Wall clock time and date at job start Tue Mar 31 2020 11:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48507 * 109.47367 * 269.99952 * 3 2 1 5 5 H 1.48503 * 109.47350 * 30.00267 * 3 2 1 6 6 H 1.48498 * 109.47386 * 149.99998 * 3 2 1 7 7 C 1.38810 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99921 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00157 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.03891 * 33.83960 * 10 9 7 12 12 C 1.53703 * 109.90456 * 272.68356 * 10 9 7 13 13 C 1.55356 * 107.06479 * 241.20632 * 12 10 9 14 14 C 1.54488 * 104.21834 * 337.73789 * 13 12 10 15 15 H 1.09006 * 113.37237 * 271.17969 * 14 13 12 16 16 C 1.54113 * 108.73176 * 144.08306 * 14 13 12 17 17 N 1.47075 * 107.52526 * 271.53909 * 16 14 13 18 18 C 1.34773 * 125.70344 * 181.97583 * 17 16 14 19 19 O 1.21780 * 119.99619 * 180.02562 * 18 17 16 20 20 C 1.41550 * 120.00333 * 0.02562 * 18 17 16 21 21 C 1.35628 * 120.00133 * 186.35510 * 20 18 17 22 22 C 1.41620 * 119.99852 * 8.85953 * 21 20 18 23 23 C 1.37943 * 126.10353 * 219.76540 * 22 21 20 24 24 C 1.40312 * 106.52876 * 179.91032 * 23 22 21 25 25 C 1.35153 * 107.20460 * 0.34802 * 24 23 22 26 26 O 1.34024 * 109.03337 * 359.77997 * 25 24 23 27 27 C 1.47390 * 108.58159 * 2.23608 * 17 16 14 28 28 C 1.53797 * 109.90258 * 155.00313 * 10 9 7 29 29 H 1.09004 * 113.27364 * 264.64343 * 28 10 9 30 30 H 0.97004 * 119.99927 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99979 * 0.02562 * 9 7 2 32 32 H 1.09003 * 110.01810 * 1.12424 * 12 10 9 33 33 H 1.08999 * 110.01996 * 122.46573 * 12 10 9 34 34 H 1.08997 * 111.17663 * 218.83872 * 13 12 10 35 35 H 1.09006 * 110.14966 * 96.12036 * 13 12 10 36 36 H 1.09004 * 109.83833 * 152.04865 * 16 14 13 37 37 H 1.08988 * 109.92942 * 31.08086 * 16 14 13 38 38 H 1.07995 * 119.99843 * 6.08053 * 20 18 17 39 39 H 1.07992 * 120.00260 * 188.85725 * 21 20 18 40 40 H 1.08007 * 126.73564 * 0.02882 * 23 22 21 41 41 H 1.08005 * 126.40044 * 180.10870 * 24 23 22 42 42 H 1.07996 * 125.48330 * 179.77989 * 25 24 23 43 43 H 1.08992 * 110.32717 * 93.72466 * 27 17 16 44 44 H 1.08998 * 110.32292 * 215.94886 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5620 -3.2197 -0.5710 12 6 4.3157 -2.9575 1.4426 13 6 5.8481 -3.0287 1.6879 14 6 6.4542 -3.1439 0.2715 15 1 6.5494 -4.1727 -0.0757 16 6 7.7811 -2.3608 0.2357 17 7 7.4656 -0.9713 -0.1285 18 6 8.3627 0.0197 -0.3009 19 8 7.9848 1.1373 -0.6030 20 6 9.7440 -0.2385 -0.1307 21 6 10.6355 0.7826 -0.1767 22 6 10.1769 2.1221 -0.2062 23 6 10.7105 3.1476 -0.9588 24 6 9.9450 4.2894 -0.6776 25 6 9.0017 3.9271 0.2200 26 8 9.1435 2.6244 0.5013 27 6 6.0040 -0.8423 -0.2673 28 6 5.5087 -2.2691 -0.6127 29 1 5.5536 -2.5139 -1.6740 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.8524 -2.2600 2.1404 33 1 3.8836 -3.9506 1.5660 34 1 6.1112 -3.9015 2.2853 35 1 6.1932 -2.1166 2.1750 36 1 8.4476 -2.7962 -0.5088 37 1 8.2548 -2.3876 1.2169 38 1 10.0876 -1.2480 0.0401 39 1 11.6950 0.5742 -0.1908 40 1 11.5514 3.0837 -1.6337 41 1 10.0859 5.2747 -1.0968 42 1 8.2541 4.5819 0.6425 43 1 5.5632 -0.5025 0.6698 44 1 5.7598 -0.1515 -1.0742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026181173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:38 Heat of formation + Delta-G solvation = 13.040472 kcal Electronic energy + Delta-G solvation = -26892.560715 eV Core-core repulsion = 23198.092040 eV Total energy + Delta-G solvation = -3694.468675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.34278 -41.70939 -39.91859 -36.78068 -35.06704 -34.95308 -33.76808 -33.14465 -31.05066 -30.13012 -29.41053 -27.26761 -25.59310 -24.84137 -23.67974 -22.58101 -21.65355 -20.93867 -20.44246 -20.07813 -19.50510 -18.80932 -17.67689 -17.33244 -16.93546 -16.75309 -16.38382 -16.07400 -15.89544 -15.09885 -14.90692 -14.66288 -14.41416 -14.31078 -13.99142 -13.89940 -13.72280 -13.70035 -13.56268 -13.39724 -13.27111 -13.08427 -12.73626 -12.34176 -12.18732 -11.84674 -11.70786 -11.63704 -11.51302 -11.34094 -11.08072 -11.03898 -10.94263 -10.70614 -9.64915 -9.33129 -8.91829 -8.08952 -5.39096 -0.39238 1.16061 1.26036 1.29272 1.32978 1.73693 2.06286 2.28345 2.38125 2.50119 3.21982 3.25747 3.42517 3.71402 3.78503 3.89389 4.05185 4.12506 4.16562 4.19491 4.26813 4.35553 4.40538 4.48303 4.59554 4.61386 4.71713 4.73958 4.80069 4.83625 4.85714 5.02450 5.04714 5.07493 5.11145 5.23432 5.25991 5.28512 5.41236 5.51534 5.55398 5.67050 5.76327 6.17460 6.27667 6.57517 7.02888 7.18090 7.81673 7.96880 9.13085 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.004484 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.349203 B = 6242.662742 C = 8115.264534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.054 4.054 3 Si 0.935 3.065 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.221 4.221 8 H 0.068 0.932 9 N -0.756 5.756 10 C 0.175 3.825 11 H 0.058 0.942 12 C -0.141 4.141 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.142 0.858 16 C 0.102 3.898 17 N -0.613 5.613 18 C 0.535 3.465 19 O -0.580 6.580 20 C -0.206 4.206 21 C 0.011 3.989 22 C -0.020 4.020 23 C -0.187 4.187 24 C -0.231 4.231 25 C -0.045 4.045 26 O -0.165 6.165 27 C 0.117 3.883 28 C -0.102 4.102 29 H 0.104 0.896 30 H 0.257 0.743 31 H 0.361 0.639 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.180 0.820 39 H 0.205 0.795 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.211 0.789 43 H 0.048 0.952 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.589 -4.587 0.913 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.246 4.246 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.352 4.352 8 H 0.086 0.914 9 N -0.401 5.401 10 C 0.066 3.934 11 H 0.076 0.924 12 C -0.181 4.181 13 C -0.145 4.145 14 C -0.102 4.102 15 H 0.160 0.840 16 C -0.019 4.019 17 N -0.346 5.346 18 C 0.329 3.671 19 O -0.462 6.462 20 C -0.226 4.226 21 C -0.008 4.008 22 C -0.070 4.070 23 C -0.206 4.206 24 C -0.250 4.250 25 C -0.115 4.115 26 O -0.060 6.060 27 C -0.007 4.007 28 C -0.122 4.122 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.198 0.802 39 H 0.222 0.778 40 H 0.194 0.806 41 H 0.186 0.814 42 H 0.227 0.773 43 H 0.066 0.934 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 29.046 -4.223 0.957 29.367 hybrid contribution -0.874 1.912 -0.116 2.106 sum 28.172 -2.311 0.841 28.279 Atomic orbital electron populations 1.69826 1.06551 1.26327 1.60328 1.25234 0.95833 1.00042 1.03469 0.85736 0.78246 0.81788 0.77843 1.21068 1.21604 1.19674 1.19135 0.82685 0.93509 1.39905 0.91438 1.43187 1.02619 1.04123 1.90140 1.20967 0.90611 0.87000 0.94774 0.92423 1.22949 0.97065 1.00643 0.97473 1.22528 0.93503 1.02022 0.96443 1.23126 0.92126 1.00250 0.94660 0.84027 1.22370 0.97958 0.79094 1.02445 1.48612 1.05996 1.11650 1.68359 1.17678 0.88246 0.83229 0.77938 1.90876 1.81773 1.23472 1.50123 1.22424 0.90567 1.02904 1.06755 1.21299 1.01792 0.86212 0.91495 1.20392 0.89697 0.96378 1.00509 1.22556 1.03496 0.91391 1.03166 1.22001 0.98909 1.01460 1.02591 1.24691 1.02270 0.82866 1.01652 1.84258 1.42767 1.23749 1.55176 1.21971 0.80943 0.98386 0.99379 1.23295 0.94771 0.93323 1.00771 0.87798 0.93351 0.80412 0.94340 0.91221 0.88406 0.93396 0.87995 0.89116 0.80247 0.77785 0.80593 0.81433 0.77292 0.93409 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.33 13.97 21.65 0.30 -64.02 16 2 C -0.05 -3.31 5.50 84.86 0.47 -2.84 16 3 Si 0.93 49.66 27.73 68.60 1.90 51.56 16 4 H -0.28 -15.01 7.11 99.48 0.71 -14.30 16 5 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.27 -13.92 6.52 99.48 0.65 -13.27 16 7 C -0.22 -12.87 10.44 84.03 0.88 -11.99 16 8 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 9 N -0.76 -36.53 4.58 -320.54 -1.47 -38.00 16 10 C 0.17 6.38 3.22 45.50 0.15 6.52 16 11 H 0.06 2.16 8.09 -2.38 -0.02 2.14 16 12 C -0.14 -4.48 6.54 31.64 0.21 -4.27 16 13 C -0.11 -2.37 5.70 31.91 0.18 -2.19 16 14 C -0.08 -1.53 4.09 -8.79 -0.04 -1.56 16 15 H 0.14 1.65 8.14 -2.38 -0.02 1.63 16 16 C 0.10 1.67 5.29 86.65 0.46 2.13 16 17 N -0.61 -16.79 3.32 -822.78 -2.74 -19.53 16 18 C 0.53 16.00 7.41 85.06 0.63 16.64 16 19 O -0.58 -23.14 12.65 19.15 0.24 -22.90 16 20 C -0.21 -3.83 9.41 22.48 0.21 -3.62 16 21 C 0.01 0.19 9.95 22.50 0.22 0.42 16 22 C -0.02 -0.51 5.32 23.03 0.12 -0.38 16 23 C -0.19 -4.13 10.90 22.70 0.25 -3.88 16 24 C -0.23 -5.37 10.87 22.06 0.24 -5.13 16 25 C -0.05 -1.23 12.06 67.11 0.81 -0.42 16 26 O -0.17 -5.31 7.81 17.62 0.14 -5.17 16 27 C 0.12 4.07 4.40 86.87 0.38 4.46 16 28 C -0.10 -2.92 4.14 -8.74 -0.04 -2.95 16 29 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 30 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 31 H 0.36 17.76 3.16 -92.71 -0.29 17.47 16 32 H 0.04 1.49 7.91 -2.39 -0.02 1.47 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.21 7.40 -2.38 -0.02 1.20 16 36 H 0.10 1.03 8.06 -2.39 -0.02 1.01 16 37 H 0.09 1.15 7.82 -2.39 -0.02 1.13 16 38 H 0.18 1.61 7.23 -2.91 -0.02 1.59 16 39 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.21 4.57 8.06 -2.91 -0.02 4.54 16 43 H 0.05 1.93 6.35 -2.39 -0.02 1.91 16 44 H 0.04 1.63 7.97 -2.39 -0.02 1.61 16 Total: -1.00 -85.20 351.21 4.17 -81.03 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.66 Total: 26.12 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.13 Total: -9.08 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -3.90 Total: -121.56 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: 0.38 Total: -28.07 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.90 Total: 51.56 kcal Total: -85.20 4.17 -81.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026181173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.072 kcal (2) G-P(sol) polarization free energy of solvation -85.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds