Wall clock time and date at job start Tue Mar 31 2020 11:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37974 * 119.88388 * 2 1 4 4 C 1.38248 * 120.34758 * 180.02562 * 3 2 1 5 5 C 1.38391 * 119.77115 * 0.19884 * 4 3 2 6 6 C 1.37692 * 119.97678 * 0.02562 * 5 4 3 7 7 C 1.38928 * 120.78848 * 359.58485 * 6 5 4 8 8 O 1.36132 * 111.23124 * 180.66033 * 7 6 5 9 9 C 1.43773 * 109.23468 * 340.93999 * 8 7 6 10 10 H 1.09002 * 110.74876 * 146.09255 * 9 8 7 11 11 C 1.50698 * 110.74788 * 269.25943 * 9 8 7 12 12 O 1.21278 * 120.00119 * 1.08069 * 11 9 8 13 13 N 1.34778 * 120.00181 * 181.08744 * 11 9 8 14 14 C 1.47426 * 125.64655 * 0.02562 * 13 11 9 15 15 C 1.54913 * 104.83188 * 204.09422 * 14 13 11 16 16 C 1.55153 * 101.58078 * 322.99048 * 15 14 13 17 17 H 1.08999 * 110.72830 * 277.14016 * 16 15 14 18 18 N 1.46499 * 110.71692 * 154.04178 * 16 15 14 19 19 C 1.36937 * 120.00150 * 86.45508 * 18 16 15 20 20 H 1.08001 * 119.99730 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00266 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99794 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47113 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46674 * 120.00264 * 23 21 19 26 26 H 1.48500 * 109.47193 * 240.00391 * 23 21 19 27 27 C 1.47019 * 125.64700 * 179.71611 * 13 11 9 28 28 C 1.51942 * 132.11752 * 178.80521 * 6 5 4 29 29 H 1.08996 * 109.47085 * 269.98215 * 1 2 3 30 30 H 1.08999 * 109.46898 * 29.97288 * 1 2 3 31 31 H 1.09000 * 109.47340 * 149.97777 * 1 2 3 32 32 H 1.07998 * 119.82451 * 0.04559 * 3 2 1 33 33 H 1.08010 * 120.10989 * 180.22150 * 4 3 2 34 34 H 1.07999 * 120.00896 * 180.02562 * 5 4 3 35 35 H 1.08996 * 110.36602 * 322.93696 * 14 13 11 36 36 H 1.09000 * 110.36298 * 85.14730 * 14 13 11 37 37 H 1.08993 * 111.00056 * 81.06924 * 15 14 13 38 38 H 1.09001 * 110.99652 * 204.88123 * 15 14 13 39 39 H 0.97000 * 120.00078 * 266.45672 * 18 16 15 40 40 H 0.96991 * 120.00085 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.88355 * 298.38571 * 27 13 11 42 42 H 1.08992 * 109.88431 * 59.56031 * 27 13 11 43 43 H 1.09000 * 110.89254 * 77.75592 * 28 6 5 44 44 H 1.09000 * 111.10219 * 313.99070 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5769 1.2075 -0.0005 5 6 4.2737 0.0118 -0.0052 6 6 3.5897 -1.1831 -0.0099 7 6 2.2006 -1.2074 -0.0013 8 8 1.7300 -2.4848 0.0067 9 6 2.7674 -3.3746 -0.4394 10 1 2.7008 -4.3337 0.0743 11 6 2.7014 -3.5654 -1.9328 12 8 1.8594 -2.9821 -2.5821 13 7 3.5782 -4.3844 -2.5469 14 6 4.6472 -5.1521 -1.8827 15 6 5.7026 -5.4012 -2.9890 16 6 4.8028 -5.6299 -4.2320 17 1 4.4515 -6.6610 -4.2696 18 7 5.5199 -5.2835 -5.4617 19 6 6.3103 -6.2158 -6.0791 20 1 6.4047 -7.2066 -5.6597 21 6 6.9894 -5.8878 -7.2445 22 7 6.8739 -4.6805 -7.7559 23 14 8.0682 -7.1594 -8.0862 24 1 8.0295 -8.4288 -7.3166 25 1 7.5668 -7.4003 -9.4631 26 1 9.4653 -6.6601 -8.1484 27 6 3.6227 -4.6651 -3.9894 28 6 4.0614 -2.6272 -0.0391 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6497 2.1288 0.0007 33 1 4.1111 2.1462 0.0031 34 1 5.3537 0.0161 -0.0053 35 1 5.0809 -4.5718 -1.0683 36 1 4.2576 -6.0985 -1.5076 37 1 6.3407 -4.5279 -3.1238 38 1 6.2979 -6.2873 -2.7685 39 1 5.4348 -4.3938 -5.8385 40 1 7.3487 -4.4512 -8.5699 41 1 2.6893 -5.1312 -4.3054 42 1 3.7832 -3.7397 -4.5424 43 1 4.4053 -2.9437 0.9456 44 1 4.8412 -2.7703 -0.7871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019901608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:46 Heat of formation + Delta-G solvation = -19.638178 kcal Electronic energy + Delta-G solvation = -26319.654331 eV Core-core repulsion = 22623.768603 eV Total energy + Delta-G solvation = -3695.885728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.67545 -39.54886 -37.83267 -36.97240 -34.32143 -33.68077 -31.83174 -31.11845 -29.94981 -29.57815 -27.64857 -26.91030 -24.89097 -23.48322 -22.68880 -22.25118 -21.04897 -20.18280 -19.59679 -17.73435 -17.38803 -17.15746 -16.70974 -16.17521 -15.58873 -15.31596 -14.77095 -14.65625 -14.11802 -13.82863 -13.73936 -13.57903 -13.35162 -13.32763 -13.13147 -12.90357 -12.56252 -12.42240 -12.37934 -12.09537 -11.82464 -11.64086 -11.58791 -11.54883 -11.22714 -10.95749 -10.89297 -10.76284 -10.39621 -10.10181 -9.83179 -9.73361 -9.02299 -8.83115 -8.51658 -8.20857 -7.09514 -5.86355 -3.17504 1.12737 1.22164 2.52222 2.76172 3.23509 3.37688 3.43295 3.45790 3.56137 4.14018 4.22271 4.34545 4.50340 4.62869 4.79675 4.91579 4.93434 5.03767 5.12486 5.15765 5.24095 5.31373 5.35839 5.39557 5.48332 5.51135 5.54456 5.56891 5.69014 5.74361 5.88205 6.07165 6.07690 6.17271 6.19963 6.26022 6.28863 6.35012 6.41428 6.49598 6.52764 6.83277 7.01406 7.56938 7.61501 8.15940 8.30735 9.42348 9.96151 10.30663 11.35819 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002812 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.550636 B = 9953.561530 C =10231.956485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.089 4.089 4 C -0.145 4.145 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.112 3.888 8 O -0.273 6.273 9 C 0.069 3.931 10 H 0.140 0.860 11 C 0.509 3.491 12 O -0.524 6.524 13 N -0.608 5.608 14 C 0.089 3.911 15 C -0.153 4.153 16 C 0.172 3.828 17 H 0.065 0.935 18 N -0.716 5.716 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.101 3.899 28 C -0.101 4.101 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 6.888 20.783 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.163 4.163 5 C -0.092 4.092 6 C -0.171 4.171 7 C 0.067 3.933 8 O -0.185 6.185 9 C 0.009 3.991 10 H 0.157 0.843 11 C 0.295 3.705 12 O -0.400 6.400 13 N -0.343 5.343 14 C -0.034 4.034 15 C -0.195 4.195 16 C 0.061 3.939 17 H 0.082 0.918 18 N -0.356 5.356 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.021 4.021 28 C -0.138 4.138 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.641 7.013 20.429 22.911 hybrid contribution 0.886 -0.474 -0.709 1.230 sum -6.755 6.540 19.720 21.846 Atomic orbital electron populations 1.20687 0.90618 1.03218 1.02073 1.19139 0.96484 0.89493 1.04783 1.20787 0.94241 0.96513 0.99183 1.21010 0.94107 0.97740 1.03428 1.20279 0.99862 0.90481 0.98568 1.20756 0.93652 0.95231 1.07489 1.19343 0.91689 0.85389 0.96922 1.86908 1.38100 1.13571 1.79940 1.23252 0.87106 0.95847 0.92922 0.84286 1.20407 0.81244 0.79332 0.89492 1.90740 1.35970 1.46973 1.66271 1.48433 1.31968 1.44491 1.09439 1.22601 0.88493 0.95443 0.96880 1.23561 0.97448 1.02745 0.95727 1.21169 0.89361 0.96011 0.87400 0.91759 1.42365 1.54073 1.14441 1.24764 1.19243 1.20003 0.93656 1.04718 0.90873 1.24786 1.00843 0.96793 0.98226 1.69673 1.46454 1.18776 1.22734 0.86100 0.80082 0.80444 0.79406 1.20465 1.21770 1.21789 1.22322 0.99922 1.00432 0.79461 1.21894 0.97077 0.90802 1.04030 0.91454 0.91493 0.91040 0.85216 0.85415 0.85680 0.91013 0.91248 0.90542 0.90344 0.77937 0.93356 0.91464 0.91045 0.87861 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.98 36.01 0.36 -0.80 16 2 C -0.10 -1.24 5.90 -104.34 -0.62 -1.85 16 3 C -0.09 -0.95 9.66 -39.67 -0.38 -1.33 16 4 C -0.14 -1.48 10.07 -39.52 -0.40 -1.88 16 5 C -0.07 -0.82 10.03 -39.72 -0.40 -1.22 16 6 C -0.17 -2.14 6.27 -103.95 -0.65 -2.79 16 7 C 0.11 1.56 6.57 -38.95 -0.26 1.31 16 8 O -0.27 -3.93 10.29 -39.22 -0.40 -4.34 16 9 C 0.07 0.84 3.45 -26.99 -0.09 0.74 16 10 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 11 C 0.51 8.13 7.10 -10.99 -0.08 8.05 16 12 O -0.52 -10.67 16.82 -13.51 -0.23 -10.90 16 13 N -0.61 -9.10 3.30 -170.51 -0.56 -9.66 16 14 C 0.09 1.04 6.47 -2.53 -0.02 1.03 16 15 C -0.15 -2.33 6.77 -24.58 -0.17 -2.49 16 16 C 0.17 3.18 3.57 -66.09 -0.24 2.94 16 17 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 18 N -0.72 -17.11 5.25 -51.64 -0.27 -17.38 16 19 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 23 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.10 1.78 6.63 -3.05 -0.02 1.76 16 28 C -0.10 -1.04 5.70 -26.37 -0.15 -1.19 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.07 0.66 5.48 -51.93 -0.28 0.38 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.39 10.02 7.53 -40.82 -0.31 9.71 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.06 6.30 -51.93 -0.33 0.73 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -33.42 361.78 -10.01 -43.43 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.35 Total: 8.18 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.35 Total: -4.73 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.11 Total: -53.75 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.63 Total: -15.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.42 -10.01 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019901608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.792 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds