 0.02562 * 5 4 3 7 7 C 1.37690 * 120.01235 * 179.97438 * 2 1 3 8 8 C 1.51646 * 132.17590 * 359.06649 * 7 2 1 9 9 C 1.54699 * 101.93210 * 195.88801 * 8 7 2 10 10 H 1.09006 * 110.90400 * 93.11497 * 9 8 7 11 11 C 1.50703 * 110.74743 * 216.38506 * 9 8 7 12 12 O 1.21283 * 119.99488 * 109.82747 * 11 9 8 13 13 N 1.34777 * 120.00290 * 289.83187 * 11 9 8 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 9 15 15 H 1.08998 * 110.64015 * 323.03197 * 14 13 11 16 16 C 1.55157 * 110.71913 * 199.69875 * 14 13 11 17 17 C 1.54911 * 101.58088 * 277.13992 * 16 14 13 18 18 N 1.47425 * 104.82980 * 322.98734 * 17 16 14 19 19 C 1.36942 * 125.65228 * 204.09388 * 18 17 16 20 20 H 1.07997 * 120.00374 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99531 * 0.04414 * 19 18 17 22 22 N 1.31621 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46826 * 60.00091 * 23 21 19 25 25 H 1.48502 * 109.47292 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47342 * 299.99800 * 23 21 19 27 27 C 1.47019 * 108.70541 * 24.12995 * 18 17 16 28 28 O 1.36126 * 129.90391 * 179.54083 * 6 5 4 29 29 H 1.08998 * 109.47765 * 270.02756 * 1 2 3 30 30 H 1.09003 * 109.47179 * 30.02640 * 1 2 3 31 31 H 1.08998 * 109.46935 * 150.02403 * 1 2 3 32 32 H 1.08003 * 120.11419 * 359.93843 * 3 2 1 33 33 H 1.07994 * 119.82526 * 180.16643 * 4 3 2 34 34 H 1.08005 * 119.87906 * 180.02562 * 5 4 3 35 35 H 1.09004 * 110.94012 * 77.72575 * 8 7 2 36 36 H 1.09003 * 110.93677 * 314.05217 * 8 7 2 37 37 H 0.97001 * 119.99727 * 359.97438 * 13 11 9 38 38 H 1.09000 * 111.00424 * 35.21091 * 16 14 13 39 39 H 1.09001 * 111.00572 * 159.06246 * 16 14 13 40 40 H 1.08998 * 110.36337 * 204.15453 * 17 16 14 41 41 H 1.08993 * 110.36879 * 81.82448 * 17 16 14 42 42 H 0.97001 * 120.00171 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.88539 * 239.52057 * 27 18 17 44 44 H 1.09002 * 109.88449 * 118.35689 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2736 -0.0011 -0.0031 6 6 3.5848 -1.2112 -0.0079 7 6 2.1957 -1.1923 0.0005 8 6 1.7319 -2.6360 0.0195 9 6 3.0258 -3.3823 0.4221 10 1 3.0728 -3.5245 1.5018 11 6 3.1237 -4.7051 -0.2933 12 8 3.9563 -4.8652 -1.1606 13 7 2.2860 -5.7100 0.0305 14 6 2.3853 -6.9978 -0.6608 15 1 2.6293 -6.8513 -1.7130 16 6 1.0705 -7.8068 -0.5057 17 6 1.2704 -8.4618 0.8838 18 7 2.7062 -8.7912 0.9426 19 6 3.2709 -9.7618 1.7264 20 1 4.3380 -9.9260 1.6978 21 6 2.4718 -10.5349 2.5573 22 7 1.1712 -10.3355 2.5916 23 14 3.2420 -11.8594 3.6260 24 1 4.2262 -11.2400 4.5494 25 1 2.1821 -12.5373 4.4150 26 1 3.9298 -12.8535 2.7635 27 6 3.4315 -7.9045 0.0212 28 8 4.0603 -2.4867 -0.0204 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6612 2.1349 -0.0010 33 1 4.1227 2.1271 0.0033 34 1 5.3537 0.0031 -0.0023 35 1 1.3927 -2.9492 -0.9679 36 1 0.9492 -2.7839 0.7636 37 1 1.6204 -5.5820 0.7243 38 1 0.2032 -7.1466 -0.5053 39 1 0.9830 -8.5635 -1.2854 40 1 0.6697 -9.3676 0.9661 41 1 1.0096 -7.7594 1.6753 42 1 0.6129 -10.8755 3.1726 43 1 3.9540 -8.4973 -0.7296 44 1 4.1441 -7.2951 0.5770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016005166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:03 Heat of formation + Delta-G solvation = -11.605180 kcal Electronic energy + Delta-G solvation = -26035.632155 eV Core-core repulsion = 22340.094764 eV Total energy + Delta-G solvation = -3695.537391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57380 -39.51081 -37.89069 -37.02926 -34.02818 -33.56158 -32.04061 -31.31088 -30.02877 -29.10254 -27.41141 -26.86335 -24.84099 -24.14845 -22.35463 -21.12550 -20.86873 -20.25122 -19.87147 -17.76493 -17.41785 -16.86658 -16.77189 -16.27347 -15.78394 -14.88700 -14.72967 -14.66542 -14.05086 -13.97234 -13.89208 -13.74157 -13.45364 -13.25439 -13.03704 -12.75799 -12.63505 -12.49826 -12.14251 -11.96262 -11.77769 -11.65977 -11.27329 -11.10336 -11.01858 -10.89944 -10.81387 -10.44981 -10.17713 -9.94530 -9.69222 -9.58766 -8.93550 -8.83378 -8.66113 -8.34050 -6.87720 -5.69568 -3.10528 1.02800 1.12996 2.49165 2.75351 3.35857 3.39256 3.43364 3.44654 3.60132 4.11391 4.29153 4.46726 4.53477 4.67698 4.70858 4.85310 4.93910 5.06038 5.16397 5.26942 5.29556 5.34828 5.39759 5.42597 5.45326 5.50072 5.54762 5.69584 5.80450 5.85828 6.09016 6.16302 6.19370 6.28421 6.29368 6.37003 6.42826 6.47341 6.69187 6.93637 7.00340 7.37347 7.57929 7.64749 7.78651 8.28581 8.32796 9.18644 9.79096 10.43094 11.34722 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.002644 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.966891 B =10586.780040 C =10788.628449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.154 4.154 4 C -0.081 4.081 5 C -0.144 4.144 6 C 0.114 3.886 7 C -0.175 4.175 8 C -0.095 4.095 9 C 0.064 3.936 10 H 0.114 0.886 11 C 0.518 3.482 12 O -0.521 6.521 13 N -0.703 5.703 14 C 0.132 3.868 15 H 0.089 0.911 16 C -0.152 4.152 17 C 0.151 3.849 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.925 5.925 23 Si 0.915 3.085 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.126 3.874 28 O -0.273 6.273 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.011 0.989 42 H 0.252 0.748 43 H 0.033 0.967 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 22.265 -4.753 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.172 4.172 4 C -0.099 4.099 5 C -0.162 4.162 6 C 0.068 3.932 7 C -0.176 4.176 8 C -0.132 4.132 9 C 0.004 3.996 10 H 0.131 0.869 11 C 0.301 3.699 12 O -0.396 6.396 13 N -0.355 5.355 14 C 0.028 3.972 15 H 0.107 0.893 16 C -0.191 4.191 17 C 0.026 3.974 18 N -0.330 5.330 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.574 5.574 23 Si 0.746 3.254 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.000 4.000 28 O -0.186 6.186 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.845 21.863 -5.300 22.675 hybrid contribution 0.104 -0.613 1.059 1.228 sum -2.741 21.250 -4.241 21.841 Atomic orbital electron populations 1.20818 0.90876 1.03038 1.02638 1.19108 0.96000 0.91052 0.97291 1.20918 0.94135 0.97139 1.04984 1.20845 0.94165 0.96987 0.97856 1.20253 1.00403 0.88801 1.06787 1.19633 0.91982 0.85806 0.95787 1.20526 0.93568 0.94772 1.08724 1.21691 0.96970 0.90398 1.04168 1.23238 0.86758 0.89616 0.99950 0.86856 1.19871 0.81853 0.84535 0.83591 1.90740 1.35061 1.82286 1.31525 1.45854 1.36446 1.12416 1.40804 1.22047 0.97881 0.81350 0.95918 0.89302 1.23347 0.94532 0.98752 1.02488 1.21961 0.86720 0.99823 0.88877 1.44508 1.02735 1.38376 1.47357 1.19052 0.92194 1.08186 1.15479 0.90545 1.24767 0.95690 1.00051 1.00168 1.69759 1.02962 1.42543 1.42102 0.86135 0.77778 0.81433 0.80063 1.21250 1.21566 1.21123 1.21695 0.93665 0.91713 0.92967 1.86968 1.36814 1.12954 1.81828 0.90764 0.91264 0.91337 0.85518 0.85116 0.85324 0.88601 0.88021 0.76387 0.91632 0.90422 0.87325 0.97147 0.93692 0.94933 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.91 36.00 0.36 -0.44 16 2 C -0.03 -0.32 5.87 -104.77 -0.61 -0.94 16 3 C -0.15 -1.30 9.73 -39.52 -0.38 -1.68 16 4 C -0.08 -0.70 10.02 -39.68 -0.40 -1.10 16 5 C -0.14 -1.57 10.06 -39.31 -0.40 -1.96 16 6 C 0.11 1.48 7.04 -38.95 -0.27 1.21 16 7 C -0.18 -1.97 6.07 -104.10 -0.63 -2.60 16 8 C -0.09 -0.98 6.16 -26.52 -0.16 -1.14 16 9 C 0.06 0.84 4.05 -26.99 -0.11 0.73 16 10 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 11 C 0.52 8.28 7.12 -10.98 -0.08 8.21 16 12 O -0.52 -10.51 16.30 -13.50 -0.22 -10.73 16 13 N -0.70 -10.62 5.11 -52.03 -0.27 -10.88 16 14 C 0.13 2.32 3.25 -66.10 -0.21 2.11 16 15 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 16 C -0.15 -2.63 6.64 -24.58 -0.16 -2.79 16 17 C 0.15 3.42 5.87 -2.53 -0.01 3.41 16 18 N -0.60 -15.17 3.39 -170.08 -0.58 -15.74 16 19 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 23 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 C 0.13 2.74 6.98 -3.06 -0.02 2.72 16 28 O -0.27 -4.20 10.39 -39.19 -0.41 -4.61 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.10 1.00 7.92 -51.93 -0.41 0.59 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 5.20 8.62 -40.82 -0.35 4.84 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.11 2.81 5.87 -51.93 -0.30 2.51 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -33.41 362.00 -10.32 -43.73 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.48 Total: 2.51 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.36 Total: -0.98 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.28 Total: -52.30 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.63 Total: -15.34 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.41 -10.32 -43.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016005166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.122 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds