Wall clock time and date at job start Tue Mar 31 2020 11:48:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46497 * 110.91645 * 2 1
4 4 C 1.34782 * 120.00286 * 56.02623 * 3 2 1
5 5 O 1.21589 * 119.99806 * 0.02562 * 4 3 2
6 6 N 1.34779 * 120.00112 * 180.02562 * 4 3 2
7 7 C 1.46494 * 119.99708 * 180.02562 * 6 4 3
8 8 C 1.50703 * 109.46905 * 180.02562 * 7 6 4
9 9 C 1.38326 * 119.96036 * 269.71965 * 8 7 6
10 10 C 1.38280 * 120.13593 * 180.27023 * 9 8 7
11 11 C 1.38125 * 120.06813 * 0.02562 * 10 9 8
12 12 C 1.38857 * 119.92941 * 359.97438 * 11 10 9
13 13 O 1.35759 * 120.06714 * 179.97438 * 12 11 10
14 14 C 1.34831 * 116.99718 * 354.48542 * 13 12 11
15 15 H 1.07998 * 120.00057 * 5.06548 * 14 13 12
16 16 C 1.38654 * 119.99581 * 185.05723 * 14 13 12
17 17 N 1.31558 * 119.99951 * 180.02562 * 16 14 13
18 18 Si 1.86801 * 120.00181 * 0.02562 * 16 14 13
19 19 H 1.48493 * 109.47207 * 89.99972 * 18 16 14
20 20 H 1.48498 * 109.46980 * 209.99927 * 18 16 14
21 21 H 1.48496 * 109.46974 * 329.99687 * 18 16 14
22 22 C 1.38074 * 119.96544 * 89.99914 * 8 7 6
23 23 C 1.54640 * 111.06916 * 123.98552 * 2 1 3
24 24 C 1.51099 * 104.72320 * 93.41262 * 23 2 1
25 25 C 1.30529 * 111.10629 * 16.44147 * 24 23 2
26 26 C 1.51097 * 111.10271 * 359.97438 * 25 24 23
27 27 H 1.08998 * 109.47266 * 60.70399 * 1 2 3
28 28 H 1.08996 * 109.47552 * 180.70496 * 1 2 3
29 29 H 1.09001 * 109.47211 * 300.70595 * 1 2 3
30 30 H 0.97005 * 120.00206 * 236.03657 * 3 2 1
31 31 H 0.96996 * 119.99770 * 0.02562 * 6 4 3
32 32 H 1.08996 * 109.47638 * 60.00041 * 7 6 4
33 33 H 1.08994 * 109.47133 * 299.99741 * 7 6 4
34 34 H 1.07995 * 119.93590 * 0.26096 * 9 8 7
35 35 H 1.07998 * 119.96668 * 180.02562 * 10 9 8
36 36 H 1.08000 * 120.03457 * 179.97438 * 11 10 9
37 37 H 0.96999 * 120.00512 * 179.97438 * 17 16 14
38 38 H 1.08000 * 120.03806 * 359.69747 * 22 8 7
39 39 H 1.09001 * 110.38920 * 212.22788 * 23 2 1
40 40 H 1.08998 * 110.38631 * 334.60614 * 23 2 1
41 41 H 1.08004 * 124.45087 * 196.45372 * 24 23 2
42 42 H 1.08001 * 124.44993 * 180.02562 * 25 24 23
43 43 H 1.09006 * 110.39042 * 224.75980 * 26 25 24
44 44 H 1.08998 * 110.48545 * 102.42584 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0530 1.3684 0.0000
4 6 1.6843 2.2308 0.9680
5 8 0.9180 1.8729 1.8415
6 7 2.1651 3.4900 0.9676
7 6 1.7648 4.4271 2.0201
8 6 2.4364 5.7566 1.7909
9 6 3.6709 6.0140 2.3594
10 6 4.2879 7.2347 2.1561
11 6 3.6725 8.2012 1.3847
12 6 2.4333 7.9457 0.8127
13 8 1.8258 8.8938 0.0544
14 6 2.4231 10.1009 -0.0108
15 1 3.3837 10.2540 0.4583
16 6 1.8040 11.1454 -0.6803
17 7 2.3870 12.3230 -0.7444
18 14 0.1422 10.8805 -1.4914
19 1 -0.9376 11.1914 -0.5206
20 1 0.0193 11.7738 -2.6713
21 1 0.0240 9.4658 -1.9271
22 6 1.8163 6.7184 1.0185
23 6 2.0859 -0.8066 1.1965
24 6 2.3051 -2.1990 0.6523
25 6 2.3048 -2.1990 -0.6530
26 6 2.0846 -0.8066 -1.1969
27 1 -0.3634 0.5028 -0.8962
28 1 -0.3634 -1.0275 0.0126
29 1 -0.3634 0.5248 0.8836
30 1 2.6645 1.6540 -0.6967
31 1 2.7761 3.7756 0.2706
32 1 2.0626 4.0318 2.9912
33 1 0.6830 4.5583 1.9975
34 1 4.1538 5.2601 2.9634
35 1 5.2519 7.4326 2.6010
36 1 4.1547 9.1545 1.2266
37 1 1.9542 13.0536 -1.2131
38 1 0.8526 6.5167 0.5745
39 1 3.0289 -0.3792 1.5373
40 1 1.3611 -0.8269 2.0104
41 1 2.4437 -3.0790 1.2631
42 1 2.4428 -3.0788 -1.2640
43 1 1.3592 -0.8269 -2.0103
44 1 3.0263 -0.3776 -1.5394
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118374069.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:31
Heat of formation + Delta-G solvation = -10.570083 kcal
Electronic energy + Delta-G solvation = -25258.089667 eV
Core-core repulsion = 21562.597161 eV
Total energy + Delta-G solvation = -3695.492506 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.63948 -39.38721 -38.62104 -36.97071 -34.52445 -34.02020 -32.45406 -31.11923
-29.85586 -29.27154 -28.58628 -26.23481 -25.63935 -24.99311 -21.89881 -21.44229
-20.71495 -19.89285 -19.37883 -18.17784 -17.75063 -17.24997 -16.69354 -15.67672
-15.55302 -15.24575 -15.06346 -14.82122 -14.31499 -14.07656 -13.86780 -13.81884
-13.44737 -13.27148 -12.81184 -12.59331 -12.51726 -12.44971 -12.19966 -12.17277
-12.01124 -11.80516 -11.49642 -11.46426 -11.13760 -10.94485 -10.88586 -10.77321
-10.22233 -9.98947 -9.47715 -9.35530 -9.20554 -8.94279 -8.83754 -8.35256
-7.49569 -6.47585 -4.15011 1.76676 1.92215 2.13618 2.76625 3.18167
3.20836 3.22437 3.36067 4.08345 4.18524 4.22281 4.38758 4.48745
4.65947 4.70182 4.92134 5.02317 5.08028 5.11678 5.30659 5.39222
5.42360 5.47484 5.58097 5.65653 5.66556 5.74507 5.74582 5.84148
5.86213 5.99834 6.13448 6.18219 6.19809 6.41027 6.48774 6.53381
6.54015 6.66577 6.88916 6.99623 7.10870 7.19254 7.48473 7.71758
7.96143 8.00998 8.61139 8.87292 9.48298 10.59806
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.020914 B = 0.002420 C = 0.002277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1338.493826 B =11568.152965 C =12294.153070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.191 3.809
3 N -0.740 5.740
4 C 0.705 3.295
5 O -0.589 6.589
6 N -0.738 5.738
7 C 0.187 3.813
8 C -0.075 4.075
9 C -0.185 4.185
10 C -0.078 4.078
11 C -0.212 4.212
12 C 0.156 3.844
13 O -0.216 6.216
14 C -0.391 4.391
15 H 0.107 0.893
16 C 0.064 3.936
17 N -0.878 5.878
18 Si 0.906 3.094
19 H -0.273 1.273
20 H -0.282 1.282
21 H -0.260 1.260
22 C -0.170 4.170
23 C -0.104 4.104
24 C -0.157 4.157
25 C -0.170 4.170
26 C -0.101 4.101
27 H 0.054 0.946
28 H 0.062 0.938
29 H 0.087 0.913
30 H 0.396 0.604
31 H 0.398 0.602
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.109 0.891
35 H 0.112 0.888
36 H 0.134 0.866
37 H 0.280 0.720
38 H 0.118 0.882
39 H 0.078 0.922
40 H 0.081 0.919
41 H 0.125 0.875
42 H 0.126 0.874
43 H 0.079 0.921
44 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.238 -24.812 0.219 24.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.104 3.896
3 N -0.395 5.395
4 C 0.405 3.595
5 O -0.467 6.467
6 N -0.393 5.393
7 C 0.064 3.936
8 C -0.075 4.075
9 C -0.205 4.205
10 C -0.096 4.096
11 C -0.232 4.232
12 C 0.104 3.896
13 O -0.121 6.121
14 C -0.467 4.467
15 H 0.124 0.876
16 C -0.140 4.140
17 N -0.515 5.515
18 Si 0.731 3.269
19 H -0.198 1.198
20 H -0.207 1.207
21 H -0.184 1.184
22 C -0.190 4.190
23 C -0.143 4.143
24 C -0.175 4.175
25 C -0.189 4.189
26 C -0.139 4.139
27 H 0.073 0.927
28 H 0.081 0.919
29 H 0.105 0.895
30 H 0.230 0.770
31 H 0.232 0.768
32 H 0.089 0.911
33 H 0.089 0.911
34 H 0.127 0.873
35 H 0.130 0.870
36 H 0.152 0.848
37 H 0.090 0.910
38 H 0.136 0.864
39 H 0.096 0.904
40 H 0.100 0.900
41 H 0.143 0.857
42 H 0.144 0.856
43 H 0.097 0.903
44 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 0.282 -24.870 0.821 24.885
hybrid contribution 0.185 0.482 -1.024 1.147
sum 0.467 -24.388 -0.203 24.393
Atomic orbital electron populations
1.22139 0.93132 1.02289 1.03870 1.20847 0.94194 0.79800 0.94787
1.45197 1.52209 1.11837 1.30299 1.15936 0.80825 0.80554 0.82143
1.90867 1.39401 1.77490 1.38951 1.45287 1.51735 1.10491 1.31782
1.19980 0.98802 0.84857 0.89946 1.19286 0.95240 0.94140 0.98874
1.20558 0.96344 0.97936 1.05641 1.20808 0.98704 0.93082 0.97034
1.21366 0.96920 1.01489 1.03396 1.19066 0.91309 0.89288 0.89982
1.83579 1.48683 1.20851 1.58971 1.20759 1.05429 0.83648 1.36819
0.87595 1.24473 0.99329 0.93630 0.96531 1.69641 1.39179 1.01290
1.41404 0.86178 0.82507 0.79214 0.78992 1.19821 1.20749 1.18375
1.20089 1.01402 0.92682 1.04833 1.21760 1.01675 0.92277 0.98545
1.23324 1.00021 0.97926 0.96275 1.23110 1.02266 0.97275 0.96207
1.21612 1.01399 0.93373 0.97504 0.92667 0.91912 0.89460 0.77023
0.76812 0.91057 0.91060 0.87293 0.86996 0.84849 0.90972 0.86392
0.90410 0.90045 0.85748 0.85603 0.90265 0.90124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.59 8.36 37.16 0.31 -1.28 16
2 C 0.19 1.77 0.93 -130.11 -0.12 1.65 16
3 N -0.74 -7.19 5.15 -50.82 -0.26 -7.46 16
4 C 0.71 9.09 8.10 -86.91 -0.70 8.38 16
5 O -0.59 -9.48 13.82 5.29 0.07 -9.40 16
6 N -0.74 -8.99 5.55 -66.42 -0.37 -9.36 16
7 C 0.19 2.58 5.80 -5.20 -0.03 2.55 16
8 C -0.07 -1.17 5.25 -104.65 -0.55 -1.72 16
9 C -0.19 -2.85 9.70 -39.53 -0.38 -3.24 16
10 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16
11 C -0.21 -4.33 9.17 -39.39 -0.36 -4.69 16
12 C 0.16 3.42 6.65 -39.11 -0.26 3.16 16
13 O -0.22 -5.51 8.59 0.02 0.00 -5.51 16
14 C -0.39 -10.72 9.95 30.89 0.31 -10.42 16
15 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16
16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16
17 N -0.88 -24.88 13.96 55.48 0.77 -24.10 16
18 Si 0.91 21.29 28.62 -169.99 -4.86 16.43 16
19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
21 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16
22 C -0.17 -3.17 9.64 -39.40 -0.38 -3.55 16
23 C -0.10 -1.01 5.37 -26.83 -0.14 -1.15 16
24 C -0.16 -1.21 10.77 -35.70 -0.38 -1.59 16
25 C -0.17 -1.18 10.78 -35.70 -0.38 -1.56 16
26 C -0.10 -0.72 6.04 -26.84 -0.16 -0.88 16
27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.09 1.13 6.00 -51.93 -0.31 0.82 16
30 H 0.40 2.89 8.35 -40.82 -0.34 2.55 16
31 H 0.40 4.24 8.48 -40.82 -0.35 3.89 16
32 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16
33 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16
34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16
35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16
36 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16
37 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16
38 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16
39 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16
40 H 0.08 0.90 7.91 -51.93 -0.41 0.48 16
41 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16
42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16
43 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16
44 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16
LS Contribution 365.70 15.07 5.51 5.51
Total: -1.00 -30.41 365.70 -9.04 -39.45
By element:
Atomic # 1 Polarization: 14.98 SS G_CDS: -6.16 Total: 8.82 kcal
Atomic # 6 Polarization: -10.64 SS G_CDS: -3.74 Total: -14.38 kcal
Atomic # 7 Polarization: -41.06 SS G_CDS: 0.14 Total: -40.91 kcal
Atomic # 8 Polarization: -14.98 SS G_CDS: 0.07 Total: -14.91 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -4.86 Total: 16.43 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -30.41 -9.04 -39.45 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118374069.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal
(2) G-P(sol) polarization free energy of solvation -30.414 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds