Wall clock time and date at job start Tue Mar 31 2020 11:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48507 * 109.47285 * 270.00145 * 3 2 1 5 5 H 1.48499 * 109.47062 * 29.99935 * 3 2 1 6 6 H 1.48498 * 109.47350 * 150.00353 * 3 2 1 7 7 C 1.38811 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.47671 * 134.45791 * 179.97438 * 9 7 2 11 11 C 1.53466 * 86.10109 * 204.32187 * 10 9 7 12 12 C 1.48038 * 134.59926 * 0.04705 * 9 7 2 13 13 C 1.52888 * 113.50406 * 222.26221 * 11 10 9 14 14 N 1.47344 * 108.04784 * 277.00039 * 13 11 10 15 15 C 1.34770 * 121.05613 * 131.63644 * 14 13 11 16 16 O 1.21284 * 119.99667 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00184 * 179.97438 * 15 14 13 18 18 C 1.50289 * 109.46894 * 300.02693 * 17 15 14 19 19 C 1.32320 * 121.60063 * 303.32708 * 18 17 15 20 20 C 1.45197 * 123.00651 * 1.01435 * 19 18 17 21 21 C 1.32942 * 125.19744 * 319.52340 * 20 19 18 22 22 C 1.45202 * 125.20142 * 0.02813 * 21 20 19 23 23 C 1.32299 * 123.02177 * 40.42159 * 22 21 20 24 24 C 1.47126 * 117.89042 * 311.60985 * 14 13 11 25 25 C 1.53229 * 108.72921 * 52.22274 * 24 14 13 26 26 O 1.42483 * 113.76316 * 91.22526 * 11 10 9 27 27 H 0.97002 * 120.00542 * 359.97438 * 1 2 3 28 28 H 1.09002 * 113.79271 * 89.99681 * 10 9 7 29 29 H 1.09003 * 113.79473 * 318.64088 * 10 9 7 30 30 H 1.08997 * 113.79117 * 41.40660 * 12 9 7 31 31 H 1.09000 * 113.89458 * 269.95559 * 12 9 7 32 32 H 1.09004 * 109.74786 * 36.63624 * 13 11 10 33 33 H 1.09001 * 109.74948 * 157.36259 * 13 11 10 34 34 H 1.08998 * 109.46651 * 60.01542 * 17 15 14 35 35 H 1.08005 * 119.20276 * 123.31714 * 18 17 15 36 36 H 1.08001 * 118.50281 * 180.97570 * 19 18 17 37 37 H 1.08000 * 117.39886 * 139.55393 * 20 19 18 38 38 H 1.08002 * 117.39540 * 179.97438 * 21 20 19 39 39 H 1.07998 * 118.48846 * 220.41225 * 22 21 20 40 40 H 1.07994 * 119.19723 * 179.04560 * 23 22 21 41 41 H 1.09000 * 109.59563 * 292.44331 * 24 14 13 42 42 H 1.09006 * 109.59252 * 171.99088 * 24 14 13 43 43 H 1.09001 * 109.49421 * 185.91011 * 25 24 14 44 44 H 1.09004 * 109.49575 * 65.82506 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7214 -3.8108 0.0005 11 6 0.3492 -4.0841 -0.6301 12 6 -0.1070 -2.7613 -0.0008 13 6 -0.3546 -5.3114 -0.0505 14 7 0.1701 -6.5051 -0.7367 15 6 0.5752 -7.5855 -0.0404 16 8 0.5115 -7.5851 1.1708 17 6 1.1074 -8.7939 -0.7666 18 6 0.0486 -9.3312 -1.6879 19 6 -1.1450 -9.6861 -1.2402 20 6 -1.5341 -9.5680 0.1536 21 6 -0.7549 -9.8496 1.1933 22 6 0.6155 -10.3218 1.1085 23 6 1.4873 -9.8512 0.2317 24 6 0.2371 -6.4803 -2.2062 25 6 0.9830 -5.2153 -2.6435 26 8 0.3590 -4.0698 -2.0548 27 1 -0.4851 0.8400 0.0004 28 1 1.8392 -4.2344 0.9979 29 1 2.5604 -4.0338 -0.6585 30 1 -0.7203 -2.1487 -0.6615 31 1 -0.5351 -2.8727 0.9954 32 1 -0.1516 -5.3819 1.0182 33 1 -1.4289 -5.2330 -0.2175 34 1 1.9851 -8.5111 -1.3478 35 1 0.2670 -9.4300 -2.7410 36 1 -1.8628 -10.0811 -1.9439 37 1 -2.5366 -9.2244 0.3624 38 1 -1.1745 -9.7158 2.1794 39 1 0.9381 -11.0925 1.7928 40 1 2.4962 -10.2363 0.2332 41 1 -0.7721 -6.4705 -2.6180 42 1 0.7712 -7.3612 -2.5626 43 1 0.9490 -5.1301 -3.7296 44 1 2.0208 -5.2731 -2.3151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053276232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:32 Heat of formation + Delta-G solvation = 56.846046 kcal Electronic energy + Delta-G solvation = -27464.569655 eV Core-core repulsion = 23772.000532 eV Total energy + Delta-G solvation = -3692.569123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.83958 -39.34698 -37.13629 -36.19349 -34.52084 -32.56521 -32.44722 -32.08422 -29.97823 -28.03545 -26.85376 -25.45281 -25.05637 -23.79952 -23.18624 -22.00193 -20.17933 -18.80277 -18.45391 -17.70869 -17.42927 -16.77043 -16.44515 -15.99373 -15.59320 -15.14313 -14.78159 -14.54573 -14.34873 -14.15172 -14.01725 -13.71443 -13.35286 -13.17811 -12.68888 -12.57206 -12.39302 -12.23088 -12.08300 -11.76519 -11.34150 -11.12268 -11.06575 -10.81116 -10.79317 -10.72253 -10.34128 -10.12641 -9.99000 -9.74232 -9.60796 -9.33729 -9.23124 -8.79290 -8.31701 -8.19513 -6.84333 -5.72111 -3.03698 1.12416 1.86375 2.69691 3.03169 3.14432 3.42992 3.47188 3.49370 4.09453 4.46245 4.49552 4.57033 4.74874 4.83971 4.91160 4.94791 4.98447 5.09045 5.12857 5.21814 5.25215 5.32651 5.44677 5.46876 5.62754 5.74925 5.77729 5.80125 5.81877 5.90912 6.10219 6.28845 6.34526 6.36032 6.44114 6.53084 6.60629 6.64781 6.65843 6.73955 6.99063 7.21576 7.50177 7.53554 7.85380 8.01816 8.29633 9.07730 9.74801 10.61704 11.45572 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.003348 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.942006 B = 8361.803900 C = 8573.508551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.103 3.897 11 C 0.053 3.947 12 C 0.182 3.818 13 C 0.101 3.899 14 N -0.606 5.606 15 C 0.527 3.473 16 O -0.530 6.530 17 C -0.048 4.048 18 C -0.147 4.147 19 C -0.106 4.106 20 C -0.149 4.149 21 C -0.073 4.073 22 C -0.104 4.104 23 C -0.127 4.127 24 C 0.075 3.925 25 C 0.043 3.957 26 O -0.335 6.335 27 H 0.254 0.746 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 -22.654 -5.018 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.024 4.024 11 C 0.012 3.988 12 C 0.056 3.944 13 C -0.022 4.022 14 N -0.340 5.340 15 C 0.314 3.686 16 O -0.406 6.406 17 C -0.069 4.069 18 C -0.165 4.165 19 C -0.124 4.124 20 C -0.167 4.167 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.048 4.048 25 C -0.035 4.035 26 O -0.253 6.253 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.499 -22.122 -4.455 22.616 hybrid contribution 0.594 0.673 0.099 0.903 sum -0.905 -21.449 -4.356 21.905 Atomic orbital electron populations 1.69794 1.04988 1.25332 1.56690 1.24750 0.95667 0.97422 1.02455 0.86118 0.78554 0.83472 0.77584 1.21544 1.21639 1.20757 1.18971 0.90166 0.81793 1.43803 0.90300 1.45821 1.01838 0.99070 1.86110 1.23026 0.95018 0.87215 0.97126 1.23732 0.97829 0.95703 0.81575 1.22252 0.88900 0.86732 0.96511 1.22248 0.98069 0.83062 0.98795 1.48096 1.63673 1.15483 1.06748 1.20330 0.77398 0.83211 0.87659 1.90685 1.54832 1.81370 1.13699 1.19221 0.98638 0.92972 0.96055 1.22899 0.93035 1.01943 0.98605 1.21097 0.96657 0.99302 0.95383 1.20993 1.00624 1.02935 0.92149 1.21045 0.93487 0.96005 0.98516 1.21007 0.93644 0.99376 0.98121 1.22698 0.99065 0.98247 0.94516 1.22486 1.02068 0.99741 0.80524 1.22908 0.96259 0.85616 0.98677 1.88050 1.78646 1.40520 1.18085 0.93627 0.94186 0.93928 0.89722 0.93833 0.88169 0.91125 0.87716 0.85962 0.86449 0.87139 0.86970 0.86584 0.86287 0.90644 0.89140 0.88169 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.77 11.41 55.49 0.63 -27.13 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -16.07 3.72 -179.07 -0.67 -16.73 16 10 C 0.10 2.24 8.07 -3.17 -0.03 2.22 16 11 C 0.05 1.06 1.21 -90.29 -0.11 0.95 16 12 C 0.18 4.40 6.92 -2.98 -0.02 4.38 16 13 C 0.10 1.69 5.78 -3.64 -0.02 1.67 16 14 N -0.61 -8.57 3.03 -172.43 -0.52 -9.09 16 15 C 0.53 7.48 5.44 -10.99 -0.06 7.42 16 16 O -0.53 -9.22 13.17 5.55 0.07 -9.15 16 17 C -0.05 -0.50 2.11 -94.47 -0.20 -0.70 16 18 C -0.15 -1.28 6.83 -36.43 -0.25 -1.53 16 19 C -0.11 -1.00 9.58 -38.75 -0.37 -1.37 16 20 C -0.15 -1.64 8.53 -38.65 -0.33 -1.97 16 21 C -0.07 -0.84 7.35 -38.65 -0.28 -1.13 16 22 C -0.10 -1.13 9.09 -38.75 -0.35 -1.48 16 23 C -0.13 -1.33 8.78 -36.43 -0.32 -1.65 16 24 C 0.08 0.85 5.73 -3.58 -0.02 0.83 16 25 C 0.04 0.59 6.88 37.28 0.26 0.85 16 26 O -0.34 -6.50 10.52 -35.23 -0.37 -6.87 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 28 H 0.04 0.88 7.94 -51.93 -0.41 0.46 16 29 H 0.04 0.91 7.27 -51.93 -0.38 0.53 16 30 H 0.08 2.28 7.19 -51.93 -0.37 1.91 16 31 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 0.91 7.69 -51.93 -0.40 0.51 16 35 H 0.12 0.75 7.86 -52.48 -0.41 0.34 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.75 4.97 -51.93 -0.26 0.49 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.74 7.19 -51.93 -0.37 0.37 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -34.56 347.17 -9.32 -43.88 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.31 Total: 0.61 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.36 Total: 1.67 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.55 Total: -52.96 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.30 Total: -16.01 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.56 -9.32 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053276232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.729 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds