Wall clock time and date at job start Tue Mar 31 2020 11:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47065 * 299.99518 * 3 2 1 6 6 H 1.48503 * 109.47343 * 59.99759 * 3 2 1 7 7 C 1.38810 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.47128 * 125.60874 * 359.97438 * 9 7 2 11 11 C 1.54584 * 107.33060 * 179.09955 * 10 9 7 12 12 C 1.53705 * 102.94710 * 339.02818 * 11 10 9 13 13 C 1.52881 * 111.75101 * 154.44052 * 12 11 10 14 14 C 1.54754 * 104.40839 * 121.73597 * 13 12 11 15 15 N 1.48283 * 104.66743 * 23.67744 * 14 13 12 16 16 C 1.34769 * 127.72181 * 141.30001 * 15 14 13 17 17 O 1.21774 * 120.00106 * 179.97438 * 16 15 14 18 18 C 1.41550 * 119.99975 * 359.97392 * 16 15 14 19 19 C 1.35627 * 120.00129 * 173.52786 * 18 16 15 20 20 C 1.41610 * 119.99946 * 350.02208 * 19 18 16 21 21 C 1.37947 * 126.10511 * 139.66101 * 20 19 18 22 22 C 1.40316 * 106.52800 * 179.97438 * 21 20 19 23 23 C 1.35150 * 107.20772 * 359.97438 * 22 21 20 24 24 O 1.34025 * 109.03249 * 359.76969 * 23 22 21 25 25 C 1.48482 * 104.55557 * 321.27594 * 15 14 13 26 26 C 1.47713 * 125.60366 * 180.02562 * 9 7 2 27 27 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.87431 * 59.66225 * 10 9 7 29 29 H 1.09004 * 109.99359 * 298.59723 * 10 9 7 30 30 H 1.09000 * 110.75221 * 97.44758 * 11 10 9 31 31 H 1.09005 * 110.74683 * 220.61314 * 11 10 9 32 32 H 1.09001 * 110.44804 * 240.46966 * 13 12 11 33 33 H 1.08996 * 110.45066 * 2.88533 * 13 12 11 34 34 H 1.09000 * 110.40005 * 142.47258 * 14 13 12 35 35 H 1.09001 * 110.40255 * 264.75926 * 14 13 12 36 36 H 1.08004 * 119.99945 * 353.52373 * 18 16 15 37 37 H 1.08004 * 120.00183 * 170.02837 * 19 18 16 38 38 H 1.08003 * 126.73437 * 359.97438 * 21 20 19 39 39 H 1.08004 * 126.39567 * 180.02562 * 22 21 20 40 40 H 1.07999 * 125.48730 * 179.97438 * 23 22 21 41 41 H 1.09001 * 110.47307 * 279.53748 * 25 15 14 42 42 H 1.09007 * 110.47033 * 156.93777 * 25 15 14 43 43 H 1.09001 * 110.38579 * 321.36449 * 26 9 7 44 44 H 1.08991 * 110.39056 * 83.75760 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1386 -2.5318 0.0028 11 6 -0.4527 -4.0452 -0.0195 12 6 0.8456 -4.6584 -0.5680 13 6 1.0244 -6.1070 -0.1132 14 6 1.1227 -6.9146 -1.4296 15 7 1.5811 -5.9310 -2.4402 16 6 2.4571 -6.1286 -3.4450 17 8 2.7346 -5.2141 -4.1997 18 6 3.0548 -7.3993 -3.6233 19 6 3.8331 -7.6365 -4.7084 20 6 3.8799 -6.6954 -5.7655 21 6 5.0052 -6.3178 -6.4685 22 6 4.5854 -5.3710 -7.4152 23 6 3.2526 -5.2117 -7.2575 24 8 2.8306 -6.0127 -6.2693 25 6 0.8587 -4.6798 -2.0976 26 6 1.9357 -3.7332 0.0028 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5587 -2.0531 -0.8818 29 1 -0.5568 -2.0799 0.9023 30 1 -0.6582 -4.4119 0.9862 31 1 -1.2904 -4.2560 -0.6844 32 1 1.9403 -6.2134 0.4681 33 1 0.1636 -6.4316 0.4713 34 1 1.8490 -7.7208 -1.3274 35 1 0.1468 -7.3160 -1.7030 36 1 2.8911 -8.1800 -2.8951 37 1 4.4171 -8.5432 -4.7664 38 1 6.0117 -6.6799 -6.3194 39 1 5.2105 -4.8648 -8.1359 40 1 2.6276 -4.5485 -7.8370 41 1 -0.1589 -4.7082 -2.4873 42 1 1.3927 -3.8126 -2.4865 43 1 2.8194 -3.7499 -0.6351 44 1 2.1937 -4.0323 1.0186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041022214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:37 Heat of formation + Delta-G solvation = 25.388348 kcal Electronic energy + Delta-G solvation = -26765.740627 eV Core-core repulsion = 23071.807396 eV Total energy + Delta-G solvation = -3693.933231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.30803 -41.42245 -39.82238 -37.20375 -35.02384 -34.50199 -33.73796 -32.20968 -30.68619 -30.09186 -29.31290 -27.57434 -26.22665 -24.21464 -23.51964 -22.56096 -22.15250 -21.62196 -20.21351 -19.73786 -18.95516 -18.53618 -17.67379 -16.86731 -16.83985 -16.71380 -16.36115 -15.88238 -15.56757 -15.15126 -15.00731 -14.79842 -14.49808 -14.29972 -13.86139 -13.72435 -13.59674 -13.40013 -13.24900 -13.13743 -12.96041 -12.90079 -12.67554 -12.62535 -12.52022 -12.03031 -11.88495 -11.53710 -11.39467 -11.19794 -11.04029 -10.92699 -10.73468 -10.68698 -9.67931 -8.91837 -8.88327 -7.88873 -5.23596 -0.35425 1.18737 1.39501 1.41333 1.51306 1.76680 2.07978 2.31649 2.45186 2.52959 3.28189 3.47992 3.64248 3.67145 3.85920 3.87509 4.01161 4.14669 4.19310 4.26506 4.33798 4.41793 4.49764 4.64266 4.67917 4.72776 4.79057 4.83310 4.87419 4.91304 4.94786 5.04594 5.07444 5.09679 5.13902 5.21196 5.36444 5.39446 5.41021 5.47070 5.68668 5.69216 5.77375 6.17377 6.29334 6.66902 7.08159 7.23487 7.74915 8.38766 9.21201 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003852 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.162633 B = 7267.524677 C = 8780.097644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.628 5.628 10 C 0.183 3.817 11 C -0.113 4.113 12 C -0.074 4.074 13 C -0.111 4.111 14 C 0.101 3.899 15 N -0.621 5.621 16 C 0.540 3.460 17 O -0.582 6.582 18 C -0.206 4.206 19 C 0.009 3.991 20 C -0.017 4.017 21 C -0.192 4.192 22 C -0.233 4.233 23 C -0.042 4.042 24 O -0.165 6.165 25 C 0.133 3.867 26 C 0.150 3.850 27 H 0.247 0.753 28 H 0.003 0.997 29 H 0.008 0.992 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.181 0.819 37 H 0.205 0.795 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.215 0.785 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.014 0.986 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -23.567 -7.686 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.152 4.152 12 C -0.076 4.076 13 C -0.149 4.149 14 C -0.020 4.020 15 N -0.354 5.354 16 C 0.335 3.665 17 O -0.465 6.465 18 C -0.226 4.226 19 C -0.010 4.010 20 C -0.067 4.067 21 C -0.211 4.211 22 C -0.252 4.252 23 C -0.111 4.111 24 O -0.059 6.059 25 C 0.010 3.990 26 C 0.025 3.975 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.198 0.802 37 H 0.222 0.778 38 H 0.191 0.809 39 H 0.185 0.815 40 H 0.232 0.768 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.033 0.967 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.439 -22.943 -8.029 24.710 hybrid contribution 0.379 2.220 -0.174 2.259 sum 4.818 -20.723 -8.203 22.802 Atomic orbital electron populations 1.70191 1.06094 1.25128 1.58300 1.25596 0.96666 1.00800 1.02585 0.85064 0.78024 0.79646 0.76957 1.19482 1.21957 1.21152 1.19422 0.90687 0.84194 1.43033 0.90997 1.44879 1.02686 1.00933 1.86929 1.20996 0.83254 0.92506 0.97396 1.22704 0.96168 0.94453 1.01854 1.21597 0.95975 0.96531 0.93492 1.22429 1.04616 0.90437 0.97458 1.22817 1.01909 0.91573 0.85674 1.49221 1.42269 1.13533 1.30355 1.17602 0.78738 0.90598 0.79579 1.90873 1.63050 1.46852 1.45701 1.22433 1.01751 0.96266 1.02106 1.21283 0.94965 0.96498 0.88263 1.20345 0.86564 0.99435 1.00350 1.22547 0.99533 1.01574 0.97416 1.22001 0.95252 1.03781 1.04176 1.24706 0.96966 0.96947 0.92508 1.84217 1.36909 1.44060 1.40756 1.21848 0.95825 0.86970 0.94371 1.21641 0.94285 0.84739 0.96865 0.94380 0.97860 0.97375 0.89325 0.89764 0.90029 0.87057 0.86831 0.88730 0.80170 0.77837 0.80911 0.81525 0.76829 0.90920 0.95010 0.96727 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.39 10.31 21.65 0.22 -59.17 16 2 C -0.06 -3.82 5.49 84.86 0.47 -3.35 16 3 Si 0.97 48.51 29.55 68.60 2.03 50.54 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.24 -14.71 10.28 84.03 0.86 -13.85 16 8 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -34.17 3.41 -692.37 -2.36 -36.52 16 10 C 0.18 9.30 5.33 86.80 0.46 9.76 16 11 C -0.11 -3.93 5.81 31.37 0.18 -3.75 16 12 C -0.07 -2.43 0.82 -51.67 -0.04 -2.47 16 13 C -0.11 -2.27 6.33 31.15 0.20 -2.07 16 14 C 0.10 1.74 6.89 86.63 0.60 2.34 16 15 N -0.62 -17.98 3.33 -819.32 -2.73 -20.71 16 16 C 0.54 17.18 7.46 85.06 0.63 17.81 16 17 O -0.58 -24.59 12.81 18.97 0.24 -24.35 16 18 C -0.21 -4.13 9.44 22.48 0.21 -3.92 16 19 C 0.01 0.17 9.95 22.50 0.22 0.39 16 20 C -0.02 -0.46 5.26 23.03 0.12 -0.34 16 21 C -0.19 -4.57 10.90 22.71 0.25 -4.32 16 22 C -0.23 -5.69 10.87 22.06 0.24 -5.45 16 23 C -0.04 -1.14 12.06 67.11 0.81 -0.33 16 24 O -0.17 -5.33 7.97 17.33 0.14 -5.20 16 25 C 0.13 4.81 6.11 85.99 0.53 5.34 16 26 C 0.15 6.45 5.97 86.47 0.52 6.97 16 27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.00 0.18 7.39 -2.39 -0.02 0.16 16 29 H 0.01 0.45 7.50 -2.38 -0.02 0.44 16 30 H 0.09 2.63 7.89 -2.39 -0.02 2.62 16 31 H 0.08 2.56 7.67 -2.38 -0.02 2.55 16 32 H 0.08 1.60 7.68 -2.39 -0.02 1.58 16 33 H 0.11 1.68 7.63 -2.39 -0.02 1.66 16 34 H 0.11 1.14 6.64 -2.39 -0.02 1.13 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.18 1.83 6.58 -2.91 -0.02 1.81 16 37 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.22 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.07 2.49 7.62 -2.39 -0.02 2.47 16 42 H 0.03 1.51 7.60 -2.38 -0.02 1.49 16 43 H 0.01 0.68 8.00 -2.39 -0.02 0.66 16 44 H 0.03 1.33 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -87.05 354.27 4.79 -82.25 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.00 Total: 10.40 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.26 Total: 2.77 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.87 Total: -116.41 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: 0.38 Total: -29.55 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -87.05 4.79 -82.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041022214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.641 kcal (2) G-P(sol) polarization free energy of solvation -87.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds