Wall clock time and date at job start Tue Mar 31 2020 11:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48503 * 109.47153 * 239.99997 * 3 2 1 5 5 H 1.48495 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46930 * 120.00396 * 3 2 1 7 7 C 1.38808 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.83485 * 359.66502 * 9 7 2 11 11 H 1.09000 * 115.85897 * 359.89960 * 10 9 7 12 12 C 1.55841 * 101.04965 * 234.22730 * 10 9 7 13 13 C 1.54849 * 103.44603 * 327.06148 * 12 10 9 14 14 C 1.50236 * 130.84045 * 180.02562 * 9 7 2 15 15 H 1.08996 * 115.85840 * 0.09825 * 14 9 7 16 16 C 1.55849 * 101.04741 * 233.70801 * 14 9 7 17 17 H 1.09006 * 110.62296 * 85.55810 * 16 14 9 18 18 N 1.46504 * 110.62355 * 208.57171 * 16 14 9 19 19 C 1.34786 * 119.99809 * 274.05932 * 18 16 14 20 20 O 1.21282 * 119.99760 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99529 * 179.97438 * 19 18 16 22 22 H 1.08999 * 115.54955 * 34.33517 * 21 19 18 23 23 C 1.52999 * 117.50321 * 248.62464 * 21 19 18 24 24 C 1.53006 * 117.49618 * 179.97438 * 21 19 18 25 25 H 1.08994 * 117.49591 * 0.02562 * 24 21 19 26 26 C 1.50702 * 117.49974 * 215.00345 * 24 21 19 27 27 C 1.34511 * 125.78668 * 120.00049 * 26 24 21 28 28 C 1.41385 * 106.84215 * 180.02562 * 27 26 24 29 29 C 1.34520 * 106.83825 * 0.02562 * 28 27 26 30 30 O 1.34298 * 125.78847 * 299.69844 * 26 24 21 31 31 C 1.54849 * 103.44771 * 327.06341 * 16 14 9 32 32 H 0.97000 * 119.99619 * 0.02562 * 1 2 3 33 33 H 1.09006 * 110.62312 * 208.57433 * 12 10 9 34 34 H 1.09003 * 110.62866 * 85.55079 * 12 10 9 35 35 H 1.09007 * 110.62816 * 241.51298 * 13 12 10 36 36 H 1.09002 * 110.76735 * 118.55614 * 13 12 10 37 37 H 0.96991 * 119.99898 * 94.06470 * 18 16 14 38 38 H 1.09003 * 117.49573 * 359.97438 * 23 21 19 39 39 H 1.08998 * 117.50350 * 145.02607 * 23 21 19 40 40 H 1.08000 * 126.58110 * 0.03871 * 27 26 24 41 41 H 1.07995 * 126.58364 * 179.97438 * 28 27 26 42 42 H 1.07998 * 125.78695 * 180.02562 * 29 28 27 43 43 H 1.09003 * 110.62342 * 241.51305 * 31 16 14 44 44 H 1.08994 * 110.62872 * 118.49171 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1500 -2.6705 0.0066 11 1 -0.8013 -1.7966 0.0146 12 6 -0.2685 -3.6088 1.2453 13 6 1.0725 -4.3830 1.2401 14 6 1.8187 -3.8072 -0.0005 15 1 2.9012 -3.9343 0.0011 16 6 1.0615 -4.3865 -1.2334 17 1 1.6155 -4.1897 -2.1514 18 7 0.8285 -5.8233 -1.0675 19 6 1.7768 -6.7069 -1.4371 20 8 2.8232 -6.3124 -1.9065 21 6 1.5373 -8.1848 -1.2659 22 1 0.5084 -8.5141 -1.4108 23 6 2.3733 -8.9190 -0.2157 24 6 2.6519 -9.1366 -1.7049 25 1 3.5585 -8.6937 -2.1171 26 6 2.2431 -10.4577 -2.3038 27 6 2.5503 -10.8895 -3.5401 28 6 1.9681 -12.1699 -3.6833 29 6 1.3394 -12.4437 -2.5259 30 8 1.5151 -11.4058 -1.6917 31 6 -0.2795 -3.6122 -1.2288 32 1 -0.4849 0.8401 -0.0004 33 1 -1.1081 -4.2942 1.1289 34 1 -0.3716 -3.0255 2.1604 35 1 0.8980 -5.4525 1.1212 36 1 1.6359 -4.1863 2.1523 37 1 -0.0083 -6.1386 -0.6918 38 1 3.0969 -8.3331 0.3511 39 1 1.8944 -9.7316 0.3307 40 1 3.1306 -10.3599 -4.2812 41 1 2.0177 -12.8058 -4.5548 42 1 0.7915 -13.3474 -2.3033 43 1 -1.1179 -4.2972 -1.1031 44 1 -0.3907 -3.0315 -2.1445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096043534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:04 Heat of formation + Delta-G solvation = 38.938946 kcal Electronic energy + Delta-G solvation = -26218.592758 eV Core-core repulsion = 22525.247125 eV Total energy + Delta-G solvation = -3693.345633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49806 -41.55375 -40.14966 -37.48052 -35.44895 -34.19744 -33.89818 -31.01755 -30.85900 -30.39838 -29.28011 -26.39587 -25.17425 -24.11284 -22.78815 -22.59412 -21.75100 -21.12563 -20.84566 -20.12865 -18.96767 -18.68249 -17.95004 -17.07411 -16.82991 -16.71530 -16.43143 -16.08935 -15.76911 -15.44955 -15.22877 -14.25554 -14.05394 -13.97567 -13.73746 -13.67289 -13.47483 -13.39562 -13.21639 -12.89022 -12.86516 -12.78975 -12.60754 -12.37520 -12.02541 -11.99835 -11.89583 -11.59907 -11.54471 -11.18656 -11.05031 -10.84381 -10.79913 -10.78116 -9.98784 -9.27640 -8.86055 -7.79855 -5.19128 0.70681 1.45737 1.47694 1.50051 1.54214 1.70803 1.96998 2.22872 2.50431 2.85933 3.33283 3.43843 3.54989 3.63049 3.78775 3.93862 4.06862 4.11713 4.13976 4.17335 4.20462 4.38335 4.42483 4.47752 4.61412 4.67786 4.72611 4.81554 4.87083 4.92959 4.98153 5.04867 5.08115 5.08826 5.15286 5.21863 5.24574 5.33616 5.46715 5.55264 5.60748 5.75570 5.89488 6.21713 6.27714 6.63940 7.05400 7.31382 7.68970 8.55064 9.26825 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.032839 B = 0.002595 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.432409 B =10788.685399 C =11038.546640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.070 0.930 9 N -0.619 5.619 10 C 0.138 3.862 11 H 0.120 0.880 12 C -0.126 4.126 13 C -0.116 4.116 14 C 0.118 3.882 15 H 0.065 0.935 16 C 0.147 3.853 17 H 0.051 0.949 18 N -0.692 5.692 19 C 0.538 3.462 20 O -0.586 6.586 21 C -0.168 4.168 22 H 0.149 0.851 23 C -0.119 4.119 24 C -0.057 4.057 25 H 0.132 0.868 26 C 0.004 3.996 27 C -0.219 4.219 28 C -0.228 4.228 29 C -0.036 4.036 30 O -0.184 6.184 31 C -0.125 4.125 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.149 0.851 41 H 0.167 0.833 42 H 0.241 0.759 43 H 0.098 0.902 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -25.798 -1.941 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.355 4.355 8 H 0.088 0.912 9 N -0.341 5.341 10 C 0.032 3.968 11 H 0.138 0.862 12 C -0.165 4.165 13 C -0.155 4.155 14 C 0.010 3.990 15 H 0.084 0.916 16 C 0.040 3.960 17 H 0.069 0.931 18 N -0.343 5.343 19 C 0.326 3.674 20 O -0.466 6.466 21 C -0.189 4.189 22 H 0.166 0.834 23 C -0.156 4.156 24 C -0.076 4.076 25 H 0.150 0.850 26 C -0.046 4.046 27 C -0.238 4.238 28 C -0.247 4.247 29 C -0.103 4.103 30 O -0.080 6.080 31 C -0.165 4.165 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.253 0.747 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.167 0.833 41 H 0.185 0.815 42 H 0.257 0.743 43 H 0.116 0.884 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.796 -25.141 -1.979 25.283 hybrid contribution 0.475 1.272 -0.363 1.405 sum -1.321 -23.870 -2.342 24.021 Atomic orbital electron populations 1.69659 1.05847 1.25152 1.58663 1.25413 0.96575 1.00179 1.03436 0.85185 0.77197 0.79319 0.77818 1.21014 1.21588 1.20810 1.19262 0.90475 0.83638 1.42149 0.91187 1.46734 1.03074 0.99463 1.84786 1.23696 0.85899 0.95475 0.91739 0.86240 1.22955 0.97006 0.97991 0.98567 1.22812 0.96442 0.99432 0.96822 1.23320 0.95779 0.84794 0.95082 0.91650 1.22068 0.97213 0.79053 0.97686 0.93088 1.45884 1.19858 1.05230 1.63346 1.20053 0.83003 0.87858 0.76480 1.90697 1.28063 1.81149 1.46698 1.22323 0.99764 0.88654 1.08161 0.83358 1.23176 1.00765 1.01551 0.90156 1.20380 0.99407 0.88672 0.99101 0.85040 1.21312 0.99332 0.91075 0.92888 1.21850 1.06473 0.98081 0.97396 1.22159 1.03659 0.97776 1.01103 1.24823 1.03705 0.92569 0.89203 1.83963 1.57409 1.24648 1.42003 1.23119 0.95389 0.98210 0.99795 0.94104 0.89369 0.94689 0.89282 0.94037 0.74654 0.87398 0.85116 0.83345 0.81530 0.74276 0.88423 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 10.47 21.65 0.23 -54.76 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.23 -12.92 10.59 84.03 0.89 -12.03 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.62 -31.51 2.99 -615.26 -1.84 -33.35 16 10 C 0.14 6.16 4.72 46.24 0.22 6.37 16 11 H 0.12 6.27 5.52 -2.39 -0.01 6.26 16 12 C -0.13 -4.56 6.44 32.21 0.21 -4.35 16 13 C -0.12 -4.00 6.32 32.20 0.20 -3.80 16 14 C 0.12 4.97 5.35 46.22 0.25 5.21 16 15 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.15 5.37 3.07 46.61 0.14 5.52 16 17 H 0.05 2.20 7.71 -2.38 -0.02 2.18 16 18 N -0.69 -18.40 3.63 -434.89 -1.58 -19.98 16 19 C 0.54 15.17 7.61 87.65 0.67 15.83 16 20 O -0.59 -22.13 15.99 -3.04 -0.05 -22.18 16 21 C -0.17 -3.30 5.89 -11.54 -0.07 -3.37 16 22 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 23 C -0.12 -2.01 9.87 30.61 0.30 -1.71 16 24 C -0.06 -1.17 5.75 -11.52 -0.07 -1.24 16 25 H 0.13 3.11 7.67 -2.39 -0.02 3.09 16 26 C 0.00 0.07 6.80 24.83 0.17 0.24 16 27 C -0.22 -4.28 10.81 22.19 0.24 -4.04 16 28 C -0.23 -3.45 10.91 22.19 0.24 -3.20 16 29 C -0.04 -0.47 12.09 66.97 0.81 0.34 16 30 O -0.18 -3.26 10.36 -2.52 -0.03 -3.29 16 31 C -0.13 -4.58 6.20 32.22 0.20 -4.38 16 32 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.09 2.44 7.82 -2.38 -0.02 2.42 16 34 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 2.40 6.48 -2.38 -0.02 2.39 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.42 8.01 8.02 -92.72 -0.74 7.26 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.13 1.70 7.96 -2.39 -0.02 1.68 16 40 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.24 0.90 8.06 -2.91 -0.02 0.87 16 43 H 0.10 2.69 7.34 -2.39 -0.02 2.68 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -72.32 359.91 3.91 -68.41 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.28 Total: 24.40 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.87 Total: -7.72 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -3.19 Total: -108.09 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -72.32 3.91 -68.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096043534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.346 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds