Wall clock time and date at job start Tue Mar 31 2020 11:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38401 * 120.01004 * 2 1 4 4 C 1.38237 * 119.76472 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.35488 * 359.87692 * 4 3 2 6 6 C 1.39243 * 120.23640 * 359.97438 * 5 4 3 7 7 C 1.37699 * 120.01063 * 180.02562 * 2 1 3 8 8 C 1.51643 * 132.18296 * 0.34476 * 7 2 1 9 9 C 1.54715 * 101.92766 * 164.60428 * 8 7 2 10 10 H 1.09001 * 110.74685 * 143.79592 * 9 8 7 11 11 C 1.50698 * 110.74739 * 266.96994 * 9 8 7 12 12 O 1.21283 * 120.00472 * 112.48752 * 11 9 8 13 13 N 1.34777 * 119.99538 * 292.48090 * 11 9 8 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09002 * 112.73936 * 55.33369 * 15 14 13 17 17 C 1.53495 * 113.46840 * 186.07769 * 15 14 13 18 18 C 1.53613 * 83.30382 * 140.83102 * 17 15 14 19 19 N 1.47063 * 113.46484 * 284.58947 * 15 14 13 20 20 C 1.36931 * 136.05897 * 38.06662 * 19 15 14 21 21 H 1.08004 * 120.00471 * 359.97438 * 20 19 15 22 22 C 1.38819 * 120.00341 * 179.97438 * 20 19 15 23 23 N 1.31625 * 119.99317 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47347 * 90.00228 * 24 22 20 26 26 H 1.48508 * 109.47041 * 210.00098 * 24 22 20 27 27 H 1.48498 * 109.47254 * 330.00047 * 24 22 20 28 28 O 1.36576 * 129.82876 * 181.02952 * 6 5 4 29 29 H 1.09000 * 109.46897 * 269.95899 * 1 2 3 30 30 H 1.09008 * 109.47047 * 29.95146 * 1 2 3 31 31 H 1.09001 * 109.47394 * 149.95359 * 1 2 3 32 32 H 1.07992 * 120.11265 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.82187 * 179.85593 * 4 3 2 34 34 H 1.08004 * 119.88415 * 179.97438 * 5 4 3 35 35 H 1.09001 * 110.93566 * 46.45049 * 8 7 2 36 36 H 1.08999 * 110.97066 * 282.77284 * 8 7 2 37 37 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 39 39 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 40 40 H 1.09002 * 114.20371 * 254.43324 * 17 15 14 41 41 H 1.08999 * 114.20596 * 27.25705 * 17 15 14 42 42 H 1.09003 * 113.50241 * 219.18118 * 18 17 15 43 43 H 1.08995 * 113.46998 * 88.77174 * 18 17 15 44 44 H 0.97003 * 119.99751 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1985 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2737 -0.0010 0.0036 6 6 3.5848 -1.2111 0.0068 7 6 2.1957 -1.1924 -0.0005 8 6 1.7320 -2.6362 -0.0079 9 6 3.0258 -3.3855 -0.4057 10 1 3.0955 -4.3396 0.1167 11 6 3.0872 -3.5900 -1.8975 12 8 3.9262 -3.0115 -2.5549 13 7 2.2096 -4.4159 -2.5010 14 6 2.2654 -4.6101 -3.9520 15 6 1.1641 -5.5826 -4.3791 16 1 0.1726 -5.2640 -4.0574 17 6 1.2307 -5.9677 -5.8635 18 6 0.8447 -7.3575 -5.3350 19 7 1.4630 -6.9853 -4.0535 20 6 2.0563 -7.6515 -3.0148 21 1 2.4374 -7.1009 -2.1674 22 6 2.1681 -9.0347 -3.0507 23 7 1.7042 -9.7057 -4.0837 24 14 2.9782 -9.9434 -1.6340 25 1 1.9508 -10.3012 -0.6233 26 1 3.6232 -11.1803 -2.1435 27 1 4.0048 -9.0713 -1.0089 28 8 4.0633 -2.4901 0.0289 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3633 0.8905 -0.5131 31 1 -0.3634 -0.8896 -0.5145 32 1 1.6613 2.1349 -0.0004 33 1 4.1227 2.1272 -0.0018 34 1 5.3538 0.0032 0.0036 35 1 0.9489 -2.7899 -0.7504 36 1 1.3933 -2.9422 0.9819 37 1 1.5383 -4.8784 -1.9753 38 1 2.1190 -3.6529 -4.4526 39 1 3.2377 -5.0189 -4.2268 40 1 0.4671 -5.4963 -6.4822 41 1 2.2305 -5.9152 -6.2944 42 1 1.3576 -8.1738 -5.8435 43 1 -0.2321 -7.5130 -5.2686 44 1 1.7826 -10.6723 -4.1090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038919892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:39 Heat of formation + Delta-G solvation = -5.467793 kcal Electronic energy + Delta-G solvation = -26380.518670 eV Core-core repulsion = 22685.247416 eV Total energy + Delta-G solvation = -3695.271254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.54819 -40.57492 -39.66160 -38.43767 -35.66904 -34.38400 -34.18332 -32.30137 -31.04079 -29.94055 -29.02457 -27.57380 -25.42600 -25.37868 -23.57362 -23.04868 -22.01720 -21.61189 -20.96948 -19.25850 -18.34106 -18.03289 -17.76451 -17.14507 -16.74490 -16.70477 -16.39175 -15.88090 -15.66741 -15.21726 -14.87337 -14.71469 -14.63150 -14.57389 -14.02079 -13.78936 -13.60922 -13.57005 -13.36837 -13.16916 -12.97194 -12.69195 -12.65900 -12.57077 -12.44193 -12.37846 -12.35334 -11.85829 -11.76452 -11.63132 -11.23758 -10.86479 -10.76910 -10.11354 -9.63315 -9.14769 -8.88761 -7.86872 -5.18507 0.30810 0.35958 1.40886 1.44926 1.47104 1.54074 1.88771 2.32007 2.47796 2.73964 3.32657 3.34242 3.39627 3.44644 3.62362 3.83564 3.93701 4.08821 4.11568 4.13872 4.23760 4.33670 4.45212 4.50637 4.58740 4.61608 4.68125 4.68792 4.80751 4.86809 4.87001 4.93059 5.05353 5.08537 5.26317 5.32875 5.35393 5.37264 5.44702 5.58048 5.59384 5.65062 5.74191 5.97549 6.15226 6.45034 6.94088 7.10265 7.65074 8.64481 9.30832 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.003381 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.452784 B = 8280.231421 C = 8951.203679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.151 4.151 4 C -0.083 4.083 5 C -0.162 4.162 6 C 0.076 3.924 7 C -0.187 4.187 8 C -0.085 4.085 9 C 0.060 3.940 10 H 0.164 0.836 11 C 0.493 3.507 12 O -0.578 6.578 13 N -0.700 5.700 14 C 0.131 3.869 15 C 0.137 3.863 16 H 0.075 0.925 17 C -0.137 4.137 18 C 0.143 3.857 19 N -0.629 5.629 20 C -0.207 4.207 21 H 0.090 0.910 22 C -0.071 4.071 23 N -0.954 5.954 24 Si 0.968 3.032 25 H -0.282 1.282 26 H -0.302 1.302 27 H -0.272 1.272 28 O -0.301 6.301 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 21.560 8.763 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.169 4.169 4 C -0.101 4.101 5 C -0.181 4.181 6 C 0.032 3.968 7 C -0.187 4.187 8 C -0.122 4.122 9 C 0.000 4.000 10 H 0.181 0.819 11 C 0.279 3.721 12 O -0.457 6.457 13 N -0.352 5.352 14 C 0.006 3.994 15 C 0.030 3.970 16 H 0.093 0.907 17 C -0.176 4.176 18 C 0.018 3.982 19 N -0.355 5.355 20 C -0.336 4.336 21 H 0.107 0.893 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.797 3.203 25 H -0.209 1.209 26 H -0.229 1.229 27 H -0.197 1.197 28 O -0.214 6.214 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.262 21.598 8.544 23.614 hybrid contribution 0.523 -1.630 0.604 1.816 sum -3.739 19.967 9.148 22.279 Atomic orbital electron populations 1.20865 0.88741 1.03832 1.03584 1.19532 0.97636 0.90723 0.96595 1.21354 0.94112 0.98175 1.03275 1.21211 0.94802 0.97145 0.96905 1.20561 1.00737 0.89633 1.07178 1.20073 0.93272 0.85715 0.97748 1.20802 0.92942 0.96224 1.08774 1.21785 0.95468 0.89277 1.05708 1.23528 0.88265 0.97058 0.91137 0.81905 1.21356 0.80842 0.78893 0.90990 1.90681 1.37967 1.49977 1.67114 1.45822 1.34576 1.45476 1.09307 1.21626 0.99219 0.98782 0.79782 1.22554 0.95766 0.84732 0.93926 0.90746 1.23515 1.02169 0.96883 0.94993 1.22056 0.94878 0.95333 0.85981 1.45975 1.66354 1.02648 1.20510 1.19228 1.28335 0.89142 0.96850 0.89251 1.25536 1.03091 0.97332 1.00432 1.70014 1.52866 1.06050 1.31456 0.85232 0.78156 0.77942 0.78984 1.20931 1.22909 1.19709 1.87016 1.39337 1.14409 1.80667 0.89469 0.89841 0.91307 0.82518 0.82359 0.85650 0.87379 0.85210 0.75105 0.90529 0.94250 0.88113 0.90567 0.94773 0.95718 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.91 71.24 0.71 -0.72 16 2 C -0.04 -0.86 5.87 -19.95 -0.12 -0.98 16 3 C -0.15 -2.60 9.73 22.31 0.22 -2.38 16 4 C -0.08 -1.57 10.02 22.21 0.22 -1.35 16 5 C -0.16 -4.15 10.06 22.45 0.23 -3.93 16 6 C 0.08 2.23 6.87 22.68 0.16 2.39 16 7 C -0.19 -4.46 6.06 -19.53 -0.12 -4.58 16 8 C -0.09 -1.70 6.20 30.73 0.19 -1.51 16 9 C 0.06 1.60 4.10 30.43 0.12 1.72 16 10 H 0.16 3.51 8.14 -2.39 -0.02 3.49 16 11 C 0.49 16.66 7.04 87.66 0.62 17.28 16 12 O -0.58 -24.87 16.49 15.18 0.25 -24.62 16 13 N -0.70 -21.86 5.33 -463.05 -2.47 -24.33 16 14 C 0.13 4.48 5.52 86.38 0.48 4.96 16 15 C 0.14 4.78 4.10 41.79 0.17 4.95 16 16 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 17 C -0.14 -4.59 8.04 30.97 0.25 -4.34 16 18 C 0.14 6.39 7.40 83.21 0.62 7.01 16 19 N -0.63 -29.44 3.65 -713.31 -2.61 -32.05 16 20 C -0.21 -10.77 10.55 84.04 0.89 -9.88 16 21 H 0.09 4.34 7.68 -2.91 -0.02 4.31 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.95 -56.73 11.51 21.65 0.25 -56.48 16 24 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 O -0.30 -9.75 10.46 -82.00 -0.86 -10.61 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.81 8.09 -2.38 -0.02 0.79 16 31 H 0.07 0.87 7.58 -2.39 -0.02 0.85 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.11 1.87 7.62 -2.39 -0.02 1.85 16 36 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 11.34 8.47 -92.71 -0.79 10.55 16 38 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 42 H 0.03 1.77 7.12 -2.39 -0.02 1.75 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -76.07 367.58 1.91 -74.16 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.22 Total: 21.84 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.09 Total: 5.16 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.83 Total: -112.86 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.61 Total: -35.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -76.07 1.91 -74.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038919892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.691 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds