Wall clock time and date at job start Tue Mar 31 2020 11:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38393 * 120.01140 * 2 1 4 4 C 1.38248 * 119.76706 * 179.97438 * 3 2 1 5 5 C 1.37971 * 120.34765 * 0.20186 * 4 3 2 6 6 C 1.39242 * 120.24655 * 0.02562 * 5 4 3 7 7 C 1.37690 * 120.01235 * 179.97438 * 2 1 3 8 8 C 1.51646 * 132.17590 * 359.06649 * 7 2 1 9 9 C 1.54699 * 101.93210 * 195.88801 * 8 7 2 10 10 H 1.09006 * 110.90400 * 93.11497 * 9 8 7 11 11 C 1.50703 * 110.74743 * 216.38506 * 9 8 7 12 12 O 1.21283 * 119.99488 * 109.82747 * 11 9 8 13 13 N 1.34777 * 120.00290 * 289.83187 * 11 9 8 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 9 15 15 H 1.08998 * 110.64015 * 323.03197 * 14 13 11 16 16 C 1.55157 * 110.71913 * 199.69875 * 14 13 11 17 17 C 1.54911 * 101.58088 * 277.13992 * 16 14 13 18 18 N 1.47425 * 104.82980 * 322.98734 * 17 16 14 19 19 C 1.36942 * 125.65228 * 204.09388 * 18 17 16 20 20 H 1.07997 * 120.00374 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99531 * 0.04414 * 19 18 17 22 22 N 1.31621 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46826 * 60.00091 * 23 21 19 25 25 H 1.48502 * 109.47292 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47342 * 299.99800 * 23 21 19 27 27 C 1.47019 * 108.70541 * 24.12995 * 18 17 16 28 28 O 1.36126 * 129.90391 * 179.54083 * 6 5 4 29 29 H 1.08998 * 109.47765 * 270.02756 * 1 2 3 30 30 H 1.09003 * 109.47179 * 30.02640 * 1 2 3 31 31 H 1.08998 * 109.46935 * 150.02403 * 1 2 3 32 32 H 1.08003 * 120.11419 * 359.93843 * 3 2 1 33 33 H 1.07994 * 119.82526 * 180.16643 * 4 3 2 34 34 H 1.08005 * 119.87906 * 180.02562 * 5 4 3 35 35 H 1.09004 * 110.94012 * 77.72575 * 8 7 2 36 36 H 1.09003 * 110.93677 * 314.05217 * 8 7 2 37 37 H 0.97001 * 119.99727 * 359.97438 * 13 11 9 38 38 H 1.09000 * 111.00424 * 35.21091 * 16 14 13 39 39 H 1.09001 * 111.00572 * 159.06246 * 16 14 13 40 40 H 1.08998 * 110.36337 * 204.15453 * 17 16 14 41 41 H 1.08993 * 110.36879 * 81.82448 * 17 16 14 42 42 H 0.97001 * 120.00171 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.88539 * 239.52057 * 27 18 17 44 44 H 1.09002 * 109.88449 * 118.35689 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2736 -0.0011 -0.0031 6 6 3.5848 -1.2112 -0.0079 7 6 2.1957 -1.1923 0.0005 8 6 1.7319 -2.6360 0.0195 9 6 3.0258 -3.3823 0.4221 10 1 3.0728 -3.5245 1.5018 11 6 3.1237 -4.7051 -0.2933 12 8 3.9563 -4.8652 -1.1606 13 7 2.2860 -5.7100 0.0305 14 6 2.3853 -6.9978 -0.6608 15 1 2.6293 -6.8513 -1.7130 16 6 1.0705 -7.8068 -0.5057 17 6 1.2704 -8.4618 0.8838 18 7 2.7062 -8.7912 0.9426 19 6 3.2709 -9.7618 1.7264 20 1 4.3380 -9.9260 1.6978 21 6 2.4718 -10.5349 2.5573 22 7 1.1712 -10.3355 2.5916 23 14 3.2420 -11.8594 3.6260 24 1 4.2262 -11.2400 4.5494 25 1 2.1821 -12.5373 4.4150 26 1 3.9298 -12.8535 2.7635 27 6 3.4315 -7.9045 0.0212 28 8 4.0603 -2.4867 -0.0204 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6612 2.1349 -0.0010 33 1 4.1227 2.1271 0.0033 34 1 5.3537 0.0031 -0.0023 35 1 1.3927 -2.9492 -0.9679 36 1 0.9492 -2.7839 0.7636 37 1 1.6204 -5.5820 0.7243 38 1 0.2032 -7.1466 -0.5053 39 1 0.9830 -8.5635 -1.2854 40 1 0.6697 -9.3676 0.9661 41 1 1.0096 -7.7594 1.6753 42 1 0.6129 -10.8755 3.1726 43 1 3.9540 -8.4973 -0.7296 44 1 4.1441 -7.2951 0.5770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016005166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:01 Heat of formation + Delta-G solvation = -31.977299 kcal Electronic energy + Delta-G solvation = -26036.515556 eV Core-core repulsion = 22340.094764 eV Total energy + Delta-G solvation = -3696.420792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.49815 -40.79935 -39.04589 -38.34318 -35.60422 -34.45772 -33.66298 -32.22536 -31.25767 -30.57461 -28.93038 -27.65133 -26.54334 -25.32753 -23.16232 -22.21663 -21.99681 -21.84361 -21.36478 -19.10052 -18.70428 -18.26879 -17.67487 -17.46930 -16.86835 -16.64139 -16.03606 -15.92267 -15.59930 -15.12835 -14.70740 -14.67324 -14.60311 -14.29161 -14.27427 -13.88526 -13.83207 -13.48490 -13.40320 -13.18026 -13.03289 -12.86586 -12.78802 -12.40411 -12.37262 -12.16170 -12.06731 -12.02884 -11.84720 -11.75299 -11.48461 -10.96536 -10.75502 -10.21356 -9.63997 -9.15680 -8.90363 -7.79249 -5.22801 0.30269 0.36791 1.30661 1.46407 1.48460 1.55035 1.61569 2.44370 2.48777 2.74212 3.23238 3.30559 3.37284 3.64975 3.73077 3.77395 3.84153 3.94812 4.04922 4.11441 4.24318 4.27958 4.44736 4.50342 4.60674 4.63730 4.67431 4.71977 4.84509 4.87486 4.88066 4.94045 4.95538 5.04457 5.28478 5.35724 5.41996 5.45579 5.48693 5.59341 5.63441 5.67318 5.80484 6.16481 6.31611 6.41957 7.05492 7.11609 7.76183 8.38939 9.21787 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.002644 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.966891 B =10586.780040 C =10788.628449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 C -0.150 4.150 4 C -0.079 4.079 5 C -0.160 4.160 6 C 0.073 3.927 7 C -0.185 4.185 8 C -0.085 4.085 9 C 0.065 3.935 10 H 0.130 0.870 11 C 0.519 3.481 12 O -0.568 6.568 13 N -0.692 5.692 14 C 0.146 3.854 15 H 0.097 0.903 16 C -0.129 4.129 17 C 0.152 3.848 18 N -0.622 5.622 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.977 3.023 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.280 1.280 27 C 0.124 3.876 28 O -0.309 6.309 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.415 0.585 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.001 0.999 42 H 0.249 0.751 43 H 0.026 0.974 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 24.355 -4.648 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.168 4.168 4 C -0.096 4.096 5 C -0.179 4.179 6 C 0.029 3.971 7 C -0.186 4.186 8 C -0.122 4.122 9 C 0.005 3.995 10 H 0.148 0.852 11 C 0.305 3.695 12 O -0.447 6.447 13 N -0.344 5.344 14 C 0.041 3.959 15 H 0.115 0.885 16 C -0.168 4.168 17 C 0.028 3.972 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.252 4.252 22 N -0.591 5.591 23 Si 0.806 3.194 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.206 1.206 27 C -0.002 4.002 28 O -0.223 6.223 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -4.581 23.981 -5.188 24.960 hybrid contribution 0.680 -1.178 1.027 1.704 sum -3.901 22.803 -4.161 23.506 Atomic orbital electron populations 1.20880 0.88816 1.03935 1.03599 1.19511 0.97577 0.90622 0.96340 1.21367 0.94172 0.98115 1.03141 1.21225 0.94713 0.97168 0.96543 1.20547 1.00865 0.89188 1.07307 1.20014 0.93372 0.85366 0.98367 1.20715 0.92906 0.95763 1.09191 1.21695 0.96055 0.89493 1.04938 1.23290 0.88097 0.87966 1.00113 0.85232 1.20429 0.80713 0.85521 0.82818 1.90712 1.36953 1.83258 1.33749 1.45703 1.36558 1.11358 1.40791 1.21790 0.96573 0.81620 0.95934 0.88500 1.23184 0.95687 0.98978 0.98965 1.21812 0.84968 0.98592 0.91837 1.44766 1.04188 1.38431 1.47466 1.19329 0.92317 1.09305 1.16385 0.91165 1.25522 0.96283 1.01979 1.01399 1.69987 1.03734 1.43069 1.42355 0.85177 0.76966 0.78924 0.78379 1.20873 1.21412 1.20580 1.21778 0.94484 0.91727 0.92236 1.86903 1.38244 1.14425 1.82728 0.89627 0.89686 0.91211 0.82504 0.82216 0.85271 0.88791 0.84928 0.74808 0.87654 0.89862 0.90536 0.98068 0.94095 0.95625 0.97395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.91 71.23 0.71 -0.46 16 2 C -0.04 -0.65 5.87 -19.96 -0.12 -0.77 16 3 C -0.15 -2.08 9.73 22.31 0.22 -1.86 16 4 C -0.08 -1.20 10.02 22.21 0.22 -0.98 16 5 C -0.16 -3.46 10.06 22.45 0.23 -3.24 16 6 C 0.07 1.92 7.04 22.68 0.16 2.08 16 7 C -0.18 -3.91 6.07 -19.53 -0.12 -4.03 16 8 C -0.08 -1.60 6.16 30.73 0.19 -1.41 16 9 C 0.06 1.66 4.05 30.43 0.12 1.79 16 10 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 11 C 0.52 16.60 7.12 87.66 0.62 17.22 16 12 O -0.57 -23.50 16.30 15.18 0.25 -23.25 16 13 N -0.69 -20.18 5.11 -436.91 -2.23 -22.41 16 14 C 0.15 5.00 3.25 46.18 0.15 5.15 16 15 H 0.10 3.25 7.70 -2.39 -0.02 3.23 16 16 C -0.13 -4.23 6.64 31.99 0.21 -4.02 16 17 C 0.15 6.90 5.87 86.86 0.51 7.41 16 18 N -0.62 -31.79 3.39 -692.00 -2.35 -34.14 16 19 C -0.24 -13.84 10.27 84.03 0.86 -12.98 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 22 N -0.94 -54.05 10.09 21.65 0.22 -53.83 16 23 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 C 0.12 5.48 6.98 86.73 0.61 6.08 16 28 O -0.31 -9.83 10.39 -76.77 -0.80 -10.63 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 31 H 0.07 0.70 7.79 -2.39 -0.02 0.68 16 32 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.09 1.81 7.92 -2.39 -0.02 1.79 16 36 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 9.96 8.62 -92.71 -0.80 9.16 16 38 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.08 4.01 5.87 -2.39 -0.01 4.00 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.01 0.38 8.04 -2.39 -0.02 0.36 16 Total: -1.00 -75.23 362.00 2.36 -72.86 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.21 Total: 16.76 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.04 Total: 7.15 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.37 Total: -110.39 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.55 Total: -33.88 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.23 2.36 -72.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016005166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.887 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds