Wall clock time and date at job start Tue Mar 31 2020 11:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48498 * 109.46521 * 274.46348 * 3 2 1 5 5 H 1.48496 * 109.47179 * 34.45917 * 3 2 1 6 6 H 1.48494 * 109.47374 * 154.46712 * 3 2 1 7 7 C 1.38810 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 204.50725 * 7 2 1 9 9 N 1.36937 * 119.99724 * 24.51819 * 7 2 1 10 10 C 1.44788 * 120.18185 * 11.28362 * 9 7 2 11 11 C 1.52358 * 111.74638 * 265.10261 * 10 9 7 12 12 C 1.51321 * 112.41272 * 284.33600 * 11 10 9 13 13 H 1.08995 * 111.31297 * 186.29231 * 12 11 10 14 14 C 1.54710 * 107.22701 * 308.34060 * 12 11 10 15 15 C 1.54237 * 104.37888 * 89.46665 * 14 12 11 16 16 C 1.51127 * 105.27514 * 11.32604 * 15 14 12 17 17 H 1.09005 * 106.47708 * 122.81667 * 16 15 14 18 18 C 1.49818 * 120.18081 * 191.26981 * 9 7 2 19 19 N 1.48066 * 109.76825 * 8.26017 * 16 15 14 20 20 C 1.34774 * 127.84205 * 155.02750 * 19 16 15 21 21 O 1.21774 * 119.99733 * 179.67862 * 20 19 16 22 22 C 1.41542 * 120.00155 * 359.69121 * 20 19 16 23 23 C 1.35628 * 120.00073 * 180.27149 * 22 20 19 24 24 C 1.41613 * 120.00033 * 179.71917 * 23 22 20 25 25 C 1.37941 * 126.10168 * 180.02562 * 24 23 22 26 26 C 1.40324 * 106.52927 * 179.97438 * 25 24 23 27 27 C 1.35153 * 107.20029 * 0.02562 * 26 25 24 28 28 O 1.34020 * 109.03504 * 359.76898 * 27 26 25 29 29 H 0.97002 * 120.00276 * 0.02562 * 1 2 3 30 30 H 1.09002 * 108.93343 * 25.24658 * 10 9 7 31 31 H 1.09006 * 108.93021 * 143.91928 * 10 9 7 32 32 H 1.08998 * 108.31546 * 164.18490 * 11 10 9 33 33 H 1.08999 * 109.99074 * 45.64155 * 11 10 9 34 34 H 1.09001 * 110.45379 * 208.18964 * 14 12 11 35 35 H 1.09007 * 110.45602 * 330.61525 * 14 12 11 36 36 H 1.09000 * 110.28481 * 130.51622 * 15 14 12 37 37 H 1.09005 * 110.28519 * 252.52426 * 15 14 12 38 38 H 1.09001 * 109.54546 * 30.84855 * 18 9 7 39 39 H 1.09003 * 109.54442 * 270.57430 * 18 9 7 40 40 H 1.08007 * 120.00190 * 359.97438 * 22 20 19 41 41 H 1.07994 * 120.00099 * 359.72330 * 23 22 20 42 42 H 1.08004 * 126.74061 * 359.97438 * 25 24 23 43 43 H 1.07991 * 126.39884 * 179.97438 * 26 25 24 44 44 H 1.08000 * 125.47993 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4032 2.1008 -1.3959 5 1 1.4979 2.6236 0.7922 6 1 3.5917 1.4149 0.6034 7 6 2.0103 -1.2021 0.0005 8 1 3.0173 -1.2440 0.3885 9 7 1.4182 -2.3348 -0.4911 10 6 0.1764 -2.2449 -1.2302 11 6 -1.0330 -2.4720 -0.3318 12 6 -1.2231 -3.9310 0.0218 13 1 -2.1515 -4.0878 0.5710 14 6 -1.2103 -4.7290 -1.3036 15 6 0.2752 -5.0802 -1.5248 16 6 0.9636 -4.7365 -0.2241 17 1 1.4508 -5.6495 0.1185 18 6 2.0519 -3.6737 -0.2674 19 7 -0.0474 -4.3972 0.8031 20 6 0.0730 -4.4855 2.1426 21 8 -0.8556 -4.1601 2.8600 22 6 1.2787 -4.9562 2.7153 23 6 1.3978 -5.0503 4.0631 24 6 2.6021 -5.5268 4.6359 25 6 2.8589 -5.6736 5.9832 26 6 4.1662 -6.1726 6.0884 27 6 4.6449 -6.3072 4.8317 28 8 3.7013 -5.9229 3.9610 29 1 -0.4851 0.8400 -0.0004 30 1 0.1005 -1.2525 -1.6748 31 1 0.1842 -2.9891 -2.0266 32 1 -1.9209 -2.1207 -0.8574 33 1 -0.9254 -1.8998 0.5896 34 1 -1.8059 -5.6368 -1.2074 35 1 -1.5843 -4.1141 -2.1222 36 1 0.3838 -6.1422 -1.7449 37 1 0.6878 -4.4823 -2.3376 38 1 2.5935 -3.6674 0.6785 39 1 2.7419 -3.8914 -1.0827 40 1 2.1022 -5.2450 2.0790 41 1 0.5743 -4.7618 4.6994 42 1 2.1859 -5.4486 6.7975 43 1 4.6918 -6.4048 7.0028 44 1 5.6284 -6.6695 4.5710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039323771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:12 Heat of formation + Delta-G solvation = 33.174215 kcal Electronic energy + Delta-G solvation = -27537.294845 eV Core-core repulsion = 23843.699234 eV Total energy + Delta-G solvation = -3693.595611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49779 -41.75178 -39.52929 -36.48168 -35.27501 -34.11935 -33.81034 -33.08096 -32.23946 -29.89074 -28.86041 -27.24222 -25.68855 -25.28999 -22.96109 -22.61807 -22.40147 -21.19078 -20.66151 -19.36658 -18.84454 -18.43538 -17.90216 -17.06675 -17.01161 -16.53012 -16.41763 -15.84478 -15.73738 -15.30590 -14.92258 -14.66484 -14.44334 -14.09829 -13.91661 -13.83134 -13.67995 -13.51364 -13.14834 -13.10720 -12.88250 -12.78931 -12.64283 -12.33651 -12.01254 -11.99497 -11.86705 -11.72724 -11.64882 -11.47920 -11.00912 -10.84164 -10.68346 -10.34015 -9.56346 -8.91638 -8.72725 -7.77705 -5.09990 -0.57862 1.17590 1.44004 1.45920 1.53650 1.72202 2.02341 2.09566 2.50029 2.53935 3.27972 3.46257 3.60173 3.83220 3.84903 3.95700 4.03701 4.10300 4.12418 4.24674 4.34018 4.46027 4.53383 4.62240 4.68781 4.72559 4.77531 4.89829 4.97457 4.99629 5.03097 5.06282 5.07382 5.18056 5.20142 5.30348 5.33314 5.47748 5.55289 5.60774 5.63139 5.84252 6.10035 6.21877 6.35567 6.72879 7.20937 7.25593 7.96097 8.37378 9.22325 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004913 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.651403 B = 5697.493283 C = 7000.252076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.052 4.052 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.607 5.607 10 C 0.185 3.815 11 C -0.115 4.115 12 C 0.124 3.876 13 H 0.062 0.938 14 C -0.114 4.114 15 C -0.110 4.110 16 C 0.118 3.882 17 H 0.081 0.919 18 C 0.130 3.870 19 N -0.591 5.591 20 C 0.564 3.436 21 O -0.607 6.607 22 C -0.211 4.211 23 C 0.015 3.985 24 C -0.042 4.042 25 C -0.158 4.158 26 C -0.228 4.228 27 C -0.012 4.012 28 O -0.183 6.183 29 H 0.241 0.759 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.138 0.862 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.833 -17.601 3.051 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.248 4.248 3 Si 0.783 3.217 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.059 3.941 11 C -0.156 4.156 12 C 0.021 3.979 13 H 0.080 0.920 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.015 3.985 17 H 0.099 0.901 18 C 0.005 3.995 19 N -0.321 5.321 20 C 0.358 3.642 21 O -0.493 6.493 22 C -0.231 4.231 23 C -0.006 4.006 24 C -0.090 4.090 25 C -0.177 4.177 26 C -0.246 4.246 27 C -0.080 4.080 28 O -0.079 6.079 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.189 0.811 43 H 0.200 0.800 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 6.316 -17.334 3.172 18.720 hybrid contribution 0.067 1.759 0.644 1.874 sum 6.383 -15.575 3.815 17.259 Atomic orbital electron populations 1.70430 1.05833 1.24463 1.55594 1.25345 0.95949 1.00438 1.03028 0.85456 0.78151 0.80957 0.77172 1.21330 1.23177 1.20071 1.19454 0.96193 0.87383 1.35419 0.91793 1.44709 1.24635 1.01386 1.62363 1.20217 0.83600 0.98583 0.91664 1.21857 0.99062 0.93269 1.01391 1.21982 0.88298 0.95473 0.92158 0.92004 1.22562 0.97317 1.00141 0.95183 1.21932 0.94393 1.03388 0.95048 1.21542 0.89569 0.97525 0.89903 0.90094 1.21971 0.94017 0.84552 0.98923 1.48929 1.16537 1.62409 1.04211 1.16860 0.88386 0.78198 0.80729 1.90742 1.43670 1.54096 1.60776 1.21970 0.97966 1.06587 0.96621 1.20664 0.93148 0.91714 0.95024 1.19816 0.88436 1.09450 0.91317 1.22760 0.98592 1.01463 0.94919 1.22177 0.95667 1.07062 0.99709 1.25271 0.94765 1.00193 0.87783 1.84111 1.21755 1.63664 1.38376 0.94954 0.94616 0.92664 0.94111 0.94294 0.89472 0.89071 0.87234 0.89324 0.94649 0.92377 0.84444 0.82982 0.81138 0.80020 0.73775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 8.74 21.65 0.19 -54.48 16 2 C -0.05 -3.00 4.85 84.86 0.41 -2.59 16 3 Si 0.95 46.65 29.62 68.60 2.03 48.68 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.25 -14.17 9.75 84.03 0.82 -13.35 16 8 H 0.06 3.55 7.94 -2.91 -0.02 3.53 16 9 N -0.61 -29.54 2.91 -700.30 -2.04 -31.58 16 10 C 0.19 8.58 4.56 86.49 0.39 8.98 16 11 C -0.12 -5.39 4.27 29.83 0.13 -5.26 16 12 C 0.12 4.82 3.77 44.61 0.17 4.99 16 13 H 0.06 2.55 8.02 -2.39 -0.02 2.53 16 14 C -0.11 -3.08 6.01 31.60 0.19 -2.89 16 15 C -0.11 -2.70 5.81 30.40 0.18 -2.53 16 16 C 0.12 3.77 2.01 43.81 0.09 3.85 16 17 H 0.08 2.15 7.21 -2.38 -0.02 2.13 16 18 C 0.13 4.97 6.19 85.46 0.53 5.50 16 19 N -0.59 -23.29 2.62 -780.26 -2.04 -25.33 16 20 C 0.56 24.28 7.64 85.06 0.65 24.93 16 21 O -0.61 -30.54 16.47 -4.59 -0.08 -30.61 16 22 C -0.21 -7.53 8.50 22.48 0.19 -7.34 16 23 C 0.01 0.47 9.39 22.50 0.21 0.68 16 24 C -0.04 -1.13 6.84 23.03 0.16 -0.97 16 25 C -0.16 -3.39 10.90 22.71 0.25 -3.14 16 26 C -0.23 -3.74 10.87 22.07 0.24 -3.50 16 27 C -0.01 -0.19 12.06 67.11 0.81 0.62 16 28 O -0.18 -4.61 10.18 -6.09 -0.06 -4.67 16 29 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.04 1.93 6.09 -2.39 -0.01 1.91 16 31 H 0.06 2.13 3.93 -2.38 -0.01 2.12 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 2.30 6.61 -2.39 -0.02 2.29 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 2.33 7.40 -2.38 -0.02 2.31 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 2.20 6.17 -2.38 -0.01 2.18 16 38 H 0.04 1.44 6.95 -2.39 -0.02 1.42 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.14 4.45 5.88 -2.91 -0.02 4.43 16 41 H 0.15 4.90 7.46 -2.91 -0.02 4.88 16 42 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.25 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -77.28 343.98 4.43 -72.85 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.01 Total: 17.16 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.41 Total: 7.98 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -3.89 Total: -111.39 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.14 Total: -35.28 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.28 4.43 -72.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039323771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.023 kcal (2) G-P(sol) polarization free energy of solvation -77.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds