Wall clock time and date at job start Tue Mar 31 2020 11:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37974 * 119.88388 * 2 1 4 4 C 1.38248 * 120.34758 * 180.02562 * 3 2 1 5 5 C 1.38391 * 119.77115 * 0.19884 * 4 3 2 6 6 C 1.37692 * 119.97678 * 0.02562 * 5 4 3 7 7 C 1.38928 * 120.78848 * 359.58485 * 6 5 4 8 8 O 1.36132 * 111.23124 * 180.66033 * 7 6 5 9 9 C 1.43773 * 109.23468 * 340.93999 * 8 7 6 10 10 H 1.09002 * 110.74876 * 146.09255 * 9 8 7 11 11 C 1.50698 * 110.74788 * 269.25943 * 9 8 7 12 12 O 1.21278 * 120.00119 * 1.08069 * 11 9 8 13 13 N 1.34778 * 120.00181 * 181.08744 * 11 9 8 14 14 C 1.47426 * 125.64655 * 0.02562 * 13 11 9 15 15 C 1.54913 * 104.83188 * 204.09422 * 14 13 11 16 16 C 1.55153 * 101.58078 * 322.99048 * 15 14 13 17 17 H 1.08999 * 110.72830 * 277.14016 * 16 15 14 18 18 N 1.46499 * 110.71692 * 154.04178 * 16 15 14 19 19 C 1.36937 * 120.00150 * 86.45508 * 18 16 15 20 20 H 1.08001 * 119.99730 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00266 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99794 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47113 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46674 * 120.00264 * 23 21 19 26 26 H 1.48500 * 109.47193 * 240.00391 * 23 21 19 27 27 C 1.47019 * 125.64700 * 179.71611 * 13 11 9 28 28 C 1.51942 * 132.11752 * 178.80521 * 6 5 4 29 29 H 1.08996 * 109.47085 * 269.98215 * 1 2 3 30 30 H 1.08999 * 109.46898 * 29.97288 * 1 2 3 31 31 H 1.09000 * 109.47340 * 149.97777 * 1 2 3 32 32 H 1.07998 * 119.82451 * 0.04559 * 3 2 1 33 33 H 1.08010 * 120.10989 * 180.22150 * 4 3 2 34 34 H 1.07999 * 120.00896 * 180.02562 * 5 4 3 35 35 H 1.08996 * 110.36602 * 322.93696 * 14 13 11 36 36 H 1.09000 * 110.36298 * 85.14730 * 14 13 11 37 37 H 1.08993 * 111.00056 * 81.06924 * 15 14 13 38 38 H 1.09001 * 110.99652 * 204.88123 * 15 14 13 39 39 H 0.97000 * 120.00078 * 266.45672 * 18 16 15 40 40 H 0.96991 * 120.00085 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.88355 * 298.38571 * 27 13 11 42 42 H 1.08992 * 109.88431 * 59.56031 * 27 13 11 43 43 H 1.09000 * 110.89254 * 77.75592 * 28 6 5 44 44 H 1.09000 * 111.10219 * 313.99070 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5769 1.2075 -0.0005 5 6 4.2737 0.0118 -0.0052 6 6 3.5897 -1.1831 -0.0099 7 6 2.2006 -1.2074 -0.0013 8 8 1.7300 -2.4848 0.0067 9 6 2.7674 -3.3746 -0.4394 10 1 2.7008 -4.3337 0.0743 11 6 2.7014 -3.5654 -1.9328 12 8 1.8594 -2.9821 -2.5821 13 7 3.5782 -4.3844 -2.5469 14 6 4.6472 -5.1521 -1.8827 15 6 5.7026 -5.4012 -2.9890 16 6 4.8028 -5.6299 -4.2320 17 1 4.4515 -6.6610 -4.2696 18 7 5.5199 -5.2835 -5.4617 19 6 6.3103 -6.2158 -6.0791 20 1 6.4047 -7.2066 -5.6597 21 6 6.9894 -5.8878 -7.2445 22 7 6.8739 -4.6805 -7.7559 23 14 8.0682 -7.1594 -8.0862 24 1 8.0295 -8.4288 -7.3166 25 1 7.5668 -7.4003 -9.4631 26 1 9.4653 -6.6601 -8.1484 27 6 3.6227 -4.6651 -3.9894 28 6 4.0614 -2.6272 -0.0391 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6497 2.1288 0.0007 33 1 4.1111 2.1462 0.0031 34 1 5.3537 0.0161 -0.0053 35 1 5.0809 -4.5718 -1.0683 36 1 4.2576 -6.0985 -1.5076 37 1 6.3407 -4.5279 -3.1238 38 1 6.2979 -6.2873 -2.7685 39 1 5.4348 -4.3938 -5.8385 40 1 7.3487 -4.4512 -8.5699 41 1 2.6893 -5.1312 -4.3054 42 1 3.7832 -3.7397 -4.5424 43 1 4.4053 -2.9437 0.9456 44 1 4.8412 -2.7703 -0.7871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019901608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:45 Heat of formation + Delta-G solvation = -40.300198 kcal Electronic energy + Delta-G solvation = -26320.550304 eV Core-core repulsion = 22623.768603 eV Total energy + Delta-G solvation = -3696.781700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62268 -40.74322 -38.92390 -38.16693 -36.00850 -34.62609 -33.41752 -32.13140 -31.20576 -30.75167 -29.08955 -27.73799 -26.17947 -25.15431 -23.81927 -23.13352 -21.90037 -21.62446 -20.76236 -19.34456 -18.76345 -18.11471 -17.69755 -17.46024 -16.63340 -16.55981 -16.20271 -15.87082 -15.38850 -15.30162 -14.84351 -14.72124 -14.50426 -14.32180 -14.22395 -14.02730 -13.78726 -13.48029 -13.33304 -13.23541 -13.11411 -12.99819 -12.76460 -12.61920 -12.47192 -12.41316 -12.33143 -12.07503 -11.80654 -11.73183 -11.67347 -10.98413 -10.95463 -9.78885 -9.65619 -9.11312 -9.05354 -7.95343 -5.25991 0.29126 0.35180 1.34773 1.49177 1.50249 1.59924 1.65621 2.25648 2.56630 2.72169 3.23572 3.29190 3.38621 3.45437 3.72119 3.80969 3.82166 3.98256 4.03796 4.14552 4.24155 4.27022 4.36923 4.39880 4.49046 4.49407 4.56048 4.63435 4.71076 4.73483 4.74768 4.84026 4.94973 4.97239 5.12324 5.24195 5.24948 5.37480 5.43743 5.44221 5.52397 5.54233 5.61379 6.14998 6.24960 6.38847 6.93934 7.31296 8.02819 8.26243 9.28506 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002812 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.550636 B = 9953.561530 C =10231.956485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.145 4.145 5 C -0.086 4.086 6 C -0.187 4.187 7 C 0.074 3.926 8 O -0.292 6.292 9 C 0.072 3.928 10 H 0.181 0.819 11 C 0.503 3.497 12 O -0.581 6.581 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.072 0.928 18 N -0.733 5.733 19 C -0.236 4.236 20 H 0.086 0.914 21 C -0.078 4.078 22 N -0.972 5.972 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.299 1.299 26 H -0.295 1.295 27 C 0.109 3.891 28 C -0.092 4.092 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.142 0.858 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 5.995 23.649 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.163 4.163 5 C -0.104 4.104 6 C -0.187 4.187 7 C 0.030 3.970 8 O -0.205 6.205 9 C 0.012 3.988 10 H 0.198 0.802 11 C 0.291 3.709 12 O -0.461 6.461 13 N -0.338 5.338 14 C -0.026 4.026 15 C -0.184 4.184 16 C 0.056 3.944 17 H 0.090 0.910 18 N -0.372 5.372 19 C -0.367 4.367 20 H 0.104 0.896 21 C -0.270 4.270 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.184 1.184 25 H -0.226 1.226 26 H -0.222 1.222 27 C -0.015 4.015 28 C -0.129 4.129 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.160 0.840 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.542 6.069 23.377 25.022 hybrid contribution 0.472 -0.138 -1.557 1.632 sum -6.069 5.931 21.821 23.413 Atomic orbital electron populations 1.20675 0.90004 1.02699 1.02868 1.19570 0.97448 0.90078 1.05170 1.21150 0.94816 0.96851 0.98473 1.21440 0.94192 0.98768 1.01899 1.20656 1.01076 0.90404 0.98296 1.21148 0.93347 0.96841 1.07402 1.19734 0.92838 0.85597 0.98855 1.86876 1.39405 1.14197 1.80046 1.23523 0.87861 0.97615 0.89773 0.80181 1.21321 0.80168 0.78104 0.91277 1.90709 1.38359 1.49092 1.67891 1.48484 1.32580 1.44535 1.08247 1.22831 0.86441 0.97241 0.96123 1.23356 0.97566 1.02688 0.94814 1.21385 0.89908 0.96251 0.86817 0.91006 1.42564 1.54608 1.13413 1.26621 1.19674 1.18654 0.94238 1.04153 0.89592 1.25611 1.03153 0.98631 0.99565 1.69841 1.48272 1.20938 1.23257 0.85057 0.77796 0.78869 0.77918 1.18380 1.22621 1.22245 1.22009 0.99349 0.98694 0.81436 1.21987 0.95775 0.89204 1.05951 0.89978 0.89949 0.93514 0.82696 0.82679 0.83648 0.87416 0.87813 0.92426 0.88694 0.79777 0.94114 0.92081 0.94174 0.83994 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.98 71.24 0.71 -1.56 16 2 C -0.12 -3.05 5.90 -19.68 -0.12 -3.16 16 3 C -0.10 -1.89 9.66 22.21 0.21 -1.68 16 4 C -0.15 -2.68 10.07 22.31 0.22 -2.46 16 5 C -0.09 -1.76 10.03 22.18 0.22 -1.54 16 6 C -0.19 -4.40 6.27 -19.43 -0.12 -4.52 16 7 C 0.07 2.06 6.57 22.68 0.15 2.21 16 8 O -0.29 -8.30 10.29 -76.82 -0.79 -9.09 16 9 C 0.07 1.58 3.45 30.43 0.10 1.69 16 10 H 0.18 2.38 8.14 -2.39 -0.02 2.36 16 11 C 0.50 15.77 7.10 87.66 0.62 16.39 16 12 O -0.58 -24.57 16.82 15.20 0.26 -24.32 16 13 N -0.60 -17.31 3.30 -811.76 -2.68 -19.99 16 14 C 0.09 1.87 6.47 86.86 0.56 2.43 16 15 C -0.14 -4.01 6.77 31.99 0.22 -3.79 16 16 C 0.17 6.02 3.57 46.19 0.17 6.18 16 17 H 0.07 2.51 8.12 -2.39 -0.02 2.50 16 18 N -0.73 -35.54 5.25 -317.30 -1.67 -37.21 16 19 C -0.24 -12.40 9.98 84.03 0.84 -11.56 16 20 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 22 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 23 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.11 3.91 6.63 86.74 0.58 4.48 16 28 C -0.09 -1.62 5.70 30.83 0.18 -1.45 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 31 H 0.05 1.21 8.01 -2.39 -0.02 1.19 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.11 1.44 5.48 -2.39 -0.01 1.43 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.37 20.05 7.53 -92.71 -0.70 19.35 16 40 H 0.25 14.79 8.31 -92.72 -0.77 14.02 16 41 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.04 1.68 7.70 -2.39 -0.02 1.66 16 43 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.78 6.30 -2.39 -0.02 1.77 16 Total: -1.00 -77.30 361.78 2.76 -74.55 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.32 Total: 30.28 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 5.01 Total: -2.21 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -4.06 Total: -116.04 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.53 Total: -33.40 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -77.30 2.76 -74.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019901608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.245 kcal (2) G-P(sol) polarization free energy of solvation -77.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds