Wall clock time and date at job start Tue Mar 31 2020 11:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.91645 * 2 1 4 4 C 1.34782 * 120.00286 * 56.02623 * 3 2 1 5 5 O 1.21589 * 119.99806 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00112 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99708 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46905 * 180.02562 * 7 6 4 9 9 C 1.38326 * 119.96036 * 269.71965 * 8 7 6 10 10 C 1.38280 * 120.13593 * 180.27023 * 9 8 7 11 11 C 1.38125 * 120.06813 * 0.02562 * 10 9 8 12 12 C 1.38857 * 119.92941 * 359.97438 * 11 10 9 13 13 O 1.35759 * 120.06714 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99718 * 354.48542 * 13 12 11 15 15 H 1.07998 * 120.00057 * 5.06548 * 14 13 12 16 16 C 1.38654 * 119.99581 * 185.05723 * 14 13 12 17 17 N 1.31558 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00181 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47207 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.46980 * 209.99927 * 18 16 14 21 21 H 1.48496 * 109.46974 * 329.99687 * 18 16 14 22 22 C 1.38074 * 119.96544 * 89.99914 * 8 7 6 23 23 C 1.54640 * 111.06916 * 123.98552 * 2 1 3 24 24 C 1.51099 * 104.72320 * 93.41262 * 23 2 1 25 25 C 1.30529 * 111.10629 * 16.44147 * 24 23 2 26 26 C 1.51097 * 111.10271 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47266 * 60.70399 * 1 2 3 28 28 H 1.08996 * 109.47552 * 180.70496 * 1 2 3 29 29 H 1.09001 * 109.47211 * 300.70595 * 1 2 3 30 30 H 0.97005 * 120.00206 * 236.03657 * 3 2 1 31 31 H 0.96996 * 119.99770 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47638 * 60.00041 * 7 6 4 33 33 H 1.08994 * 109.47133 * 299.99741 * 7 6 4 34 34 H 1.07995 * 119.93590 * 0.26096 * 9 8 7 35 35 H 1.07998 * 119.96668 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.03457 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00512 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.03806 * 359.69747 * 22 8 7 39 39 H 1.09001 * 110.38920 * 212.22788 * 23 2 1 40 40 H 1.08998 * 110.38631 * 334.60614 * 23 2 1 41 41 H 1.08004 * 124.45087 * 196.45372 * 24 23 2 42 42 H 1.08001 * 124.44993 * 180.02562 * 25 24 23 43 43 H 1.09006 * 110.39042 * 224.75980 * 26 25 24 44 44 H 1.08998 * 110.48545 * 102.42584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6843 2.2308 0.9680 5 8 0.9180 1.8729 1.8415 6 7 2.1651 3.4900 0.9676 7 6 1.7648 4.4271 2.0201 8 6 2.4364 5.7566 1.7909 9 6 3.6709 6.0140 2.3594 10 6 4.2879 7.2347 2.1561 11 6 3.6725 8.2012 1.3847 12 6 2.4333 7.9457 0.8127 13 8 1.8258 8.8938 0.0544 14 6 2.4231 10.1009 -0.0108 15 1 3.3837 10.2540 0.4583 16 6 1.8040 11.1454 -0.6803 17 7 2.3870 12.3230 -0.7444 18 14 0.1422 10.8805 -1.4914 19 1 -0.9376 11.1914 -0.5206 20 1 0.0193 11.7738 -2.6713 21 1 0.0240 9.4658 -1.9271 22 6 1.8163 6.7184 1.0185 23 6 2.0859 -0.8066 1.1965 24 6 2.3051 -2.1990 0.6523 25 6 2.3048 -2.1990 -0.6530 26 6 2.0846 -0.8066 -1.1969 27 1 -0.3634 0.5028 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3634 0.5248 0.8836 30 1 2.6645 1.6540 -0.6967 31 1 2.7761 3.7756 0.2706 32 1 2.0626 4.0318 2.9912 33 1 0.6830 4.5583 1.9975 34 1 4.1538 5.2601 2.9634 35 1 5.2519 7.4326 2.6010 36 1 4.1547 9.1545 1.2266 37 1 1.9542 13.0536 -1.2131 38 1 0.8526 6.5167 0.5745 39 1 3.0289 -0.3792 1.5373 40 1 1.3611 -0.8269 2.0104 41 1 2.4437 -3.0790 1.2631 42 1 2.4428 -3.0788 -1.2640 43 1 1.3592 -0.8269 -2.0103 44 1 3.0263 -0.3776 -1.5394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118374069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:30 Heat of formation + Delta-G solvation = -29.698076 kcal Electronic energy + Delta-G solvation = -25258.919119 eV Core-core repulsion = 21562.597161 eV Total energy + Delta-G solvation = -3696.321958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54344 -40.92368 -39.55686 -38.50690 -35.70393 -34.88594 -34.45174 -32.33847 -31.11045 -30.50318 -29.21305 -27.48680 -26.96795 -26.31490 -23.35129 -22.56762 -22.10701 -20.68064 -20.20911 -19.66281 -19.11807 -18.60587 -17.59280 -16.88979 -16.80161 -16.45741 -16.25421 -15.90668 -15.76128 -15.61103 -15.40909 -14.83017 -14.58824 -14.47291 -14.22275 -14.02443 -13.80715 -13.51499 -13.19387 -13.10120 -13.02006 -12.90675 -12.58036 -12.57061 -12.46966 -12.36857 -12.08477 -11.94476 -11.91563 -11.32395 -11.04519 -10.91483 -10.31553 -9.85842 -9.80027 -9.72942 -9.12698 -8.50462 -6.23192 0.33619 0.64529 1.31398 1.34812 1.37708 1.51094 1.79866 2.20063 2.27088 2.75016 2.98088 3.10571 3.37627 3.54400 3.76192 3.78323 3.99311 4.06564 4.28345 4.35482 4.41256 4.43150 4.49991 4.64169 4.69263 4.70501 4.78690 4.83512 4.84814 4.93647 4.96106 5.07532 5.11797 5.19031 5.32131 5.37229 5.51805 5.62515 5.63364 5.68360 5.69169 5.74641 5.88925 5.97811 6.05089 6.19352 6.84031 7.12417 7.57986 7.63776 8.60894 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.002420 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.493826 B =11568.152965 C =12294.153070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.183 3.817 3 N -0.727 5.727 4 C 0.703 3.297 5 O -0.622 6.622 6 N -0.732 5.732 7 C 0.195 3.805 8 C -0.059 4.059 9 C -0.158 4.158 10 C -0.074 4.074 11 C -0.228 4.228 12 C 0.119 3.881 13 O -0.245 6.245 14 C -0.398 4.398 15 H 0.084 0.916 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.263 1.263 22 C -0.168 4.168 23 C -0.103 4.103 24 C -0.172 4.172 25 C -0.159 4.159 26 C -0.098 4.098 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.410 0.590 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.284 0.716 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.091 0.909 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -28.156 -0.044 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.096 3.904 3 N -0.383 5.383 4 C 0.403 3.597 5 O -0.503 6.503 6 N -0.388 5.388 7 C 0.071 3.929 8 C -0.060 4.060 9 C -0.177 4.177 10 C -0.092 4.092 11 C -0.247 4.247 12 C 0.070 3.930 13 O -0.153 6.153 14 C -0.474 4.474 15 H 0.101 0.899 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.188 4.188 23 C -0.142 4.142 24 C -0.190 4.190 25 C -0.177 4.177 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.154 0.846 42 H 0.166 0.834 43 H 0.109 0.891 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.733 -28.258 0.546 28.273 hybrid contribution 0.187 1.220 -0.752 1.445 sum 0.920 -27.038 -0.205 27.055 Atomic orbital electron populations 1.22068 0.93944 1.02558 1.02449 1.20987 0.93697 0.79630 0.96048 1.45099 1.51833 1.11625 1.29704 1.16066 0.80520 0.80815 0.82317 1.90861 1.40895 1.78109 1.40463 1.45095 1.51852 1.10120 1.31715 1.19837 0.98252 0.83911 0.90872 1.19467 0.95126 0.94245 0.97155 1.21029 0.95396 0.97696 1.03541 1.21140 0.99770 0.92546 0.95734 1.21400 0.96902 1.01757 1.04671 1.19575 0.92403 0.89844 0.91175 1.83524 1.49512 1.20651 1.61592 1.20702 1.04926 0.85004 1.36766 0.89881 1.25252 1.02818 0.93371 0.97372 1.69723 1.40969 1.02179 1.43396 0.85246 0.78290 0.78919 0.78449 1.19311 1.19264 1.18697 1.20270 1.01647 0.91915 1.04976 1.21689 1.00474 0.93866 0.98136 1.23342 1.01592 0.97211 0.96891 1.23346 1.00553 0.97810 0.95995 1.21625 1.02246 0.93041 0.96589 0.92344 0.90819 0.92507 0.75382 0.75706 0.90010 0.91747 0.83415 0.83847 0.87200 0.90594 0.85998 0.91450 0.92284 0.84566 0.83403 0.89095 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.36 71.98 0.60 -2.33 16 2 C 0.18 3.07 0.93 4.71 0.00 3.08 16 3 N -0.73 -12.60 5.15 -432.95 -2.23 -14.83 16 4 C 0.70 16.88 8.10 179.05 1.45 18.33 16 5 O -0.62 -19.55 13.82 -3.99 -0.06 -19.61 16 6 N -0.73 -15.94 5.55 -482.31 -2.68 -18.61 16 7 C 0.20 4.83 5.80 85.64 0.50 5.32 16 8 C -0.06 -1.69 5.25 -19.88 -0.10 -1.80 16 9 C -0.16 -4.22 9.70 22.30 0.22 -4.00 16 10 C -0.07 -2.30 10.04 22.25 0.22 -2.08 16 11 C -0.23 -9.40 9.17 22.39 0.21 -9.19 16 12 C 0.12 5.30 6.65 22.58 0.15 5.45 16 13 O -0.25 -12.96 8.59 -22.85 -0.20 -13.16 16 14 C -0.40 -22.93 9.95 67.92 0.68 -22.25 16 15 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 16 C 0.01 0.59 5.49 84.83 0.47 1.06 16 17 N -0.92 -54.39 13.96 21.61 0.30 -54.09 16 18 Si 0.97 44.99 28.62 68.60 1.96 46.95 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 22 C -0.17 -6.10 9.64 22.39 0.22 -5.88 16 23 C -0.10 -1.88 5.37 30.53 0.16 -1.72 16 24 C -0.17 -2.29 10.77 26.26 0.28 -2.01 16 25 C -0.16 -1.69 10.78 26.26 0.28 -1.40 16 26 C -0.10 -1.07 6.04 30.53 0.18 -0.88 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.47 6.00 -2.39 -0.01 1.46 16 30 H 0.41 4.80 8.35 -92.70 -0.77 4.03 16 31 H 0.41 7.42 8.48 -92.71 -0.79 6.64 16 32 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 33 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 37 H 0.28 15.42 8.31 -92.71 -0.77 14.64 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 40 H 0.06 1.31 7.91 -2.39 -0.02 1.29 16 41 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 43 H 0.09 0.83 7.91 -2.38 -0.02 0.81 16 44 H 0.09 0.81 7.82 -2.39 -0.02 0.79 16 Total: -1.00 -69.57 365.70 2.09 -67.47 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.53 Total: 26.19 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 5.52 Total: -20.31 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -4.60 Total: -87.53 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.25 Total: -32.77 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.96 Total: 46.95 kcal Total: -69.57 2.09 -67.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118374069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.774 kcal (2) G-P(sol) polarization free energy of solvation -69.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds