Wall clock time and date at job start Tue Mar 31 2020 11:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48503 * 109.47153 * 239.99997 * 3 2 1 5 5 H 1.48495 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46930 * 120.00396 * 3 2 1 7 7 C 1.38808 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.83485 * 359.66502 * 9 7 2 11 11 H 1.09000 * 115.85897 * 359.89960 * 10 9 7 12 12 C 1.55841 * 101.04965 * 234.22730 * 10 9 7 13 13 C 1.54849 * 103.44603 * 327.06148 * 12 10 9 14 14 C 1.50236 * 130.84045 * 180.02562 * 9 7 2 15 15 H 1.08996 * 115.85840 * 0.09825 * 14 9 7 16 16 C 1.55849 * 101.04741 * 233.70801 * 14 9 7 17 17 H 1.09006 * 110.62296 * 85.55810 * 16 14 9 18 18 N 1.46504 * 110.62355 * 208.57171 * 16 14 9 19 19 C 1.34786 * 119.99809 * 274.05932 * 18 16 14 20 20 O 1.21282 * 119.99760 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99529 * 179.97438 * 19 18 16 22 22 H 1.08999 * 115.54955 * 34.33517 * 21 19 18 23 23 C 1.52999 * 117.50321 * 248.62464 * 21 19 18 24 24 C 1.53006 * 117.49618 * 179.97438 * 21 19 18 25 25 H 1.08994 * 117.49591 * 0.02562 * 24 21 19 26 26 C 1.50702 * 117.49974 * 215.00345 * 24 21 19 27 27 C 1.34511 * 125.78668 * 120.00049 * 26 24 21 28 28 C 1.41385 * 106.84215 * 180.02562 * 27 26 24 29 29 C 1.34520 * 106.83825 * 0.02562 * 28 27 26 30 30 O 1.34298 * 125.78847 * 299.69844 * 26 24 21 31 31 C 1.54849 * 103.44771 * 327.06341 * 16 14 9 32 32 H 0.97000 * 119.99619 * 0.02562 * 1 2 3 33 33 H 1.09006 * 110.62312 * 208.57433 * 12 10 9 34 34 H 1.09003 * 110.62866 * 85.55079 * 12 10 9 35 35 H 1.09007 * 110.62816 * 241.51298 * 13 12 10 36 36 H 1.09002 * 110.76735 * 118.55614 * 13 12 10 37 37 H 0.96991 * 119.99898 * 94.06470 * 18 16 14 38 38 H 1.09003 * 117.49573 * 359.97438 * 23 21 19 39 39 H 1.08998 * 117.50350 * 145.02607 * 23 21 19 40 40 H 1.08000 * 126.58110 * 0.03871 * 27 26 24 41 41 H 1.07995 * 126.58364 * 179.97438 * 28 27 26 42 42 H 1.07998 * 125.78695 * 180.02562 * 29 28 27 43 43 H 1.09003 * 110.62342 * 241.51305 * 31 16 14 44 44 H 1.08994 * 110.62872 * 118.49171 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1500 -2.6705 0.0066 11 1 -0.8013 -1.7966 0.0146 12 6 -0.2685 -3.6088 1.2453 13 6 1.0725 -4.3830 1.2401 14 6 1.8187 -3.8072 -0.0005 15 1 2.9012 -3.9343 0.0011 16 6 1.0615 -4.3865 -1.2334 17 1 1.6155 -4.1897 -2.1514 18 7 0.8285 -5.8233 -1.0675 19 6 1.7768 -6.7069 -1.4371 20 8 2.8232 -6.3124 -1.9065 21 6 1.5373 -8.1848 -1.2659 22 1 0.5084 -8.5141 -1.4108 23 6 2.3733 -8.9190 -0.2157 24 6 2.6519 -9.1366 -1.7049 25 1 3.5585 -8.6937 -2.1171 26 6 2.2431 -10.4577 -2.3038 27 6 2.5503 -10.8895 -3.5401 28 6 1.9681 -12.1699 -3.6833 29 6 1.3394 -12.4437 -2.5259 30 8 1.5151 -11.4058 -1.6917 31 6 -0.2795 -3.6122 -1.2288 32 1 -0.4849 0.8401 -0.0004 33 1 -1.1081 -4.2942 1.1289 34 1 -0.3716 -3.0255 2.1604 35 1 0.8980 -5.4525 1.1212 36 1 1.6359 -4.1863 2.1523 37 1 -0.0083 -6.1386 -0.6918 38 1 3.0969 -8.3331 0.3511 39 1 1.8944 -9.7316 0.3307 40 1 3.1306 -10.3599 -4.2812 41 1 2.0177 -12.8058 -4.5548 42 1 0.7915 -13.3474 -2.3033 43 1 -1.1179 -4.2972 -1.1031 44 1 -0.3907 -3.0315 -2.1445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096043534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:05 Heat of formation + Delta-G solvation = 56.925414 kcal Electronic energy + Delta-G solvation = -26217.812806 eV Core-core repulsion = 22525.247125 eV Total energy + Delta-G solvation = -3692.565681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81216 -40.17419 -38.76896 -36.46625 -33.91584 -33.21602 -32.31934 -29.83428 -29.28725 -29.02511 -27.70725 -24.77738 -23.78638 -23.36036 -21.90575 -21.30725 -20.49990 -20.06345 -19.45497 -18.54240 -17.88718 -17.26200 -16.78832 -16.18538 -15.58696 -15.21624 -15.02590 -14.74937 -14.25870 -14.11796 -13.83075 -13.33571 -13.03942 -12.89270 -12.69029 -12.32075 -12.27344 -12.10995 -11.76573 -11.50924 -11.17710 -11.05940 -10.91146 -10.89760 -10.82038 -10.72631 -10.21298 -10.12423 -10.11136 -9.85509 -9.67243 -9.37972 -9.24891 -8.92890 -8.58535 -8.50017 -6.91536 -5.72640 -3.10635 1.41466 2.32715 2.65182 2.71162 3.36680 3.41479 3.44913 3.46482 3.72790 4.27812 4.45682 4.48158 4.63578 4.77546 4.83313 5.03262 5.07360 5.21347 5.38476 5.41921 5.54439 5.57807 5.67127 5.72959 5.80658 5.84269 5.85325 5.87955 5.97224 6.06942 6.12239 6.25716 6.30725 6.33976 6.53806 6.60907 6.68291 6.81003 6.90618 6.96648 7.00020 7.27098 7.52193 7.74110 7.84380 8.17028 8.48012 9.10599 9.73171 10.53542 11.36977 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.032839 B = 0.002595 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.432409 B =10788.685399 C =11038.546640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.210 4.210 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.137 4.137 13 C -0.131 4.131 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.082 0.918 18 N -0.705 5.705 19 C 0.539 3.461 20 O -0.542 6.542 21 C -0.172 4.172 22 H 0.124 0.876 23 C -0.137 4.137 24 C -0.052 4.052 25 H 0.148 0.852 26 C 0.021 3.979 27 C -0.203 4.203 28 C -0.212 4.212 29 C -0.045 4.045 30 O -0.176 6.176 31 C -0.140 4.140 32 H 0.254 0.746 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.202 0.798 43 H 0.054 0.946 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -22.681 -2.508 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.338 4.338 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.177 4.177 13 C -0.171 4.171 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.100 0.900 18 N -0.355 5.355 19 C 0.324 3.676 20 O -0.419 6.419 21 C -0.194 4.194 22 H 0.142 0.858 23 C -0.174 4.174 24 C -0.070 4.070 25 H 0.166 0.834 26 C -0.029 4.029 27 C -0.222 4.222 28 C -0.231 4.231 29 C -0.113 4.113 30 O -0.072 6.072 31 C -0.180 4.180 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.231 0.769 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.219 0.781 43 H 0.073 0.927 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.442 -21.969 -2.559 22.122 hybrid contribution 0.008 0.394 -0.130 0.415 sum -0.434 -21.576 -2.689 21.747 Atomic orbital electron populations 1.69425 1.04991 1.25094 1.57745 1.24697 0.95655 0.97510 1.02894 0.86100 0.78371 0.82840 0.77902 1.21201 1.21585 1.21266 1.19019 0.90353 0.81882 1.42571 0.90365 1.46474 1.01589 0.98813 1.84159 1.23773 0.87720 0.95173 0.88609 0.82858 1.23060 0.95139 0.98189 1.01304 1.22915 0.97608 0.97647 0.98882 1.23182 0.96186 0.86109 0.92588 0.89705 1.22645 0.98160 0.76698 1.00266 0.89993 1.46151 1.18905 1.07164 1.63285 1.19419 0.83999 0.86315 0.77868 1.90703 1.26141 1.80129 1.44943 1.22420 0.98372 0.91711 1.06857 0.85783 1.23089 1.01701 1.01828 0.90818 1.20504 1.00056 0.88457 0.98008 0.83423 1.21402 0.98104 0.90779 0.92609 1.21579 1.06312 0.97021 0.97277 1.21850 1.03382 0.98106 0.99808 1.24013 1.04853 0.92430 0.89967 1.83975 1.57447 1.24289 1.41502 1.23288 0.93917 0.98424 1.02383 0.93514 0.93655 0.92680 0.93011 0.93131 0.76943 0.87068 0.87238 0.83278 0.83429 0.78096 0.92709 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.14 10.47 55.49 0.58 -25.56 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.80 10.59 -15.06 -0.16 -5.96 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.59 -14.65 2.99 -145.82 -0.44 -15.09 16 10 C 0.15 3.44 4.72 -62.78 -0.30 3.14 16 11 H 0.15 3.93 5.52 -51.93 -0.29 3.64 16 12 C -0.14 -2.63 6.44 -24.24 -0.16 -2.78 16 13 C -0.13 -2.39 6.32 -24.26 -0.15 -2.54 16 14 C 0.13 2.68 5.35 -62.82 -0.34 2.35 16 15 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 16 C 0.13 2.38 3.07 -65.43 -0.20 2.18 16 17 H 0.08 1.72 7.71 -51.93 -0.40 1.32 16 18 N -0.71 -10.25 3.63 -51.39 -0.19 -10.44 16 19 C 0.54 8.00 7.61 -10.98 -0.08 7.91 16 20 O -0.54 -10.15 15.99 5.56 0.09 -10.06 16 21 C -0.17 -1.92 5.89 -91.77 -0.54 -2.46 16 22 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 23 C -0.14 -1.34 9.87 -26.70 -0.26 -1.60 16 24 C -0.05 -0.57 5.75 -91.74 -0.53 -1.09 16 25 H 0.15 1.72 7.67 -51.93 -0.40 1.32 16 26 C 0.02 0.23 6.80 -35.62 -0.24 -0.01 16 27 C -0.20 -2.09 10.81 -39.70 -0.43 -2.52 16 28 C -0.21 -1.85 10.91 -39.70 -0.43 -2.28 16 29 C -0.05 -0.37 12.09 29.42 0.36 -0.01 16 30 O -0.18 -1.82 10.36 5.70 0.06 -1.76 16 31 C -0.14 -2.64 6.20 -24.22 -0.15 -2.79 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.80 6.48 -51.93 -0.34 0.47 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.72 8.02 -40.82 -0.33 4.39 16 38 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.11 0.92 7.96 -51.93 -0.41 0.51 16 40 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.05 0.86 7.34 -51.93 -0.38 0.48 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -31.55 359.91 -9.51 -41.06 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.30 Total: 8.34 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.71 Total: -8.92 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.04 Total: -51.09 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.15 Total: -11.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.55 -9.51 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096043534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.984 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds