Wall clock time and date at job start Tue Mar 31 2020 11:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48507 * 109.47285 * 270.00145 * 3 2 1 5 5 H 1.48499 * 109.47062 * 29.99935 * 3 2 1 6 6 H 1.48498 * 109.47350 * 150.00353 * 3 2 1 7 7 C 1.38811 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.47671 * 134.45791 * 179.97438 * 9 7 2 11 11 C 1.53466 * 86.10109 * 204.32187 * 10 9 7 12 12 C 1.48038 * 134.59926 * 0.04705 * 9 7 2 13 13 C 1.52888 * 113.50406 * 222.26221 * 11 10 9 14 14 N 1.47344 * 108.04784 * 277.00039 * 13 11 10 15 15 C 1.34770 * 121.05613 * 131.63644 * 14 13 11 16 16 O 1.21284 * 119.99667 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00184 * 179.97438 * 15 14 13 18 18 C 1.50289 * 109.46894 * 300.02693 * 17 15 14 19 19 C 1.32320 * 121.60063 * 303.32708 * 18 17 15 20 20 C 1.45197 * 123.00651 * 1.01435 * 19 18 17 21 21 C 1.32942 * 125.19744 * 319.52340 * 20 19 18 22 22 C 1.45202 * 125.20142 * 0.02813 * 21 20 19 23 23 C 1.32299 * 123.02177 * 40.42159 * 22 21 20 24 24 C 1.47126 * 117.89042 * 311.60985 * 14 13 11 25 25 C 1.53229 * 108.72921 * 52.22274 * 24 14 13 26 26 O 1.42483 * 113.76316 * 91.22526 * 11 10 9 27 27 H 0.97002 * 120.00542 * 359.97438 * 1 2 3 28 28 H 1.09002 * 113.79271 * 89.99681 * 10 9 7 29 29 H 1.09003 * 113.79473 * 318.64088 * 10 9 7 30 30 H 1.08997 * 113.79117 * 41.40660 * 12 9 7 31 31 H 1.09000 * 113.89458 * 269.95559 * 12 9 7 32 32 H 1.09004 * 109.74786 * 36.63624 * 13 11 10 33 33 H 1.09001 * 109.74948 * 157.36259 * 13 11 10 34 34 H 1.08998 * 109.46651 * 60.01542 * 17 15 14 35 35 H 1.08005 * 119.20276 * 123.31714 * 18 17 15 36 36 H 1.08001 * 118.50281 * 180.97570 * 19 18 17 37 37 H 1.08000 * 117.39886 * 139.55393 * 20 19 18 38 38 H 1.08002 * 117.39540 * 179.97438 * 21 20 19 39 39 H 1.07998 * 118.48846 * 220.41225 * 22 21 20 40 40 H 1.07994 * 119.19723 * 179.04560 * 23 22 21 41 41 H 1.09000 * 109.59563 * 292.44331 * 24 14 13 42 42 H 1.09006 * 109.59252 * 171.99088 * 24 14 13 43 43 H 1.09001 * 109.49421 * 185.91011 * 25 24 14 44 44 H 1.09004 * 109.49575 * 65.82506 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7214 -3.8108 0.0005 11 6 0.3492 -4.0841 -0.6301 12 6 -0.1070 -2.7613 -0.0008 13 6 -0.3546 -5.3114 -0.0505 14 7 0.1701 -6.5051 -0.7367 15 6 0.5752 -7.5855 -0.0404 16 8 0.5115 -7.5851 1.1708 17 6 1.1074 -8.7939 -0.7666 18 6 0.0486 -9.3312 -1.6879 19 6 -1.1450 -9.6861 -1.2402 20 6 -1.5341 -9.5680 0.1536 21 6 -0.7549 -9.8496 1.1933 22 6 0.6155 -10.3218 1.1085 23 6 1.4873 -9.8512 0.2317 24 6 0.2371 -6.4803 -2.2062 25 6 0.9830 -5.2153 -2.6435 26 8 0.3590 -4.0698 -2.0548 27 1 -0.4851 0.8400 0.0004 28 1 1.8392 -4.2344 0.9979 29 1 2.5604 -4.0338 -0.6585 30 1 -0.7203 -2.1487 -0.6615 31 1 -0.5351 -2.8727 0.9954 32 1 -0.1516 -5.3819 1.0182 33 1 -1.4289 -5.2330 -0.2175 34 1 1.9851 -8.5111 -1.3478 35 1 0.2670 -9.4300 -2.7410 36 1 -1.8628 -10.0811 -1.9439 37 1 -2.5366 -9.2244 0.3624 38 1 -1.1745 -9.7158 2.1794 39 1 0.9381 -11.0925 1.7928 40 1 2.4962 -10.2363 0.2332 41 1 -0.7721 -6.4705 -2.6180 42 1 0.7712 -7.3612 -2.5626 43 1 0.9490 -5.1301 -3.7296 44 1 2.0208 -5.2731 -2.3151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053276232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:31 Heat of formation + Delta-G solvation = 34.134155 kcal Electronic energy + Delta-G solvation = -27465.554516 eV Core-core repulsion = 23772.000532 eV Total energy + Delta-G solvation = -3693.553985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.97560 -40.70131 -38.18719 -37.65773 -35.79045 -34.29112 -33.28497 -33.18275 -31.43060 -29.40381 -28.29123 -26.88847 -26.67544 -24.74079 -24.30422 -23.65568 -21.39714 -20.25266 -19.39207 -18.82424 -18.54277 -18.19715 -17.57016 -17.30038 -16.93600 -16.72230 -16.18451 -15.86091 -15.65811 -15.19147 -15.11926 -15.02154 -14.87967 -14.48132 -14.13396 -13.83480 -13.50216 -13.31218 -13.17665 -12.96833 -12.94966 -12.79060 -12.67487 -12.45660 -12.06778 -11.93298 -11.81416 -11.69547 -11.38132 -11.13980 -11.00485 -10.83398 -10.76075 -10.12060 -9.48705 -9.09162 -8.95560 -7.91803 -5.25924 0.36855 1.10456 1.44131 1.47245 1.55511 1.67501 1.98730 2.31315 2.45239 2.70829 3.23002 3.32646 3.51293 3.62639 3.82815 3.86681 3.96978 4.07034 4.12633 4.17427 4.24120 4.27584 4.34266 4.47405 4.54787 4.57127 4.67028 4.70621 4.72026 4.79627 4.90895 4.98013 5.03048 5.08054 5.13555 5.19740 5.37681 5.44984 5.56898 5.69103 5.86783 5.87858 5.89066 5.95981 6.38720 6.46115 6.87791 7.22226 7.56943 8.50703 9.25400 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.003348 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.942006 B = 8361.803900 C = 8573.508551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.631 5.631 10 C 0.106 3.894 11 C 0.087 3.913 12 C 0.175 3.825 13 C 0.113 3.887 14 N -0.608 5.608 15 C 0.521 3.479 16 O -0.569 6.569 17 C -0.048 4.048 18 C -0.138 4.138 19 C -0.120 4.120 20 C -0.155 4.155 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.133 4.133 24 C 0.079 3.921 25 C 0.035 3.965 26 O -0.367 6.367 27 H 0.250 0.750 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 -24.533 -7.342 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.358 5.358 10 C -0.020 4.020 11 C 0.045 3.955 12 C 0.049 3.951 13 C -0.011 4.011 14 N -0.341 5.341 15 C 0.311 3.689 16 O -0.447 6.447 17 C -0.069 4.069 18 C -0.155 4.155 19 C -0.138 4.138 20 C -0.173 4.173 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.151 4.151 24 C -0.043 4.043 25 C -0.042 4.042 26 O -0.285 6.285 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.180 0.820 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.192 -24.050 -6.805 24.995 hybrid contribution 0.193 1.212 0.827 1.480 sum 0.001 -22.838 -5.977 23.608 Atomic orbital electron populations 1.69996 1.06479 1.25774 1.57779 1.25640 0.96610 1.00865 1.02553 0.85034 0.77561 0.78797 0.77623 1.20988 1.21800 1.19466 1.19372 0.90692 0.83231 1.43427 0.90087 1.46186 1.03075 1.00268 1.86270 1.23105 0.96682 0.84777 0.97423 1.23066 0.95651 0.94510 0.82281 1.22151 0.87680 0.89181 0.96066 1.21837 0.98136 0.83281 0.97856 1.48172 1.63453 1.14442 1.08022 1.21121 0.76457 0.83916 0.87441 1.90677 1.56237 1.82121 1.15715 1.19378 1.00107 0.91070 0.96346 1.23182 0.91789 1.00588 0.99978 1.21311 0.97875 1.00031 0.94572 1.21203 1.00394 1.02277 0.93430 1.21134 0.94467 0.97236 0.98349 1.21206 0.93398 1.00097 0.99036 1.23008 0.99914 0.97899 0.94244 1.22685 1.03136 0.99998 0.78456 1.23308 0.95978 0.84791 1.00137 1.87992 1.79459 1.43845 1.17205 0.94103 0.94174 0.93165 0.93140 0.94514 0.89919 0.90390 0.84867 0.82035 0.84226 0.87636 0.88252 0.85359 0.84038 0.89371 0.85054 0.85021 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.21 11.41 21.65 0.25 -58.96 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.24 -14.14 10.70 84.03 0.90 -13.24 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.63 -34.58 3.72 -724.85 -2.70 -37.28 16 10 C 0.11 4.65 8.07 86.31 0.70 5.35 16 11 C 0.09 3.45 1.21 -10.50 -0.01 3.44 16 12 C 0.17 8.85 6.92 86.22 0.60 9.44 16 13 C 0.11 3.76 5.78 86.18 0.50 4.26 16 14 N -0.61 -15.83 3.03 -817.83 -2.48 -18.31 16 15 C 0.52 13.75 5.44 87.66 0.48 14.23 16 16 O -0.57 -19.63 13.17 -3.04 -0.04 -19.67 16 17 C -0.05 -0.83 2.11 -13.29 -0.03 -0.86 16 18 C -0.14 -1.75 6.83 24.48 0.17 -1.58 16 19 C -0.12 -1.87 9.58 22.98 0.22 -1.65 16 20 C -0.15 -3.28 8.53 22.89 0.20 -3.08 16 21 C -0.09 -2.18 7.35 22.89 0.17 -2.01 16 22 C -0.12 -2.46 9.09 22.99 0.21 -2.25 16 23 C -0.13 -2.41 8.78 24.49 0.21 -2.20 16 24 C 0.08 1.46 5.73 86.34 0.49 1.96 16 25 C 0.03 0.83 6.88 72.06 0.50 1.33 16 26 O -0.37 -13.85 10.52 -148.98 -1.57 -15.42 16 27 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.04 1.78 7.94 -2.39 -0.02 1.76 16 29 H 0.05 2.12 7.27 -2.39 -0.02 2.10 16 30 H 0.05 2.87 7.19 -2.39 -0.02 2.85 16 31 H 0.04 1.87 8.09 -2.39 -0.02 1.85 16 32 H 0.08 3.06 6.91 -2.38 -0.02 3.04 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.13 1.57 7.69 -2.39 -0.02 1.55 16 35 H 0.16 0.85 7.86 -2.91 -0.02 0.82 16 36 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.11 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.10 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.13 1.38 4.97 -2.38 -0.01 1.36 16 43 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.05 1.25 7.19 -2.38 -0.02 1.23 16 Total: -1.00 -78.54 347.17 2.25 -76.29 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.99 Total: 14.40 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.76 Total: 9.84 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.92 Total: -114.55 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.61 Total: -35.09 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -78.54 2.25 -76.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053276232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.424 kcal (2) G-P(sol) polarization free energy of solvation -78.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds