Wall clock time and date at job start Tue Mar 31 2020 11:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48507 * 109.47367 * 269.99952 * 3 2 1 5 5 H 1.48503 * 109.47350 * 30.00267 * 3 2 1 6 6 H 1.48498 * 109.47386 * 149.99998 * 3 2 1 7 7 C 1.38810 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99921 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00157 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.03891 * 33.83960 * 10 9 7 12 12 C 1.53703 * 109.90456 * 272.68356 * 10 9 7 13 13 C 1.55356 * 107.06479 * 241.20632 * 12 10 9 14 14 C 1.54488 * 104.21834 * 337.73789 * 13 12 10 15 15 H 1.09006 * 113.37237 * 271.17969 * 14 13 12 16 16 C 1.54113 * 108.73176 * 144.08306 * 14 13 12 17 17 N 1.47075 * 107.52526 * 271.53909 * 16 14 13 18 18 C 1.34773 * 125.70344 * 181.97583 * 17 16 14 19 19 O 1.21780 * 119.99619 * 180.02562 * 18 17 16 20 20 C 1.41550 * 120.00333 * 0.02562 * 18 17 16 21 21 C 1.35628 * 120.00133 * 186.35510 * 20 18 17 22 22 C 1.41620 * 119.99852 * 8.85953 * 21 20 18 23 23 C 1.37943 * 126.10353 * 219.76540 * 22 21 20 24 24 C 1.40312 * 106.52876 * 179.91032 * 23 22 21 25 25 C 1.35153 * 107.20460 * 0.34802 * 24 23 22 26 26 O 1.34024 * 109.03337 * 359.77997 * 25 24 23 27 27 C 1.47390 * 108.58159 * 2.23608 * 17 16 14 28 28 C 1.53797 * 109.90258 * 155.00313 * 10 9 7 29 29 H 1.09004 * 113.27364 * 264.64343 * 28 10 9 30 30 H 0.97004 * 119.99927 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99979 * 0.02562 * 9 7 2 32 32 H 1.09003 * 110.01810 * 1.12424 * 12 10 9 33 33 H 1.08999 * 110.01996 * 122.46573 * 12 10 9 34 34 H 1.08997 * 111.17663 * 218.83872 * 13 12 10 35 35 H 1.09006 * 110.14966 * 96.12036 * 13 12 10 36 36 H 1.09004 * 109.83833 * 152.04865 * 16 14 13 37 37 H 1.08988 * 109.92942 * 31.08086 * 16 14 13 38 38 H 1.07995 * 119.99843 * 6.08053 * 20 18 17 39 39 H 1.07992 * 120.00260 * 188.85725 * 21 20 18 40 40 H 1.08007 * 126.73564 * 0.02882 * 23 22 21 41 41 H 1.08005 * 126.40044 * 180.10870 * 24 23 22 42 42 H 1.07996 * 125.48330 * 179.77989 * 25 24 23 43 43 H 1.08992 * 110.32717 * 93.72466 * 27 17 16 44 44 H 1.08998 * 110.32292 * 215.94886 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5620 -3.2197 -0.5710 12 6 4.3157 -2.9575 1.4426 13 6 5.8481 -3.0287 1.6879 14 6 6.4542 -3.1439 0.2715 15 1 6.5494 -4.1727 -0.0757 16 6 7.7811 -2.3608 0.2357 17 7 7.4656 -0.9713 -0.1285 18 6 8.3627 0.0197 -0.3009 19 8 7.9848 1.1373 -0.6030 20 6 9.7440 -0.2385 -0.1307 21 6 10.6355 0.7826 -0.1767 22 6 10.1769 2.1221 -0.2062 23 6 10.7105 3.1476 -0.9588 24 6 9.9450 4.2894 -0.6776 25 6 9.0017 3.9271 0.2200 26 8 9.1435 2.6244 0.5013 27 6 6.0040 -0.8423 -0.2673 28 6 5.5087 -2.2691 -0.6127 29 1 5.5536 -2.5139 -1.6740 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.8524 -2.2600 2.1404 33 1 3.8836 -3.9506 1.5660 34 1 6.1112 -3.9015 2.2853 35 1 6.1932 -2.1166 2.1750 36 1 8.4476 -2.7962 -0.5088 37 1 8.2548 -2.3876 1.2169 38 1 10.0876 -1.2480 0.0401 39 1 11.6950 0.5742 -0.1908 40 1 11.5514 3.0837 -1.6337 41 1 10.0859 5.2747 -1.0968 42 1 8.2541 4.5819 0.6425 43 1 5.5632 -0.5025 0.6698 44 1 5.7598 -0.1515 -1.0742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026181173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:39 Heat of formation + Delta-G solvation = 35.818804 kcal Electronic energy + Delta-G solvation = -26891.572973 eV Core-core repulsion = 23198.092040 eV Total energy + Delta-G solvation = -3693.480933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.40390 -40.55848 -38.73022 -35.25762 -34.17486 -33.30343 -32.83542 -31.23829 -29.86283 -28.75081 -28.41994 -25.92329 -24.47185 -23.01845 -22.58701 -21.65950 -20.66742 -19.78395 -18.95838 -18.86648 -18.03052 -17.55500 -16.68338 -16.10262 -15.81057 -15.36694 -15.08629 -14.60207 -14.36823 -14.05726 -13.83308 -13.44214 -13.10678 -12.95228 -12.84191 -12.65333 -12.54645 -12.41160 -12.38872 -12.14692 -12.06139 -11.53871 -10.86773 -10.71342 -10.62444 -10.43444 -10.35205 -10.32469 -10.22633 -9.95267 -9.83218 -9.69844 -9.55278 -8.92200 -8.50970 -8.00839 -7.26603 -5.76646 -3.12333 0.45654 2.09701 2.64605 3.10874 3.20898 3.40947 3.43366 3.45520 3.49611 4.38941 4.50417 4.60809 4.64936 4.75589 4.87905 4.96233 5.02277 5.16787 5.30142 5.35236 5.38444 5.41710 5.51660 5.56056 5.61456 5.64819 5.76278 5.80488 5.85675 5.88506 5.91284 5.95401 6.10415 6.16619 6.24942 6.28824 6.42787 6.44534 6.51889 6.55025 6.72596 6.99234 7.19679 7.62556 8.00047 8.27572 8.42642 9.20808 9.93815 10.12294 11.41588 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.004484 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.349203 B = 6242.662742 C = 8115.264534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.188 3.812 11 H 0.063 0.937 12 C -0.144 4.144 13 C -0.117 4.117 14 C -0.101 4.101 15 H 0.102 0.898 16 C 0.106 3.894 17 N -0.612 5.612 18 C 0.549 3.451 19 O -0.526 6.526 20 C -0.197 4.197 21 C 0.000 4.000 22 C 0.006 3.994 23 C -0.182 4.182 24 C -0.228 4.228 25 C -0.013 4.013 26 O -0.132 6.132 27 C 0.113 3.887 28 C -0.107 4.107 29 H 0.093 0.907 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.198 0.802 43 H 0.078 0.922 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.065 -2.493 0.998 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.706 3.294 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.078 3.922 11 H 0.081 0.919 12 C -0.184 4.184 13 C -0.155 4.155 14 C -0.120 4.120 15 H 0.120 0.880 16 C -0.017 4.017 17 N -0.346 5.346 18 C 0.341 3.659 19 O -0.405 6.405 20 C -0.218 4.218 21 C -0.020 4.020 22 C -0.044 4.044 23 C -0.202 4.202 24 C -0.247 4.247 25 C -0.084 4.084 26 O -0.025 6.025 27 C -0.009 4.009 28 C -0.127 4.127 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.198 0.802 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.214 0.786 43 H 0.096 0.904 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.455 -2.065 1.028 24.563 hybrid contribution 0.542 1.305 -0.134 1.419 sum 24.996 -0.760 0.894 25.024 Atomic orbital electron populations 1.69693 1.05067 1.25810 1.57503 1.24630 0.95162 0.97048 1.01939 0.86687 0.79308 0.85278 0.78081 1.20933 1.21620 1.20276 1.19089 0.80620 0.94693 1.43083 0.89085 1.43070 1.04115 1.02002 1.90173 1.20613 0.89180 0.89442 0.92979 0.91867 1.23120 0.93802 1.01178 1.00307 1.22562 0.96915 1.01080 0.94918 1.23046 0.93090 0.98847 0.97062 0.88005 1.22062 0.97966 0.81758 0.99932 1.48510 1.07640 1.09806 1.68659 1.16787 0.86349 0.83934 0.78853 1.90896 1.80670 1.21283 1.47626 1.22296 0.93479 1.00497 1.05540 1.20618 0.99500 0.88019 0.93844 1.19570 0.90129 0.94479 1.00242 1.22112 1.02906 0.91935 1.03221 1.21608 0.99546 1.00236 1.03337 1.24192 1.00932 0.82960 1.00323 1.84293 1.41456 1.22753 1.53996 1.22303 0.78450 0.97873 1.02275 1.23384 0.96223 0.93563 0.99572 0.88825 0.93055 0.80194 0.90711 0.92616 0.91926 0.91978 0.91724 0.91456 0.84611 0.82795 0.83512 0.83650 0.78560 0.90415 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.96 27.73 -169.99 -4.71 18.25 16 4 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.28 -6.99 6.52 56.52 0.37 -6.63 16 7 C -0.25 -6.87 10.44 -15.06 -0.16 -7.03 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 9 N -0.75 -17.56 4.58 -52.67 -0.24 -17.80 16 10 C 0.19 3.45 3.22 -67.15 -0.22 3.23 16 11 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 12 C -0.14 -2.34 6.54 -25.12 -0.16 -2.50 16 13 C -0.12 -1.49 5.70 -24.70 -0.14 -1.63 16 14 C -0.10 -1.16 4.09 -87.52 -0.36 -1.52 16 15 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 16 C 0.11 1.13 5.29 -3.15 -0.02 1.11 16 17 N -0.61 -8.95 3.32 -174.06 -0.58 -9.53 16 18 C 0.55 8.55 7.41 -15.00 -0.11 8.44 16 19 O -0.53 -10.25 12.65 -19.72 -0.25 -10.50 16 20 C -0.20 -2.19 9.41 -39.25 -0.37 -2.56 16 21 C 0.00 0.00 9.95 -39.23 -0.39 -0.39 16 22 C 0.01 0.08 5.32 -38.40 -0.20 -0.12 16 23 C -0.18 -2.17 10.90 -38.91 -0.42 -2.59 16 24 C -0.23 -2.72 10.87 -39.90 -0.43 -3.16 16 25 C -0.01 -0.18 12.06 29.63 0.36 0.18 16 26 O -0.13 -2.08 7.81 -20.15 -0.16 -2.24 16 27 C 0.11 1.95 4.40 -2.54 -0.01 1.94 16 28 C -0.11 -1.62 4.14 -87.45 -0.36 -1.99 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.60 3.16 -40.82 -0.13 8.47 16 32 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.86 7.40 -51.93 -0.38 0.47 16 36 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 37 H 0.07 0.63 7.82 -51.94 -0.41 0.22 16 38 H 0.14 1.02 7.23 -52.49 -0.38 0.65 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.20 2.01 8.06 -52.49 -0.42 1.58 16 43 H 0.08 1.51 6.35 -51.93 -0.33 1.18 16 44 H 0.08 1.48 7.97 -51.93 -0.41 1.07 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -35.60 351.21 -9.24 -44.84 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.27 Total: 8.86 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.10 Total: -8.43 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.04 Total: -56.07 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.41 Total: -12.74 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.60 -9.24 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026181173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.660 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds