Wall clock time and date at job start Tue Mar 31 2020 11:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48504 * 109.47006 * 274.98428 * 3 2 1 5 5 H 1.48494 * 109.47340 * 34.98617 * 3 2 1 6 6 H 1.48505 * 109.46784 * 154.98636 * 3 2 1 7 7 C 1.38806 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 171.25836 * 7 2 1 9 9 N 1.36944 * 120.00208 * 351.25829 * 7 2 1 10 10 C 1.48806 * 125.79679 * 170.34377 * 9 7 2 11 11 C 1.53065 * 105.63259 * 187.28460 * 10 9 7 12 12 H 1.08996 * 112.08037 * 86.81142 * 11 10 9 13 13 C 1.56052 * 98.63868 * 327.96532 * 11 10 9 14 14 H 1.08996 * 101.08794 * 299.11509 * 13 11 10 15 15 C 1.48498 * 102.84282 * 46.48819 * 13 11 10 16 16 C 1.48985 * 108.90087 * 190.18025 * 13 11 10 17 17 H 1.09005 * 114.62426 * 211.27583 * 16 13 11 18 18 C 1.57197 * 102.09111 * 85.45488 * 16 13 11 19 19 C 1.54509 * 105.79767 * 325.43634 * 18 16 13 20 20 C 1.53562 * 117.28785 * 218.41830 * 11 10 9 21 21 H 1.08995 * 113.20035 * 313.84429 * 20 11 10 22 22 C 1.55840 * 102.80398 * 190.06069 * 20 11 10 23 23 N 1.48348 * 105.71131 * 321.66902 * 22 20 11 24 24 C 1.34783 * 122.53657 * 145.79926 * 23 22 20 25 25 O 1.21693 * 119.99684 * 185.61974 * 24 23 22 26 26 C 1.46654 * 119.99801 * 5.62478 * 24 23 22 27 27 C 1.36547 * 125.98499 * 185.93845 * 26 24 23 28 28 C 1.40372 * 106.70697 * 179.85191 * 27 26 24 29 29 C 1.35129 * 107.11245 * 0.40693 * 28 27 26 30 30 O 1.33931 * 108.77226 * 359.74829 * 29 28 27 31 31 H 0.97005 * 120.00641 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.21218 * 68.24548 * 10 9 7 33 33 H 1.08998 * 110.21569 * 306.32546 * 10 9 7 34 34 H 1.09005 * 110.91944 * 199.08355 * 15 13 11 35 35 H 1.09004 * 110.92273 * 75.45750 * 15 13 11 36 36 H 1.08999 * 110.19443 * 85.53576 * 18 16 13 37 37 H 1.08999 * 110.19164 * 207.43882 * 18 16 13 38 38 H 1.08992 * 110.18038 * 202.57635 * 19 18 16 39 39 H 1.09007 * 107.90504 * 83.15853 * 19 18 16 40 40 H 1.09007 * 110.51242 * 202.36881 * 22 20 11 41 41 H 1.09006 * 109.78113 * 80.58072 * 22 20 11 42 42 H 1.07999 * 126.64743 * 359.96083 * 27 26 24 43 43 H 1.08000 * 126.44381 * 180.15814 * 28 27 26 44 44 H 1.07999 * 125.61402 * 179.78132 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0808 -1.2074 -0.1427 9 7 1.3375 -2.3813 0.1792 10 6 1.9078 -3.7443 0.0026 11 6 0.7250 -4.7067 0.1356 12 1 0.2124 -4.8596 -0.8141 13 6 -0.1284 -3.8898 1.1552 14 1 0.5518 -3.8400 2.0054 15 6 -0.0972 -2.5180 0.5874 16 6 -1.2464 -4.7450 1.6433 17 1 -2.1564 -4.2014 1.8977 18 6 -0.5692 -5.5293 2.8254 19 6 0.8959 -5.7598 2.3925 20 6 0.9734 -6.0297 0.8745 21 1 1.8894 -6.5309 0.5616 22 6 -0.3286 -6.8361 0.5863 23 7 -1.4337 -5.8480 0.6420 24 6 -2.5236 -5.9342 -0.1462 25 8 -3.3539 -5.0446 -0.1358 26 6 -2.7089 -7.1001 -1.0163 27 6 -3.6998 -7.2611 -1.9418 28 6 -3.4920 -8.5130 -2.5418 29 6 -2.4026 -9.0583 -1.9572 30 8 -1.9335 -8.2040 -1.0385 31 1 -0.4851 0.8400 -0.0004 32 1 2.6470 -3.9466 0.7777 33 1 2.3606 -3.8382 -0.9844 34 1 -0.3589 -1.7777 1.3435 35 1 -0.7569 -2.4393 -0.2768 36 1 -0.6184 -4.9430 3.7430 37 1 -1.0584 -6.4930 2.9666 38 1 1.3191 -6.6061 2.9333 39 1 1.4613 -4.8585 2.6298 40 1 -0.4745 -7.6086 1.3415 41 1 -0.2728 -7.2846 -0.4056 42 1 -4.4893 -6.5603 -2.1695 43 1 -4.0926 -8.9586 -3.3211 44 1 -1.9795 -10.0237 -2.1924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089750066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:02 Heat of formation + Delta-G solvation = 69.991798 kcal Electronic energy + Delta-G solvation = -27888.922119 eV Core-core repulsion = 24196.923039 eV Total energy + Delta-G solvation = -3691.999080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.79615 -41.47598 -38.44653 -35.91305 -33.40926 -32.79286 -31.87596 -31.53336 -29.80458 -28.89800 -26.91517 -25.66313 -24.59473 -23.02489 -22.02168 -21.64941 -20.94052 -20.12318 -19.91083 -17.98051 -17.17962 -16.93783 -16.56734 -16.37160 -15.89012 -15.34517 -15.12851 -14.39793 -14.03863 -13.64722 -13.46952 -13.30999 -13.21069 -12.97433 -12.90774 -12.72683 -12.53176 -12.12178 -11.88967 -11.64815 -11.39471 -11.19513 -10.89669 -10.79666 -10.73152 -10.58954 -10.20227 -10.15151 -10.05566 -9.90566 -9.63710 -9.36595 -9.18556 -8.84553 -8.53803 -8.37041 -6.76005 -5.66972 -3.00183 1.05116 2.26260 2.58020 3.05394 3.31326 3.43337 3.48494 3.50901 4.39336 4.50017 4.55619 4.76566 4.78397 4.83045 4.91405 5.04084 5.18183 5.32964 5.38473 5.43799 5.51050 5.55557 5.59692 5.65611 5.67674 5.78307 5.82577 5.95562 6.03437 6.07334 6.15616 6.20619 6.22515 6.30807 6.33768 6.47076 6.57476 6.69420 6.79767 7.00960 7.04773 7.51959 7.57565 7.67167 7.85066 8.18605 8.25218 9.21036 9.84489 10.54086 11.46225 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.004021 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.072710 B = 6962.172119 C = 7491.116337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.608 5.608 10 C 0.142 3.858 11 C -0.098 4.098 12 H 0.075 0.925 13 C -0.161 4.161 14 H 0.078 0.922 15 C 0.202 3.798 16 C 0.178 3.822 17 H 0.118 0.882 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.089 4.089 21 H 0.099 0.901 22 C 0.113 3.887 23 N -0.603 5.603 24 C 0.600 3.400 25 O -0.518 6.518 26 C -0.065 4.065 27 C -0.129 4.129 28 C -0.223 4.223 29 C -0.021 4.021 30 O -0.160 6.160 31 H 0.252 0.748 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -21.218 1.424 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.335 5.335 10 C 0.017 3.983 11 C -0.117 4.117 12 H 0.094 0.906 13 C -0.180 4.180 14 H 0.096 0.904 15 C 0.078 3.922 16 C 0.077 3.923 17 H 0.136 0.864 18 C -0.169 4.169 19 C -0.160 4.160 20 C -0.109 4.109 21 H 0.117 0.883 22 C -0.009 4.009 23 N -0.337 5.337 24 C 0.387 3.613 25 O -0.396 6.396 26 C -0.117 4.117 27 C -0.150 4.150 28 C -0.243 4.243 29 C -0.090 4.090 30 O -0.055 6.055 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.176 0.824 43 H 0.171 0.829 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.314 -20.531 1.647 20.862 hybrid contribution 0.345 0.717 -0.469 0.924 sum -2.969 -19.813 1.178 20.069 Atomic orbital electron populations 1.69971 1.04890 1.25089 1.56273 1.24811 0.95584 0.97652 1.02297 0.86164 0.78692 0.83805 0.77463 1.21711 1.21649 1.20683 1.19013 0.90859 0.82768 1.43134 0.90715 1.45535 1.08055 0.99487 1.80451 1.21223 0.93476 0.86047 0.97586 1.22449 0.98135 0.93076 0.98079 0.90627 1.22039 0.96778 0.98238 1.00991 0.90423 1.20011 0.85412 0.89248 0.97483 1.21880 0.98308 0.86365 0.85734 0.86398 1.23240 0.95649 1.00198 0.97810 1.22238 0.96661 1.01887 0.95175 1.22432 0.96629 0.96565 0.95230 0.88280 1.22678 0.85887 0.90258 1.02126 1.49589 1.18584 1.27634 1.37856 1.16581 0.82191 0.83423 0.79111 1.90901 1.44153 1.37998 1.66569 1.22306 0.95702 0.89268 1.04459 1.21981 0.99342 0.97803 0.95827 1.21835 1.00768 0.96644 1.05008 1.24396 0.96856 0.96108 0.91675 1.84232 1.47557 1.24565 1.49157 0.93724 0.95910 0.95604 0.91465 0.95539 0.90274 0.91401 0.91903 0.90499 0.91176 0.89861 0.82358 0.82856 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 10.72 55.49 0.59 -27.15 16 2 C -0.01 -0.19 5.43 -17.43 -0.09 -0.28 16 3 Si 0.91 22.50 29.56 -169.99 -5.03 17.48 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.54 10.27 -15.06 -0.15 -6.70 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.61 -15.89 3.48 -171.13 -0.59 -16.49 16 10 C 0.14 2.98 6.73 -2.73 -0.02 2.96 16 11 C -0.10 -1.73 2.62 -88.66 -0.23 -1.97 16 12 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.16 -3.05 2.52 -93.15 -0.23 -3.29 16 14 H 0.08 1.46 4.05 -51.93 -0.21 1.25 16 15 C 0.20 5.07 5.24 -4.40 -0.02 5.05 16 16 C 0.18 2.86 4.49 -65.58 -0.29 2.57 16 17 H 0.12 2.01 7.77 -51.93 -0.40 1.60 16 18 C -0.13 -1.62 5.61 -23.66 -0.13 -1.75 16 19 C -0.12 -1.48 5.28 -25.22 -0.13 -1.61 16 20 C -0.09 -1.15 4.11 -88.10 -0.36 -1.51 16 21 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 22 C 0.11 1.37 4.67 -1.51 -0.01 1.37 16 23 N -0.60 -9.20 2.11 -161.22 -0.34 -9.53 16 24 C 0.60 10.17 7.73 -12.86 -0.10 10.07 16 25 O -0.52 -10.58 16.81 5.20 0.09 -10.49 16 26 C -0.07 -0.93 6.79 -36.80 -0.25 -1.18 16 27 C -0.13 -1.64 10.63 -39.39 -0.42 -2.06 16 28 C -0.22 -2.14 10.88 -39.89 -0.43 -2.57 16 29 C -0.02 -0.18 12.08 29.63 0.36 0.18 16 30 O -0.16 -1.84 7.61 4.98 0.04 -1.80 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.02 0.46 7.99 -51.93 -0.42 0.04 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.85 7.11 -51.93 -0.37 1.48 16 35 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.75 7.14 -51.93 -0.37 0.38 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.08 6.23 -51.93 -0.32 0.76 16 40 H 0.07 0.73 7.18 -51.92 -0.37 0.36 16 41 H 0.08 1.00 5.73 -51.93 -0.30 0.70 16 42 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 43 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -34.02 338.43 -8.75 -42.77 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.08 Total: 0.86 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.53 Total: -0.73 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.34 Total: -53.17 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.13 Total: -12.30 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.02 -8.75 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089750066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.764 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds