Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48504 * 109.47006 * 274.98428 * 3 2 1 5 5 H 1.48494 * 109.47340 * 34.98617 * 3 2 1 6 6 H 1.48505 * 109.46784 * 154.98636 * 3 2 1 7 7 C 1.38806 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 171.25836 * 7 2 1 9 9 N 1.36944 * 120.00208 * 351.25829 * 7 2 1 10 10 C 1.48806 * 125.79679 * 170.34377 * 9 7 2 11 11 C 1.53065 * 105.63259 * 187.28460 * 10 9 7 12 12 H 1.08996 * 112.08037 * 86.81142 * 11 10 9 13 13 C 1.56052 * 98.63868 * 327.96532 * 11 10 9 14 14 H 1.08996 * 101.08794 * 299.11509 * 13 11 10 15 15 C 1.48498 * 102.84282 * 46.48819 * 13 11 10 16 16 C 1.48985 * 108.90087 * 190.18025 * 13 11 10 17 17 H 1.09005 * 114.62426 * 211.27583 * 16 13 11 18 18 C 1.57197 * 102.09111 * 85.45488 * 16 13 11 19 19 C 1.54509 * 105.79767 * 325.43634 * 18 16 13 20 20 C 1.53562 * 117.28785 * 218.41830 * 11 10 9 21 21 H 1.08995 * 113.20035 * 313.84429 * 20 11 10 22 22 C 1.55840 * 102.80398 * 190.06069 * 20 11 10 23 23 N 1.48348 * 105.71131 * 321.66902 * 22 20 11 24 24 C 1.34783 * 122.53657 * 145.79926 * 23 22 20 25 25 O 1.21693 * 119.99684 * 185.61974 * 24 23 22 26 26 C 1.46654 * 119.99801 * 5.62478 * 24 23 22 27 27 C 1.36547 * 125.98499 * 185.93845 * 26 24 23 28 28 C 1.40372 * 106.70697 * 179.85191 * 27 26 24 29 29 C 1.35129 * 107.11245 * 0.40693 * 28 27 26 30 30 O 1.33931 * 108.77226 * 359.74829 * 29 28 27 31 31 H 0.97005 * 120.00641 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.21218 * 68.24548 * 10 9 7 33 33 H 1.08998 * 110.21569 * 306.32546 * 10 9 7 34 34 H 1.09005 * 110.91944 * 199.08355 * 15 13 11 35 35 H 1.09004 * 110.92273 * 75.45750 * 15 13 11 36 36 H 1.08999 * 110.19443 * 85.53576 * 18 16 13 37 37 H 1.08999 * 110.19164 * 207.43882 * 18 16 13 38 38 H 1.08992 * 110.18038 * 202.57635 * 19 18 16 39 39 H 1.09007 * 107.90504 * 83.15853 * 19 18 16 40 40 H 1.09007 * 110.51242 * 202.36881 * 22 20 11 41 41 H 1.09006 * 109.78113 * 80.58072 * 22 20 11 42 42 H 1.07999 * 126.64743 * 359.96083 * 27 26 24 43 43 H 1.08000 * 126.44381 * 180.15814 * 28 27 26 44 44 H 1.07999 * 125.61402 * 179.78132 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0808 -1.2074 -0.1427 9 7 1.3375 -2.3813 0.1792 10 6 1.9078 -3.7443 0.0026 11 6 0.7250 -4.7067 0.1356 12 1 0.2124 -4.8596 -0.8141 13 6 -0.1284 -3.8898 1.1552 14 1 0.5518 -3.8400 2.0054 15 6 -0.0972 -2.5180 0.5874 16 6 -1.2464 -4.7450 1.6433 17 1 -2.1564 -4.2014 1.8977 18 6 -0.5692 -5.5293 2.8254 19 6 0.8959 -5.7598 2.3925 20 6 0.9734 -6.0297 0.8745 21 1 1.8894 -6.5309 0.5616 22 6 -0.3286 -6.8361 0.5863 23 7 -1.4337 -5.8480 0.6420 24 6 -2.5236 -5.9342 -0.1462 25 8 -3.3539 -5.0446 -0.1358 26 6 -2.7089 -7.1001 -1.0163 27 6 -3.6998 -7.2611 -1.9418 28 6 -3.4920 -8.5130 -2.5418 29 6 -2.4026 -9.0583 -1.9572 30 8 -1.9335 -8.2040 -1.0385 31 1 -0.4851 0.8400 -0.0004 32 1 2.6470 -3.9466 0.7777 33 1 2.3606 -3.8382 -0.9844 34 1 -0.3589 -1.7777 1.3435 35 1 -0.7569 -2.4393 -0.2768 36 1 -0.6184 -4.9430 3.7430 37 1 -1.0584 -6.4930 2.9666 38 1 1.3191 -6.6061 2.9333 39 1 1.4613 -4.8585 2.6298 40 1 -0.4745 -7.6086 1.3415 41 1 -0.2728 -7.2846 -0.4056 42 1 -4.4893 -6.5603 -2.1695 43 1 -4.0926 -8.9586 -3.3211 44 1 -1.9795 -10.0237 -2.1924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089750066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = 48.123796 kcal Electronic energy + Delta-G solvation = -27889.870387 eV Core-core repulsion = 24196.923039 eV Total energy + Delta-G solvation = -3692.947348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.67911 -42.74847 -39.80030 -37.60645 -34.67728 -34.02471 -33.49368 -32.81282 -30.76054 -30.67165 -28.56630 -27.12728 -26.11962 -24.11761 -23.29299 -22.68047 -22.28717 -21.63450 -21.12396 -19.09962 -18.83663 -18.42058 -17.82748 -17.37672 -17.23470 -16.68282 -16.47072 -16.10613 -15.42333 -15.08577 -14.98195 -14.49059 -14.38972 -14.29378 -14.09377 -13.95023 -13.73687 -13.51613 -13.29449 -13.06490 -12.88766 -12.75119 -12.53811 -12.45799 -12.25797 -11.99855 -11.83691 -11.79819 -11.47414 -11.36084 -11.02150 -10.92773 -10.76316 -10.47413 -9.85455 -9.49169 -8.92676 -7.89220 -5.25788 0.07406 1.42440 1.44955 1.46145 1.54903 1.56941 2.02663 2.16749 2.46407 3.24179 3.33824 3.41977 3.46008 3.64581 3.69873 3.96920 4.02299 4.11453 4.14585 4.27045 4.28556 4.35275 4.44148 4.58216 4.65292 4.68498 4.74896 4.83338 4.87890 4.89485 4.95141 4.97171 5.05701 5.07253 5.19939 5.24164 5.35148 5.36572 5.41048 5.46414 5.52005 5.57719 5.74525 5.91427 6.10665 6.38290 6.95572 6.99001 7.68358 8.39237 9.23370 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.004021 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.072710 B = 6962.172119 C = 7491.116337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.084 0.916 9 N -0.631 5.631 10 C 0.138 3.862 11 C -0.085 4.085 12 H 0.049 0.951 13 C -0.156 4.156 14 H 0.088 0.912 15 C 0.215 3.785 16 C 0.166 3.834 17 H 0.093 0.907 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.075 4.075 21 H 0.134 0.866 22 C 0.114 3.886 23 N -0.602 5.602 24 C 0.590 3.410 25 O -0.577 6.577 26 C -0.100 4.100 27 C -0.137 4.137 28 C -0.235 4.235 29 C 0.010 3.990 30 O -0.158 6.158 31 H 0.246 0.754 32 H 0.046 0.954 33 H 0.021 0.979 34 H 0.029 0.971 35 H -0.029 1.029 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.147 0.853 43 H 0.182 0.818 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -25.599 2.059 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.359 5.359 10 C 0.015 3.985 11 C -0.104 4.104 12 H 0.068 0.932 13 C -0.176 4.176 14 H 0.106 0.894 15 C 0.090 3.910 16 C 0.064 3.936 17 H 0.111 0.889 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.094 4.094 21 H 0.152 0.848 22 C -0.007 4.007 23 N -0.334 5.334 24 C 0.379 3.621 25 O -0.459 6.459 26 C -0.152 4.152 27 C -0.158 4.158 28 C -0.253 4.253 29 C -0.059 4.059 30 O -0.054 6.054 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.047 0.953 35 H -0.011 1.011 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.933 -24.970 2.290 25.092 hybrid contribution -0.390 2.014 -0.802 2.202 sum -1.323 -22.956 1.488 23.043 Atomic orbital electron populations 1.70227 1.06739 1.25384 1.57844 1.25746 0.96411 1.01411 1.02581 0.85036 0.77953 0.78914 0.77258 1.21528 1.22011 1.18715 1.19484 0.91547 0.84060 1.42190 0.89838 1.45908 1.08273 1.01154 1.80536 1.21429 0.94977 0.84303 0.97842 1.22372 0.95674 0.95318 0.97084 0.93244 1.21834 0.98953 0.95319 1.01496 0.89426 1.19609 0.84532 0.92445 0.94398 1.21877 0.96754 0.86911 0.88074 0.88857 1.23194 0.95719 1.00600 0.95891 1.22249 0.95845 1.02743 0.94683 1.22523 0.98461 0.93285 0.95124 0.84822 1.22934 0.83973 0.89934 1.03835 1.49709 1.19006 1.27682 1.37009 1.17035 0.81990 0.83848 0.79219 1.90852 1.46174 1.40375 1.68515 1.21701 0.97668 0.90014 1.05821 1.22219 0.98628 0.99163 0.95747 1.22174 1.01933 0.95271 1.05947 1.25469 0.95302 0.96407 0.88740 1.84198 1.47163 1.23988 1.50036 0.94481 0.93598 0.96094 0.95258 1.01120 0.89368 0.88945 0.87540 0.92482 0.87598 0.89230 0.83552 0.80060 0.72383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.73 10.72 21.65 0.23 -61.50 16 2 C -0.07 -4.12 5.43 84.86 0.46 -3.65 16 3 Si 0.98 47.73 29.56 68.60 2.03 49.76 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -14.37 10.27 84.03 0.86 -13.51 16 8 H 0.08 4.65 7.84 -2.91 -0.02 4.63 16 9 N -0.63 -34.54 3.48 -695.34 -2.42 -36.95 16 10 C 0.14 5.82 6.73 85.96 0.58 6.40 16 11 C -0.08 -2.99 2.62 -9.52 -0.02 -3.02 16 12 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 13 C -0.16 -6.21 2.52 -12.43 -0.03 -6.25 16 14 H 0.09 3.32 4.05 -2.39 -0.01 3.31 16 15 C 0.21 11.71 5.24 84.32 0.44 12.15 16 16 C 0.17 5.49 4.49 44.48 0.20 5.69 16 17 H 0.09 3.51 7.77 -2.38 -0.02 3.49 16 18 C -0.12 -2.55 5.61 32.58 0.18 -2.37 16 19 C -0.12 -2.34 5.28 31.57 0.17 -2.18 16 20 C -0.08 -1.65 4.11 -9.16 -0.04 -1.69 16 21 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 22 C 0.11 2.38 4.67 87.01 0.41 2.78 16 23 N -0.60 -18.31 2.11 -782.19 -1.65 -19.96 16 24 C 0.59 20.99 7.73 86.44 0.67 21.66 16 25 O -0.58 -25.89 16.81 -4.33 -0.07 -25.96 16 26 C -0.10 -2.83 6.79 24.07 0.16 -2.67 16 27 C -0.14 -3.49 10.63 22.39 0.24 -3.25 16 28 C -0.23 -3.83 10.88 22.07 0.24 -3.59 16 29 C 0.01 0.13 12.08 67.10 0.81 0.94 16 30 O -0.16 -3.16 7.61 -5.10 -0.04 -3.20 16 31 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 32 H 0.05 1.75 7.99 -2.39 -0.02 1.73 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.03 1.77 7.11 -2.38 -0.02 1.75 16 35 H -0.03 -1.88 8.07 -2.39 -0.02 -1.90 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.64 7.14 -2.39 -0.02 1.62 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.42 6.23 -2.38 -0.01 1.40 16 40 H 0.11 1.58 7.18 -2.38 -0.02 1.56 16 41 H 0.09 1.82 5.73 -2.38 -0.01 1.81 16 42 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.26 0.31 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -84.49 338.43 4.42 -80.07 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.01 Total: 10.29 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.33 Total: 7.45 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -3.83 Total: -118.41 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.11 Total: -29.16 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -84.49 4.42 -80.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089750066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.190 kcal (2) G-P(sol) polarization free energy of solvation -84.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds