Wall clock time and date at job start Tue Mar 31 2020 11:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47065 * 299.99518 * 3 2 1 6 6 H 1.48503 * 109.47343 * 59.99759 * 3 2 1 7 7 C 1.38810 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.47128 * 125.60874 * 359.97438 * 9 7 2 11 11 C 1.54584 * 107.33060 * 179.09955 * 10 9 7 12 12 C 1.53705 * 102.94710 * 339.02818 * 11 10 9 13 13 C 1.52881 * 111.75101 * 154.44052 * 12 11 10 14 14 C 1.54754 * 104.40839 * 121.73597 * 13 12 11 15 15 N 1.48283 * 104.66743 * 23.67744 * 14 13 12 16 16 C 1.34769 * 127.72181 * 141.30001 * 15 14 13 17 17 O 1.21774 * 120.00106 * 179.97438 * 16 15 14 18 18 C 1.41550 * 119.99975 * 359.97392 * 16 15 14 19 19 C 1.35627 * 120.00129 * 173.52786 * 18 16 15 20 20 C 1.41610 * 119.99946 * 350.02208 * 19 18 16 21 21 C 1.37947 * 126.10511 * 139.66101 * 20 19 18 22 22 C 1.40316 * 106.52800 * 179.97438 * 21 20 19 23 23 C 1.35150 * 107.20772 * 359.97438 * 22 21 20 24 24 O 1.34025 * 109.03249 * 359.76969 * 23 22 21 25 25 C 1.48482 * 104.55557 * 321.27594 * 15 14 13 26 26 C 1.47713 * 125.60366 * 180.02562 * 9 7 2 27 27 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.87431 * 59.66225 * 10 9 7 29 29 H 1.09004 * 109.99359 * 298.59723 * 10 9 7 30 30 H 1.09000 * 110.75221 * 97.44758 * 11 10 9 31 31 H 1.09005 * 110.74683 * 220.61314 * 11 10 9 32 32 H 1.09001 * 110.44804 * 240.46966 * 13 12 11 33 33 H 1.08996 * 110.45066 * 2.88533 * 13 12 11 34 34 H 1.09000 * 110.40005 * 142.47258 * 14 13 12 35 35 H 1.09001 * 110.40255 * 264.75926 * 14 13 12 36 36 H 1.08004 * 119.99945 * 353.52373 * 18 16 15 37 37 H 1.08004 * 120.00183 * 170.02837 * 19 18 16 38 38 H 1.08003 * 126.73437 * 359.97438 * 21 20 19 39 39 H 1.08004 * 126.39567 * 180.02562 * 22 21 20 40 40 H 1.07999 * 125.48730 * 179.97438 * 23 22 21 41 41 H 1.09001 * 110.47307 * 279.53748 * 25 15 14 42 42 H 1.09007 * 110.47033 * 156.93777 * 25 15 14 43 43 H 1.09001 * 110.38579 * 321.36449 * 26 9 7 44 44 H 1.08991 * 110.39056 * 83.75760 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1386 -2.5318 0.0028 11 6 -0.4527 -4.0452 -0.0195 12 6 0.8456 -4.6584 -0.5680 13 6 1.0244 -6.1070 -0.1132 14 6 1.1227 -6.9146 -1.4296 15 7 1.5811 -5.9310 -2.4402 16 6 2.4571 -6.1286 -3.4450 17 8 2.7346 -5.2141 -4.1997 18 6 3.0548 -7.3993 -3.6233 19 6 3.8331 -7.6365 -4.7084 20 6 3.8799 -6.6954 -5.7655 21 6 5.0052 -6.3178 -6.4685 22 6 4.5854 -5.3710 -7.4152 23 6 3.2526 -5.2117 -7.2575 24 8 2.8306 -6.0127 -6.2693 25 6 0.8587 -4.6798 -2.0976 26 6 1.9357 -3.7332 0.0028 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5587 -2.0531 -0.8818 29 1 -0.5568 -2.0799 0.9023 30 1 -0.6582 -4.4119 0.9862 31 1 -1.2904 -4.2560 -0.6844 32 1 1.9403 -6.2134 0.4681 33 1 0.1636 -6.4316 0.4713 34 1 1.8490 -7.7208 -1.3274 35 1 0.1468 -7.3160 -1.7030 36 1 2.8911 -8.1800 -2.8951 37 1 4.4171 -8.5432 -4.7664 38 1 6.0117 -6.6799 -6.3194 39 1 5.2105 -4.8648 -8.1359 40 1 2.6276 -4.5485 -7.8370 41 1 -0.1589 -4.7082 -2.4873 42 1 1.3927 -3.8126 -2.4865 43 1 2.8194 -3.7499 -0.6351 44 1 2.1937 -4.0323 1.0186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041022214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:39 Heat of formation + Delta-G solvation = 47.782010 kcal Electronic energy + Delta-G solvation = -26764.769565 eV Core-core repulsion = 23071.807396 eV Total energy + Delta-G solvation = -3692.962169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.33831 -40.16447 -38.45192 -35.64088 -34.07715 -32.77951 -32.62973 -30.58403 -29.12241 -28.98273 -27.92917 -25.98626 -24.54154 -23.06522 -22.29944 -21.60104 -20.65083 -20.19037 -18.88910 -18.60339 -17.67005 -16.73495 -16.64462 -15.80021 -15.55558 -15.27698 -14.66437 -14.28083 -14.22654 -14.01411 -13.67135 -13.56442 -13.20749 -12.89098 -12.79790 -12.56716 -12.36417 -12.14172 -11.86426 -11.76899 -11.44998 -11.34839 -11.19502 -10.83169 -10.76350 -10.16187 -10.11331 -9.95476 -9.89874 -9.80316 -9.75117 -9.63239 -9.56878 -8.55472 -8.47514 -7.93823 -6.77422 -5.66062 -2.98865 0.54108 2.15563 2.71757 3.16890 3.27604 3.43927 3.49739 3.52020 3.52897 4.53913 4.60190 4.70282 4.78464 4.98545 5.01226 5.04495 5.08054 5.21436 5.33779 5.46775 5.54743 5.58435 5.64933 5.71036 5.83483 5.88712 5.94416 5.95444 5.99404 6.07462 6.16440 6.22269 6.31111 6.41591 6.46023 6.55739 6.57871 6.62684 6.81322 6.88337 7.24841 7.61492 7.65913 7.77915 7.87684 8.30771 8.38768 9.27824 9.87710 10.53611 11.45769 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003852 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.162633 B = 7267.524677 C = 8780.097644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.131 4.131 12 C -0.087 4.087 13 C -0.120 4.120 14 C 0.101 3.899 15 N -0.618 5.618 16 C 0.555 3.445 17 O -0.525 6.525 18 C -0.195 4.195 19 C -0.002 4.002 20 C 0.010 3.990 21 C -0.183 4.183 22 C -0.227 4.227 23 C -0.015 4.015 24 O -0.135 6.135 25 C 0.130 3.870 26 C 0.152 3.848 27 H 0.251 0.749 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.198 0.802 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -19.914 -8.439 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.088 4.088 13 C -0.159 4.159 14 C -0.022 4.022 15 N -0.352 5.352 16 C 0.347 3.653 17 O -0.403 6.403 18 C -0.216 4.216 19 C -0.022 4.022 20 C -0.041 4.041 21 C -0.203 4.203 22 C -0.246 4.246 23 C -0.085 4.085 24 O -0.029 6.029 25 C 0.008 3.992 26 C 0.026 3.974 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.214 0.786 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.055 0.945 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.637 -19.229 -8.810 21.462 hybrid contribution 0.578 1.023 0.126 1.182 sum 4.216 -18.206 -8.684 20.606 Atomic orbital electron populations 1.69972 1.04826 1.24785 1.57476 1.24769 0.95705 0.97566 1.02392 0.86065 0.78778 0.83900 0.77184 1.20550 1.21770 1.21803 1.19102 0.90443 0.82451 1.43290 0.90544 1.44567 1.01619 0.99814 1.87134 1.21209 0.84317 0.88121 1.01070 1.22822 0.94954 0.99662 0.99560 1.21714 0.98668 0.94087 0.94371 1.22401 1.02743 0.94518 0.96196 1.22488 0.99486 0.92040 0.88183 1.49097 1.42754 1.13768 1.29611 1.16684 0.79082 0.89292 0.80247 1.90897 1.61105 1.44703 1.43629 1.22311 1.01518 0.97566 1.00214 1.20598 0.95731 0.95996 0.89910 1.19546 0.86497 0.98795 0.99225 1.22109 0.98552 1.01774 0.97829 1.21605 0.95315 1.03826 1.03828 1.24139 0.95799 0.96368 0.92233 1.84248 1.35464 1.43240 1.39908 1.22129 0.96084 0.87246 0.93770 1.21472 0.93659 0.85778 0.96520 0.93904 0.93635 0.93961 0.92053 0.92030 0.90826 0.90217 0.90721 0.91179 0.84645 0.82847 0.83539 0.83685 0.78570 0.91508 0.89100 0.94506 0.96291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 10.31 55.49 0.57 -27.03 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.77 3.41 -170.19 -0.58 -16.35 16 10 C 0.18 4.32 5.33 -2.87 -0.02 4.30 16 11 C -0.13 -2.36 5.81 -25.53 -0.15 -2.51 16 12 C -0.09 -1.47 0.82 -153.72 -0.13 -1.60 16 13 C -0.12 -1.49 6.33 -25.87 -0.16 -1.66 16 14 C 0.10 1.11 6.89 -2.14 -0.01 1.10 16 15 N -0.62 -9.41 3.33 -172.96 -0.58 -9.99 16 16 C 0.56 8.99 7.46 -15.00 -0.11 8.88 16 17 O -0.52 -10.61 12.81 -19.51 -0.25 -10.86 16 18 C -0.20 -2.27 9.44 -39.25 -0.37 -2.64 16 19 C 0.00 -0.03 9.95 -39.23 -0.39 -0.42 16 20 C 0.01 0.13 5.26 -38.40 -0.20 -0.07 16 21 C -0.18 -2.28 10.90 -38.91 -0.42 -2.70 16 22 C -0.23 -2.78 10.87 -39.90 -0.43 -3.21 16 23 C -0.02 -0.20 12.06 29.63 0.36 0.16 16 24 O -0.14 -2.12 7.97 -19.96 -0.16 -2.28 16 25 C 0.13 2.30 6.11 -2.96 -0.02 2.29 16 26 C 0.15 3.23 5.97 -2.88 -0.02 3.21 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 1.23 7.39 -51.93 -0.38 0.85 16 29 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 30 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 31 H 0.06 1.00 7.67 -51.93 -0.40 0.60 16 32 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 33 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 34 H 0.07 0.63 6.64 -51.93 -0.34 0.28 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.14 1.08 6.58 -52.48 -0.35 0.74 16 37 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 40 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.07 1.13 7.62 -51.93 -0.40 0.74 16 42 H 0.09 2.01 7.60 -51.92 -0.39 1.61 16 43 H 0.04 0.83 8.00 -51.93 -0.42 0.41 16 44 H 0.02 0.40 7.93 -51.93 -0.41 -0.01 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -35.63 354.27 -9.35 -44.98 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.34 Total: 0.18 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.33 Total: -1.83 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.58 Total: -53.36 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.41 Total: -13.14 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.63 -9.35 -44.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041022214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.765 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds