Wall clock time and date at job start Tue Mar 31 2020 11:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48498 * 109.46965 * 239.99397 * 3 2 1 5 5 H 1.48500 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47069 * 119.99756 * 3 2 1 7 7 C 1.38796 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47016 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 N 1.46896 * 109.47114 * 180.02562 * 16 15 14 18 18 C 1.46904 * 111.00095 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46826 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.46403 * 179.97438 * 19 18 17 21 21 H 1.08992 * 110.80906 * 305.69751 * 20 19 18 22 22 C 1.54815 * 110.90275 * 182.06971 * 20 19 18 23 23 C 1.54106 * 104.18919 * 220.92411 * 22 20 19 24 24 O 1.43749 * 107.29138 * 357.96998 * 23 22 20 25 25 C 1.44423 * 106.99804 * 26.49183 * 24 23 22 26 26 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46527 * 60.00365 * 10 9 7 28 28 H 1.08993 * 109.47047 * 299.99857 * 10 9 7 29 29 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 31 31 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 32 32 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 33 33 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 34 34 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 35 35 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 36 36 H 1.00907 * 110.99931 * 303.95289 * 17 16 15 37 37 H 1.09001 * 109.46635 * 299.99242 * 18 17 16 38 38 H 1.08996 * 109.47212 * 59.99391 * 18 17 16 39 39 H 1.08996 * 109.46995 * 299.99570 * 19 18 17 40 40 H 1.08993 * 109.47208 * 60.00258 * 19 18 17 41 41 H 1.08994 * 110.48914 * 339.59789 * 22 20 19 42 42 H 1.08998 * 110.48595 * 102.24948 * 22 20 19 43 43 H 1.08995 * 109.88005 * 117.39526 * 23 22 20 44 44 H 1.09002 * 109.87540 * 238.55238 * 23 22 20 45 45 H 1.08998 * 110.64937 * 201.48034 * 25 24 23 46 46 H 1.08993 * 110.60298 * 78.47005 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3431 0.0003 14 6 2.3301 -7.7151 0.0003 15 6 3.5022 -8.6986 0.0001 16 6 2.9656 -10.1314 -0.0006 17 7 4.0909 -11.0757 -0.0001 18 6 3.6126 -12.4647 -0.0013 19 6 4.8105 -13.4165 -0.0014 20 6 4.3123 -14.8631 -0.0021 21 1 3.6239 -15.0360 0.8251 22 6 5.4989 -15.8561 0.0501 23 6 5.0981 -16.9755 -0.9303 24 8 3.7907 -16.6544 -1.4341 25 6 3.6493 -15.2191 -1.3571 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7313 0.8906 28 1 3.1243 -3.7314 -0.8894 29 1 3.8007 -6.1836 0.0006 30 1 1.7219 -7.8752 -0.8900 31 1 1.7213 -7.8751 0.8900 32 1 4.1108 -8.5384 -0.8899 33 1 4.1109 -8.5386 0.8901 34 1 2.3568 -10.2918 0.8892 35 1 2.3573 -10.2911 -0.8908 36 1 4.7066 -10.9049 -0.7810 37 1 3.0078 -12.6414 0.8881 38 1 3.0092 -12.6404 -0.8919 39 1 5.4150 -13.2396 -0.8910 40 1 5.4141 -13.2409 0.8890 41 1 6.4173 -15.3707 -0.2800 42 1 5.6181 -16.2556 1.0572 43 1 5.8116 -17.0206 -1.7531 44 1 5.0696 -17.9322 -0.4088 45 1 2.5967 -14.9361 -1.3555 46 1 4.1761 -14.7372 -2.1806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:46 Heat of formation + Delta-G solvation = -105.713168 kcal Electronic energy + Delta-G solvation = -22389.409421 eV Core-core repulsion = 18825.235152 eV Total energy + Delta-G solvation = -3564.174268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02670 -39.18584 -37.46414 -35.37914 -33.95455 -32.42450 -31.77625 -30.37604 -29.09832 -27.53430 -25.51025 -24.59897 -23.46372 -22.27201 -21.77075 -20.87720 -20.24214 -17.82077 -17.10009 -16.73605 -16.44735 -16.22901 -15.93422 -15.80548 -15.42344 -14.80262 -14.73287 -14.67152 -14.51461 -13.97387 -13.81039 -13.32418 -13.18384 -13.05097 -12.69221 -12.58874 -12.34827 -12.04013 -11.89895 -11.77401 -11.72853 -11.31943 -11.24471 -11.13995 -11.04061 -11.03454 -10.99727 -10.76113 -10.20092 -9.82018 -9.40043 -9.05925 -8.92136 -8.85904 -8.23458 -6.49553 -6.21002 -3.91738 3.02033 3.11040 3.23883 3.27267 3.29978 3.36858 3.60801 3.83657 3.95828 4.17015 4.21114 4.36876 4.48236 4.63164 4.68954 4.70471 4.80508 4.83959 4.90889 4.97580 5.12288 5.14051 5.15487 5.21392 5.22839 5.24880 5.26049 5.36929 5.40470 5.46420 5.51609 5.62960 5.67340 5.71185 5.86105 5.93177 5.98152 6.14650 6.33002 6.51586 6.64102 6.90097 7.59691 7.71952 8.35513 8.62379 9.24127 10.86406 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.059466 B = 0.001347 C = 0.001329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.744079 B =20786.495655 C =21061.250559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.739 5.739 14 C 0.122 3.878 15 C -0.128 4.128 16 C 0.062 3.938 17 N -0.691 5.691 18 C 0.056 3.944 19 C -0.107 4.107 20 C -0.121 4.121 21 H 0.088 0.912 22 C -0.152 4.152 23 C 0.045 3.955 24 O -0.381 6.381 25 C 0.049 3.951 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.340 0.660 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.611 -31.221 -0.811 34.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.068 4.068 17 N -0.322 5.322 18 C -0.073 4.073 19 C -0.145 4.145 20 C -0.140 4.140 21 H 0.106 0.894 22 C -0.190 4.190 23 C -0.031 4.031 24 O -0.300 6.300 25 C -0.028 4.028 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.158 0.842 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.343 -31.582 -0.206 33.558 hybrid contribution 2.337 1.396 -0.831 2.846 sum 13.680 -30.186 -1.037 33.158 Atomic orbital electron populations 1.70010 1.05962 1.27562 1.46780 1.24986 0.95016 0.99002 0.94509 0.86227 0.79241 0.81246 0.78798 1.19948 1.20799 1.19928 1.22834 0.94885 0.91686 1.59084 0.90973 1.85396 1.04973 0.96308 1.96726 1.23532 1.06556 0.95405 1.04927 1.20317 0.86532 0.86322 0.75147 1.90700 1.15400 1.85643 1.47525 1.45982 1.09952 1.05502 1.77960 1.21182 0.95909 0.80782 1.02370 1.21743 0.98113 0.93439 1.03360 1.21853 0.92548 0.91158 1.01249 1.60453 1.18945 1.02644 1.50138 1.22009 0.96633 0.87747 1.00922 1.21532 0.97843 0.91956 1.03156 1.22741 0.97391 0.95032 0.98860 0.89382 1.23004 0.98899 0.96326 1.00782 1.23169 0.85092 0.98663 0.96226 1.88892 1.33536 1.22286 1.85253 1.23700 1.01636 0.81395 0.96027 0.92127 0.89193 0.89236 0.76804 0.91794 0.91558 0.91409 0.90293 0.90484 0.94736 0.84208 0.90738 0.95054 0.91700 0.90416 0.90381 0.90313 0.92400 0.89879 0.88933 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.97 7.85 -10.98 -0.09 9.89 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.83 16 13 N -0.74 -9.77 5.56 -60.29 -0.33 -10.10 16 14 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 15 C -0.13 -0.98 5.59 -26.73 -0.15 -1.13 16 16 C 0.06 0.44 5.69 -3.83 -0.02 0.42 16 17 N -0.69 -4.40 6.50 -113.78 -0.74 -5.14 16 18 C 0.06 0.30 5.56 -3.82 -0.02 0.28 16 19 C -0.11 -0.48 4.87 -26.73 -0.13 -0.61 16 20 C -0.12 -0.57 3.12 -88.61 -0.28 -0.85 16 21 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 22 C -0.15 -0.64 6.60 -25.20 -0.17 -0.81 16 23 C 0.05 0.24 7.70 37.74 0.29 0.53 16 24 O -0.38 -3.11 11.52 -35.23 -0.41 -3.52 16 25 C 0.05 0.28 6.49 38.21 0.25 0.53 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.40 4.04 8.47 -40.82 -0.35 3.70 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.34 1.85 8.73 -39.29 -0.34 1.51 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.17 7.58 -51.93 -0.39 -0.23 16 39 H 0.06 0.27 8.05 -51.93 -0.42 -0.15 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.28 7.86 -51.93 -0.41 -0.13 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 46 H 0.06 0.32 7.98 -51.93 -0.41 -0.09 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -35.02 391.27 -10.12 -45.14 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.21 Total: -1.15 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.08 Total: -6.30 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.34 Total: -40.75 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.32 Total: -15.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.02 -10.12 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.573 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds