Wall clock time and date at job start Tue Mar 31 2020 11:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.91645 * 2 1 4 4 C 1.34782 * 120.00286 * 56.02623 * 3 2 1 5 5 O 1.21589 * 119.99806 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00112 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99708 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46905 * 180.02562 * 7 6 4 9 9 C 1.38326 * 119.96036 * 269.71965 * 8 7 6 10 10 C 1.38280 * 120.13593 * 180.27023 * 9 8 7 11 11 C 1.38125 * 120.06813 * 0.02562 * 10 9 8 12 12 C 1.38857 * 119.92941 * 359.97438 * 11 10 9 13 13 O 1.35759 * 120.06714 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99718 * 354.48542 * 13 12 11 15 15 H 1.07998 * 120.00057 * 5.06548 * 14 13 12 16 16 C 1.38654 * 119.99581 * 185.05723 * 14 13 12 17 17 N 1.31558 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00181 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47207 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.46980 * 209.99927 * 18 16 14 21 21 H 1.48496 * 109.46974 * 329.99687 * 18 16 14 22 22 C 1.38074 * 119.96544 * 89.99914 * 8 7 6 23 23 C 1.54640 * 111.06916 * 123.98552 * 2 1 3 24 24 C 1.51099 * 104.72320 * 93.41262 * 23 2 1 25 25 C 1.30529 * 111.10629 * 16.44147 * 24 23 2 26 26 C 1.51097 * 111.10271 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47266 * 60.70399 * 1 2 3 28 28 H 1.08996 * 109.47552 * 180.70496 * 1 2 3 29 29 H 1.09001 * 109.47211 * 300.70595 * 1 2 3 30 30 H 0.97005 * 120.00206 * 236.03657 * 3 2 1 31 31 H 0.96996 * 119.99770 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47638 * 60.00041 * 7 6 4 33 33 H 1.08994 * 109.47133 * 299.99741 * 7 6 4 34 34 H 1.07995 * 119.93590 * 0.26096 * 9 8 7 35 35 H 1.07998 * 119.96668 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.03457 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00512 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.03806 * 359.69747 * 22 8 7 39 39 H 1.09001 * 110.38920 * 212.22788 * 23 2 1 40 40 H 1.08998 * 110.38631 * 334.60614 * 23 2 1 41 41 H 1.08004 * 124.45087 * 196.45372 * 24 23 2 42 42 H 1.08001 * 124.44993 * 180.02562 * 25 24 23 43 43 H 1.09006 * 110.39042 * 224.75980 * 26 25 24 44 44 H 1.08998 * 110.48545 * 102.42584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6843 2.2308 0.9680 5 8 0.9180 1.8729 1.8415 6 7 2.1651 3.4900 0.9676 7 6 1.7648 4.4271 2.0201 8 6 2.4364 5.7566 1.7909 9 6 3.6709 6.0140 2.3594 10 6 4.2879 7.2347 2.1561 11 6 3.6725 8.2012 1.3847 12 6 2.4333 7.9457 0.8127 13 8 1.8258 8.8938 0.0544 14 6 2.4231 10.1009 -0.0108 15 1 3.3837 10.2540 0.4583 16 6 1.8040 11.1454 -0.6803 17 7 2.3870 12.3230 -0.7444 18 14 0.1422 10.8805 -1.4914 19 1 -0.9376 11.1914 -0.5206 20 1 0.0193 11.7738 -2.6713 21 1 0.0240 9.4658 -1.9271 22 6 1.8163 6.7184 1.0185 23 6 2.0859 -0.8066 1.1965 24 6 2.3051 -2.1990 0.6523 25 6 2.3048 -2.1990 -0.6530 26 6 2.0846 -0.8066 -1.1969 27 1 -0.3634 0.5028 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3634 0.5248 0.8836 30 1 2.6645 1.6540 -0.6967 31 1 2.7761 3.7756 0.2706 32 1 2.0626 4.0318 2.9912 33 1 0.6830 4.5583 1.9975 34 1 4.1538 5.2601 2.9634 35 1 5.2519 7.4326 2.6010 36 1 4.1547 9.1545 1.2266 37 1 1.9542 13.0536 -1.2131 38 1 0.8526 6.5167 0.5745 39 1 3.0289 -0.3792 1.5373 40 1 1.3611 -0.8269 2.0104 41 1 2.4437 -3.0790 1.2631 42 1 2.4428 -3.0788 -1.2640 43 1 1.3592 -0.8269 -2.0103 44 1 3.0263 -0.3776 -1.5394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118374069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:31 Heat of formation + Delta-G solvation = -10.570083 kcal Electronic energy + Delta-G solvation = -25258.089667 eV Core-core repulsion = 21562.597161 eV Total energy + Delta-G solvation = -3695.492506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63948 -39.38721 -38.62104 -36.97071 -34.52445 -34.02020 -32.45406 -31.11923 -29.85586 -29.27154 -28.58628 -26.23481 -25.63935 -24.99311 -21.89881 -21.44229 -20.71495 -19.89285 -19.37883 -18.17784 -17.75063 -17.24997 -16.69354 -15.67672 -15.55302 -15.24575 -15.06346 -14.82122 -14.31499 -14.07656 -13.86780 -13.81884 -13.44737 -13.27148 -12.81184 -12.59331 -12.51726 -12.44971 -12.19966 -12.17277 -12.01124 -11.80516 -11.49642 -11.46426 -11.13760 -10.94485 -10.88586 -10.77321 -10.22233 -9.98947 -9.47715 -9.35530 -9.20554 -8.94279 -8.83754 -8.35256 -7.49569 -6.47585 -4.15011 1.76676 1.92215 2.13618 2.76625 3.18167 3.20836 3.22437 3.36067 4.08345 4.18524 4.22281 4.38758 4.48745 4.65947 4.70182 4.92134 5.02317 5.08028 5.11678 5.30659 5.39222 5.42360 5.47484 5.58097 5.65653 5.66556 5.74507 5.74582 5.84148 5.86213 5.99834 6.13448 6.18219 6.19809 6.41027 6.48774 6.53381 6.54015 6.66577 6.88916 6.99623 7.10870 7.19254 7.48473 7.71758 7.96143 8.00998 8.61139 8.87292 9.48298 10.59806 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.002420 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.493826 B =11568.152965 C =12294.153070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.191 3.809 3 N -0.740 5.740 4 C 0.705 3.295 5 O -0.589 6.589 6 N -0.738 5.738 7 C 0.187 3.813 8 C -0.075 4.075 9 C -0.185 4.185 10 C -0.078 4.078 11 C -0.212 4.212 12 C 0.156 3.844 13 O -0.216 6.216 14 C -0.391 4.391 15 H 0.107 0.893 16 C 0.064 3.936 17 N -0.878 5.878 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.170 4.170 23 C -0.104 4.104 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.101 4.101 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.396 0.604 31 H 0.398 0.602 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.280 0.720 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -24.812 0.219 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.104 3.896 3 N -0.395 5.395 4 C 0.405 3.595 5 O -0.467 6.467 6 N -0.393 5.393 7 C 0.064 3.936 8 C -0.075 4.075 9 C -0.205 4.205 10 C -0.096 4.096 11 C -0.232 4.232 12 C 0.104 3.896 13 O -0.121 6.121 14 C -0.467 4.467 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.515 5.515 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.190 4.190 23 C -0.143 4.143 24 C -0.175 4.175 25 C -0.189 4.189 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.230 0.770 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.282 -24.870 0.821 24.885 hybrid contribution 0.185 0.482 -1.024 1.147 sum 0.467 -24.388 -0.203 24.393 Atomic orbital electron populations 1.22139 0.93132 1.02289 1.03870 1.20847 0.94194 0.79800 0.94787 1.45197 1.52209 1.11837 1.30299 1.15936 0.80825 0.80554 0.82143 1.90867 1.39401 1.77490 1.38951 1.45287 1.51735 1.10491 1.31782 1.19980 0.98802 0.84857 0.89946 1.19286 0.95240 0.94140 0.98874 1.20558 0.96344 0.97936 1.05641 1.20808 0.98704 0.93082 0.97034 1.21366 0.96920 1.01489 1.03396 1.19066 0.91309 0.89288 0.89982 1.83579 1.48683 1.20851 1.58971 1.20759 1.05429 0.83648 1.36819 0.87595 1.24473 0.99329 0.93630 0.96531 1.69641 1.39179 1.01290 1.41404 0.86178 0.82507 0.79214 0.78992 1.19821 1.20749 1.18375 1.20089 1.01402 0.92682 1.04833 1.21760 1.01675 0.92277 0.98545 1.23324 1.00021 0.97926 0.96275 1.23110 1.02266 0.97275 0.96207 1.21612 1.01399 0.93373 0.97504 0.92667 0.91912 0.89460 0.77023 0.76812 0.91057 0.91060 0.87293 0.86996 0.84849 0.90972 0.86392 0.90410 0.90045 0.85748 0.85603 0.90265 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.36 37.16 0.31 -1.28 16 2 C 0.19 1.77 0.93 -130.11 -0.12 1.65 16 3 N -0.74 -7.19 5.15 -50.82 -0.26 -7.46 16 4 C 0.71 9.09 8.10 -86.91 -0.70 8.38 16 5 O -0.59 -9.48 13.82 5.29 0.07 -9.40 16 6 N -0.74 -8.99 5.55 -66.42 -0.37 -9.36 16 7 C 0.19 2.58 5.80 -5.20 -0.03 2.55 16 8 C -0.07 -1.17 5.25 -104.65 -0.55 -1.72 16 9 C -0.19 -2.85 9.70 -39.53 -0.38 -3.24 16 10 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 11 C -0.21 -4.33 9.17 -39.39 -0.36 -4.69 16 12 C 0.16 3.42 6.65 -39.11 -0.26 3.16 16 13 O -0.22 -5.51 8.59 0.02 0.00 -5.51 16 14 C -0.39 -10.72 9.95 30.89 0.31 -10.42 16 15 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -24.88 13.96 55.48 0.77 -24.10 16 18 Si 0.91 21.29 28.62 -169.99 -4.86 16.43 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.17 -3.17 9.64 -39.40 -0.38 -3.55 16 23 C -0.10 -1.01 5.37 -26.83 -0.14 -1.15 16 24 C -0.16 -1.21 10.77 -35.70 -0.38 -1.59 16 25 C -0.17 -1.18 10.78 -35.70 -0.38 -1.56 16 26 C -0.10 -0.72 6.04 -26.84 -0.16 -0.88 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.13 6.00 -51.93 -0.31 0.82 16 30 H 0.40 2.89 8.35 -40.82 -0.34 2.55 16 31 H 0.40 4.24 8.48 -40.82 -0.35 3.89 16 32 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 37 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.08 0.90 7.91 -51.93 -0.41 0.48 16 41 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 44 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -30.41 365.70 -9.04 -39.45 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.16 Total: 8.82 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -3.74 Total: -14.38 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.14 Total: -40.91 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.07 Total: -14.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.86 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.41 -9.04 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118374069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds