Wall clock time and date at job start Tue Mar 31 2020 11:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48498 * 109.46521 * 274.46348 * 3 2 1 5 5 H 1.48496 * 109.47179 * 34.45917 * 3 2 1 6 6 H 1.48494 * 109.47374 * 154.46712 * 3 2 1 7 7 C 1.38810 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 204.50725 * 7 2 1 9 9 N 1.36937 * 119.99724 * 24.51819 * 7 2 1 10 10 C 1.44788 * 120.18185 * 11.28362 * 9 7 2 11 11 C 1.52358 * 111.74638 * 265.10261 * 10 9 7 12 12 C 1.51321 * 112.41272 * 284.33600 * 11 10 9 13 13 H 1.08995 * 111.31297 * 186.29231 * 12 11 10 14 14 C 1.54710 * 107.22701 * 308.34060 * 12 11 10 15 15 C 1.54237 * 104.37888 * 89.46665 * 14 12 11 16 16 C 1.51127 * 105.27514 * 11.32604 * 15 14 12 17 17 H 1.09005 * 106.47708 * 122.81667 * 16 15 14 18 18 C 1.49818 * 120.18081 * 191.26981 * 9 7 2 19 19 N 1.48066 * 109.76825 * 8.26017 * 16 15 14 20 20 C 1.34774 * 127.84205 * 155.02750 * 19 16 15 21 21 O 1.21774 * 119.99733 * 179.67862 * 20 19 16 22 22 C 1.41542 * 120.00155 * 359.69121 * 20 19 16 23 23 C 1.35628 * 120.00073 * 180.27149 * 22 20 19 24 24 C 1.41613 * 120.00033 * 179.71917 * 23 22 20 25 25 C 1.37941 * 126.10168 * 180.02562 * 24 23 22 26 26 C 1.40324 * 106.52927 * 179.97438 * 25 24 23 27 27 C 1.35153 * 107.20029 * 0.02562 * 26 25 24 28 28 O 1.34020 * 109.03504 * 359.76898 * 27 26 25 29 29 H 0.97002 * 120.00276 * 0.02562 * 1 2 3 30 30 H 1.09002 * 108.93343 * 25.24658 * 10 9 7 31 31 H 1.09006 * 108.93021 * 143.91928 * 10 9 7 32 32 H 1.08998 * 108.31546 * 164.18490 * 11 10 9 33 33 H 1.08999 * 109.99074 * 45.64155 * 11 10 9 34 34 H 1.09001 * 110.45379 * 208.18964 * 14 12 11 35 35 H 1.09007 * 110.45602 * 330.61525 * 14 12 11 36 36 H 1.09000 * 110.28481 * 130.51622 * 15 14 12 37 37 H 1.09005 * 110.28519 * 252.52426 * 15 14 12 38 38 H 1.09001 * 109.54546 * 30.84855 * 18 9 7 39 39 H 1.09003 * 109.54442 * 270.57430 * 18 9 7 40 40 H 1.08007 * 120.00190 * 359.97438 * 22 20 19 41 41 H 1.07994 * 120.00099 * 359.72330 * 23 22 20 42 42 H 1.08004 * 126.74061 * 359.97438 * 25 24 23 43 43 H 1.07991 * 126.39884 * 179.97438 * 26 25 24 44 44 H 1.08000 * 125.47993 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4032 2.1008 -1.3959 5 1 1.4979 2.6236 0.7922 6 1 3.5917 1.4149 0.6034 7 6 2.0103 -1.2021 0.0005 8 1 3.0173 -1.2440 0.3885 9 7 1.4182 -2.3348 -0.4911 10 6 0.1764 -2.2449 -1.2302 11 6 -1.0330 -2.4720 -0.3318 12 6 -1.2231 -3.9310 0.0218 13 1 -2.1515 -4.0878 0.5710 14 6 -1.2103 -4.7290 -1.3036 15 6 0.2752 -5.0802 -1.5248 16 6 0.9636 -4.7365 -0.2241 17 1 1.4508 -5.6495 0.1185 18 6 2.0519 -3.6737 -0.2674 19 7 -0.0474 -4.3972 0.8031 20 6 0.0730 -4.4855 2.1426 21 8 -0.8556 -4.1601 2.8600 22 6 1.2787 -4.9562 2.7153 23 6 1.3978 -5.0503 4.0631 24 6 2.6021 -5.5268 4.6359 25 6 2.8589 -5.6736 5.9832 26 6 4.1662 -6.1726 6.0884 27 6 4.6449 -6.3072 4.8317 28 8 3.7013 -5.9229 3.9610 29 1 -0.4851 0.8400 -0.0004 30 1 0.1005 -1.2525 -1.6748 31 1 0.1842 -2.9891 -2.0266 32 1 -1.9209 -2.1207 -0.8574 33 1 -0.9254 -1.8998 0.5896 34 1 -1.8059 -5.6368 -1.2074 35 1 -1.5843 -4.1141 -2.1222 36 1 0.3838 -6.1422 -1.7449 37 1 0.6878 -4.4823 -2.3376 38 1 2.5935 -3.6674 0.6785 39 1 2.7419 -3.8914 -1.0827 40 1 2.1022 -5.2450 2.0790 41 1 0.5743 -4.7618 4.6994 42 1 2.1859 -5.4486 6.7975 43 1 4.6918 -6.4048 7.0028 44 1 5.6284 -6.6695 4.5710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039323771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:13 Heat of formation + Delta-G solvation = 52.938111 kcal Electronic energy + Delta-G solvation = -27536.437818 eV Core-core repulsion = 23843.699234 eV Total energy + Delta-G solvation = -3692.738584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57303 -40.26958 -37.98450 -34.66439 -34.00301 -33.10525 -32.38110 -31.39632 -30.55987 -28.82619 -27.08759 -25.72009 -24.30583 -23.56569 -21.96520 -21.40365 -20.93212 -19.93126 -19.14085 -17.95931 -17.57735 -16.88980 -16.36777 -16.10778 -15.44686 -15.06064 -14.69750 -14.67537 -14.14273 -13.49528 -13.27335 -13.17110 -13.10268 -12.97243 -12.76028 -12.62912 -12.52790 -12.01999 -11.94199 -11.34406 -11.27300 -11.19455 -10.85064 -10.67372 -10.53819 -10.53188 -10.31247 -10.06843 -9.95802 -9.94315 -9.65649 -9.40688 -8.99406 -8.35469 -8.09085 -7.77364 -6.77986 -5.69612 -3.01562 0.58162 2.12863 2.74888 2.91678 3.42310 3.49369 3.51103 3.51978 3.93332 4.51981 4.66920 4.83770 4.85641 4.89978 5.03874 5.23104 5.26535 5.43188 5.48572 5.51111 5.60795 5.69077 5.75172 5.80401 5.94470 6.03095 6.07012 6.10816 6.14653 6.19418 6.24752 6.35398 6.43855 6.52532 6.54881 6.60685 6.80928 6.86329 7.02605 7.13084 7.26709 7.66618 7.81087 8.15688 8.20141 8.40691 8.73304 9.31602 9.89657 10.39641 11.33880 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004913 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.651403 B = 5697.493283 C = 7000.252076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.001 4.001 3 Si 0.895 3.105 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.131 4.131 12 C 0.131 3.869 13 H 0.077 0.923 14 C -0.126 4.126 15 C -0.117 4.117 16 C 0.122 3.878 17 H 0.051 0.949 18 C 0.133 3.867 19 N -0.585 5.585 20 C 0.573 3.427 21 O -0.557 6.557 22 C -0.172 4.172 23 C -0.016 4.016 24 C 0.009 3.991 25 C -0.177 4.177 26 C -0.218 4.218 27 C -0.029 4.029 28 O -0.165 6.165 29 H 0.250 0.750 30 H 0.075 0.925 31 H 0.018 0.982 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.033 0.967 40 H 0.127 0.873 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -14.782 3.295 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.199 4.199 3 Si 0.726 3.274 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.051 3.949 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.095 0.905 14 C -0.164 4.164 15 C -0.154 4.154 16 C 0.017 3.983 17 H 0.070 0.930 18 C 0.007 3.993 19 N -0.317 5.317 20 C 0.366 3.634 21 O -0.439 6.439 22 C -0.193 4.193 23 C -0.036 4.036 24 C -0.041 4.041 25 C -0.197 4.197 26 C -0.237 4.237 27 C -0.098 4.098 28 O -0.060 6.060 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.145 0.855 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.168 0.832 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.864 -14.484 3.451 15.382 hybrid contribution 0.642 0.967 0.341 1.210 sum 4.506 -13.517 3.792 14.744 Atomic orbital electron populations 1.70214 1.04846 1.24812 1.54151 1.24696 0.95230 0.97854 1.02075 0.86357 0.79236 0.84399 0.77409 1.21739 1.22102 1.20778 1.19226 0.96330 0.85878 1.36252 0.91252 1.44496 1.24313 1.00255 1.62401 1.20332 0.83855 0.99675 0.91059 1.22122 0.99045 0.91506 1.04434 1.21993 0.88575 0.96814 0.89794 0.90489 1.22617 0.95993 0.99673 0.98159 1.21865 0.95823 1.00741 0.97018 1.21375 0.90345 0.97640 0.88905 0.93045 1.21784 0.92893 0.85886 0.98756 1.48784 1.15859 1.63019 1.03992 1.16282 0.87933 0.78829 0.80402 1.90793 1.41916 1.51525 1.59657 1.22210 0.98656 1.02497 0.95914 1.20594 0.92636 0.94806 0.95583 1.19947 0.88084 1.05608 0.90428 1.22299 0.97577 1.04331 0.95443 1.21736 0.96410 1.07227 0.98291 1.24247 0.94302 1.03295 0.87990 1.84121 1.21369 1.63250 1.37264 0.93961 0.90666 0.96464 0.93984 0.88225 0.92220 0.89990 0.91421 0.89435 0.93329 0.94934 0.85465 0.82369 0.82793 0.83176 0.77947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 8.74 55.49 0.48 -24.84 16 2 C 0.00 -0.03 4.85 -17.43 -0.08 -0.11 16 3 Si 0.90 21.98 29.62 -169.99 -5.03 16.95 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.73 9.75 -15.06 -0.15 -6.88 16 8 H 0.07 1.89 7.94 -52.49 -0.42 1.47 16 9 N -0.59 -14.21 2.91 -172.70 -0.50 -14.71 16 10 C 0.18 4.03 4.56 -5.29 -0.02 4.01 16 11 C -0.13 -2.93 4.27 -27.91 -0.12 -3.05 16 12 C 0.13 2.51 3.77 -66.68 -0.25 2.26 16 13 H 0.08 1.52 8.02 -51.93 -0.42 1.10 16 14 C -0.13 -1.88 6.01 -25.18 -0.15 -2.03 16 15 C -0.12 -1.66 5.81 -27.03 -0.16 -1.82 16 16 C 0.12 2.07 2.01 -68.43 -0.14 1.93 16 17 H 0.05 0.76 7.21 -51.93 -0.37 0.39 16 18 C 0.13 2.61 6.19 -2.61 -0.02 2.59 16 19 N -0.58 -11.42 2.62 -160.62 -0.42 -11.84 16 20 C 0.57 11.82 7.64 -15.00 -0.11 11.70 16 21 O -0.56 -13.12 16.47 5.12 0.08 -13.04 16 22 C -0.17 -2.98 8.50 -39.26 -0.33 -3.32 16 23 C -0.02 -0.25 9.39 -39.23 -0.37 -0.62 16 24 C 0.01 0.12 6.84 -38.40 -0.26 -0.14 16 25 C -0.18 -2.09 10.90 -38.91 -0.42 -2.52 16 26 C -0.22 -2.19 10.87 -39.90 -0.43 -2.63 16 27 C -0.03 -0.30 12.06 29.63 0.36 0.06 16 28 O -0.16 -2.23 10.18 4.70 0.05 -2.18 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.08 1.97 6.09 -51.93 -0.32 1.65 16 31 H 0.02 0.35 3.93 -51.93 -0.20 0.14 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 2.77 6.61 -51.93 -0.34 2.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.16 7.40 -51.93 -0.38 0.78 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.28 6.17 -51.93 -0.32 0.96 16 38 H 0.05 0.99 6.95 -51.93 -0.36 0.63 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.13 2.05 5.88 -52.48 -0.31 1.74 16 41 H 0.16 2.40 7.46 -52.49 -0.39 2.01 16 42 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -32.56 343.98 -8.76 -41.32 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.93 Total: 3.71 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.67 Total: -0.55 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.44 Total: -51.39 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.13 Total: -15.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.56 -8.76 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039323771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.258 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds