Wall clock time and date at job start Tue Mar 31 2020 11:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38397 * 120.00602 * 2 1 4 4 C 1.38246 * 119.76431 * 180.02562 * 3 2 1 5 5 C 1.37971 * 120.35126 * 359.79617 * 4 3 2 6 6 C 1.39247 * 120.24467 * 0.02562 * 5 4 3 7 7 C 1.37693 * 120.01322 * 179.97438 * 2 1 3 8 8 C 1.51637 * 132.19100 * 0.33852 * 7 2 1 9 9 C 1.54711 * 101.91100 * 164.28749 * 8 7 2 10 10 H 1.09000 * 110.74450 * 143.87533 * 9 8 7 11 11 C 1.50701 * 110.74929 * 267.03927 * 9 8 7 12 12 O 1.21273 * 120.00044 * 112.49136 * 11 9 8 13 13 N 1.34781 * 119.99619 * 292.48884 * 11 9 8 14 14 C 1.46503 * 119.99611 * 180.02562 * 13 11 9 15 15 H 1.09001 * 112.85028 * 336.19481 * 14 13 11 16 16 C 1.53779 * 113.61483 * 107.50299 * 14 13 11 17 17 C 1.53784 * 87.08045 * 139.98067 * 16 14 13 18 18 H 1.08994 * 113.61477 * 89.11454 * 17 16 14 19 19 N 1.46496 * 113.61320 * 220.02163 * 17 16 14 20 20 C 1.36942 * 119.99927 * 252.49586 * 19 17 16 21 21 H 1.08001 * 119.99962 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99989 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00277 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00036 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47101 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47065 * 120.00010 * 24 22 20 27 27 H 1.48498 * 109.47654 * 240.00239 * 24 22 20 28 28 C 1.53779 * 113.61085 * 205.00218 * 14 13 11 29 29 O 1.36569 * 129.82389 * 180.54055 * 6 5 4 30 30 H 1.08998 * 109.46826 * 270.03743 * 1 2 3 31 31 H 1.08994 * 109.47732 * 30.04232 * 1 2 3 32 32 H 1.09002 * 109.46989 * 150.04528 * 1 2 3 33 33 H 1.07994 * 120.12118 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.82537 * 179.81684 * 4 3 2 35 35 H 1.08007 * 119.87924 * 180.02562 * 5 4 3 36 36 H 1.09002 * 110.94136 * 46.13687 * 8 7 2 37 37 H 1.08992 * 110.94599 * 282.44571 * 8 7 2 38 38 H 0.96998 * 120.00342 * 0.02562 * 13 11 9 39 39 H 1.09002 * 113.61557 * 25.43179 * 16 14 13 40 40 H 1.09004 * 113.61501 * 254.52599 * 16 14 13 41 41 H 0.97002 * 120.00490 * 72.49429 * 19 17 16 42 42 H 0.96994 * 120.00158 * 179.97438 * 23 22 20 43 43 H 1.08997 * 113.61646 * 105.47219 * 28 14 13 44 44 H 1.09000 * 113.61527 * 334.56490 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1985 0.0000 4 6 3.5816 1.1926 -0.0005 5 6 4.2737 -0.0009 0.0032 6 6 3.5849 -1.2111 0.0069 7 6 2.1957 -1.1923 0.0005 8 6 1.7323 -2.6361 -0.0055 9 6 3.0243 -3.3845 -0.4107 10 1 3.0965 -4.3396 0.1095 11 6 3.0787 -3.5863 -1.9031 12 8 3.9145 -3.0065 -2.5634 13 7 2.1983 -4.4111 -2.5041 14 6 2.2515 -4.6077 -3.9549 15 1 2.7235 -3.7759 -4.4777 16 6 2.7929 -5.9858 -4.3703 17 6 1.7134 -5.9923 -5.4656 18 1 2.0390 -5.5399 -6.4023 19 7 1.0764 -7.2980 -5.6540 20 6 1.3561 -8.0417 -6.7693 21 1 2.0467 -7.6659 -7.5098 22 6 0.7529 -9.2792 -6.9475 23 7 -0.0882 -9.7375 -6.0449 24 14 1.1340 -10.2934 -8.4692 25 1 2.1028 -9.5602 -9.3231 26 1 1.7203 -11.5956 -8.0621 27 1 -0.1178 -10.5311 -9.2320 28 6 0.9083 -5.0379 -4.5678 29 8 4.0638 -2.4900 0.0208 30 1 -0.3633 0.0007 1.0277 31 1 -0.3634 0.8895 -0.5144 32 1 -0.3633 -0.8904 -0.5131 33 1 1.6612 2.1349 -0.0004 34 1 4.1226 2.1273 -0.0035 35 1 5.3538 0.0035 0.0031 36 1 0.9453 -2.7896 -0.7439 37 1 1.3993 -2.9425 0.9861 38 1 1.5295 -4.8746 -1.9760 39 1 2.6513 -6.7570 -3.6131 40 1 3.8103 -5.9558 -4.7603 41 1 0.4565 -7.6358 -4.9888 42 1 -0.5100 -10.6020 -6.1696 43 1 0.4044 -4.2428 -5.1171 44 1 0.2515 -5.5500 -3.8646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022981237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:50 Heat of formation + Delta-G solvation = -10.821480 kcal Electronic energy + Delta-G solvation = -25635.375819 eV Core-core repulsion = 21939.872412 eV Total energy + Delta-G solvation = -3695.503407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.71923 -39.64251 -38.22161 -37.37222 -34.26057 -33.66337 -32.78129 -31.44749 -30.21093 -29.57339 -27.06760 -25.19879 -25.17425 -24.10887 -22.55127 -21.99191 -21.23744 -20.52131 -19.44060 -17.91153 -17.23884 -17.04166 -16.97568 -16.07388 -15.96554 -15.37730 -14.68654 -14.54915 -14.49781 -14.03700 -14.03276 -13.89474 -13.33519 -13.13823 -13.07272 -12.95382 -12.78128 -12.60748 -12.26225 -11.97200 -11.86686 -11.80691 -11.63098 -11.29877 -11.07293 -10.96814 -10.67949 -10.53119 -10.37477 -10.06303 -9.81182 -9.63183 -8.96637 -8.93323 -8.83278 -8.34866 -7.02380 -5.83807 -3.12723 1.02871 1.11914 2.43261 2.78179 3.22931 3.40041 3.46431 3.47647 3.48298 4.05205 4.15678 4.48508 4.50132 4.56538 4.68913 4.82007 4.92899 4.98820 5.06257 5.15983 5.18208 5.20240 5.28950 5.32399 5.35909 5.43423 5.43764 5.51546 5.81864 5.84313 5.88780 6.06318 6.07831 6.15536 6.19951 6.25707 6.28150 6.32534 6.43038 6.57217 6.68079 6.90815 7.01146 7.49170 7.66458 8.14995 8.34714 9.46306 10.02325 10.36894 11.38642 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.002320 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.738731 B =12065.356132 C =12362.531586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.151 4.151 4 C -0.082 4.082 5 C -0.139 4.139 6 C 0.116 3.884 7 C -0.175 4.175 8 C -0.096 4.096 9 C 0.062 3.938 10 H 0.142 0.858 11 C 0.496 3.504 12 O -0.523 6.523 13 N -0.708 5.708 14 C 0.118 3.882 15 H 0.109 0.891 16 C -0.176 4.176 17 C 0.169 3.831 18 H 0.080 0.920 19 N -0.710 5.710 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.158 4.158 29 O -0.274 6.274 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.400 0.600 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.067 0.933 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 20.450 16.885 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 C -0.170 4.170 4 C -0.100 4.100 5 C -0.157 4.157 6 C 0.071 3.929 7 C -0.176 4.176 8 C -0.134 4.134 9 C 0.001 3.999 10 H 0.159 0.841 11 C 0.280 3.720 12 O -0.398 6.398 13 N -0.360 5.360 14 C 0.013 3.987 15 H 0.127 0.873 16 C -0.218 4.218 17 C 0.056 3.944 18 H 0.098 0.902 19 N -0.348 5.348 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.198 4.198 29 O -0.187 6.187 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.234 0.766 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.467 20.681 16.262 26.424 hybrid contribution -0.359 -1.118 -0.304 1.213 sum 2.108 19.563 15.958 25.334 Atomic orbital electron populations 1.20811 0.90877 1.03130 1.02479 1.19095 0.95982 0.91088 0.97409 1.20925 0.94147 0.97168 1.04722 1.20854 0.94180 0.97036 0.97892 1.20264 1.00390 0.88940 1.06125 1.19632 0.91815 0.85734 0.95701 1.20479 0.93536 0.94809 1.08771 1.21739 0.96855 0.90775 1.03985 1.23357 0.87107 0.95969 0.93429 0.84088 1.20785 0.81871 0.79649 0.89686 1.90731 1.36084 1.47514 1.65495 1.45993 1.34473 1.46308 1.09243 1.22537 0.98934 0.98660 0.78537 0.87320 1.24346 1.00978 0.95105 1.01417 1.21341 0.91537 0.87144 0.94345 0.90189 1.42358 1.51828 1.15672 1.24919 1.19363 1.21229 0.98497 0.98392 0.90921 1.24769 0.99519 0.97990 0.98618 1.69663 1.32910 1.20246 1.35280 0.86105 0.77436 0.80189 0.82393 1.20462 1.21825 1.21811 1.23869 0.95911 1.00093 0.99916 1.87056 1.37563 1.13478 1.80576 0.90869 0.91224 0.91374 0.85503 0.85119 0.85404 0.88438 0.87903 0.76564 0.90119 0.92185 0.78091 0.93484 0.91455 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.91 36.01 0.36 -0.44 16 2 C -0.04 -0.34 5.87 -104.76 -0.61 -0.95 16 3 C -0.15 -1.34 9.73 -39.52 -0.38 -1.72 16 4 C -0.08 -0.75 10.02 -39.68 -0.40 -1.14 16 5 C -0.14 -1.56 10.06 -39.30 -0.40 -1.95 16 6 C 0.12 1.48 6.88 -38.95 -0.27 1.21 16 7 C -0.18 -1.91 6.06 -104.10 -0.63 -2.54 16 8 C -0.10 -0.82 6.20 -26.52 -0.16 -0.98 16 9 C 0.06 0.65 4.10 -26.98 -0.11 0.54 16 10 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 11 C 0.50 6.86 7.05 -10.98 -0.08 6.78 16 12 O -0.52 -9.64 16.10 -13.49 -0.22 -9.86 16 13 N -0.71 -8.66 5.28 -53.02 -0.28 -8.94 16 14 C 0.12 1.73 4.24 -67.12 -0.28 1.45 16 15 H 0.11 1.72 7.46 -51.93 -0.39 1.33 16 16 C -0.18 -3.03 7.68 -25.92 -0.20 -3.23 16 17 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 18 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 19 N -0.71 -17.20 5.40 -52.64 -0.28 -17.48 16 20 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C -0.16 -2.39 7.58 -25.92 -0.20 -2.59 16 29 O -0.27 -3.70 10.45 -40.64 -0.42 -4.13 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.07 0.46 7.57 -51.93 -0.39 0.06 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.10 0.73 7.61 -51.93 -0.39 0.34 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 3.72 8.73 -40.82 -0.36 3.37 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.39 9.79 7.92 -40.82 -0.32 9.46 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -34.23 369.22 -10.32 -44.55 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.47 Total: 9.96 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.91 Total: -9.91 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.16 Total: -53.28 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.64 Total: -13.98 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.23 -10.32 -44.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022981237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.730 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds