Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48498 * 109.46965 * 239.99397 * 3 2 1 5 5 H 1.48500 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47069 * 119.99756 * 3 2 1 7 7 C 1.38796 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47016 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 N 1.46896 * 109.47114 * 180.02562 * 16 15 14 18 18 C 1.46904 * 111.00095 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46826 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.46403 * 179.97438 * 19 18 17 21 21 H 1.08992 * 110.80906 * 305.69751 * 20 19 18 22 22 C 1.54815 * 110.90275 * 182.06971 * 20 19 18 23 23 C 1.54106 * 104.18919 * 220.92411 * 22 20 19 24 24 O 1.43749 * 107.29138 * 357.96998 * 23 22 20 25 25 C 1.44423 * 106.99804 * 26.49183 * 24 23 22 26 26 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46527 * 60.00365 * 10 9 7 28 28 H 1.08993 * 109.47047 * 299.99857 * 10 9 7 29 29 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 31 31 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 32 32 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 33 33 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 34 34 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 35 35 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 36 36 H 1.00907 * 110.99931 * 303.95289 * 17 16 15 37 37 H 1.09001 * 109.46635 * 299.99242 * 18 17 16 38 38 H 1.08996 * 109.47212 * 59.99391 * 18 17 16 39 39 H 1.08996 * 109.46995 * 299.99570 * 19 18 17 40 40 H 1.08993 * 109.47208 * 60.00258 * 19 18 17 41 41 H 1.08994 * 110.48914 * 339.59789 * 22 20 19 42 42 H 1.08998 * 110.48595 * 102.24948 * 22 20 19 43 43 H 1.08995 * 109.88005 * 117.39526 * 23 22 20 44 44 H 1.09002 * 109.87540 * 238.55238 * 23 22 20 45 45 H 1.08998 * 110.64937 * 201.48034 * 25 24 23 46 46 H 1.08993 * 110.60298 * 78.47005 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3431 0.0003 14 6 2.3301 -7.7151 0.0003 15 6 3.5022 -8.6986 0.0001 16 6 2.9656 -10.1314 -0.0006 17 7 4.0909 -11.0757 -0.0001 18 6 3.6126 -12.4647 -0.0013 19 6 4.8105 -13.4165 -0.0014 20 6 4.3123 -14.8631 -0.0021 21 1 3.6239 -15.0360 0.8251 22 6 5.4989 -15.8561 0.0501 23 6 5.0981 -16.9755 -0.9303 24 8 3.7907 -16.6544 -1.4341 25 6 3.6493 -15.2191 -1.3571 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7313 0.8906 28 1 3.1243 -3.7314 -0.8894 29 1 3.8007 -6.1836 0.0006 30 1 1.7219 -7.8752 -0.8900 31 1 1.7213 -7.8751 0.8900 32 1 4.1108 -8.5384 -0.8899 33 1 4.1109 -8.5386 0.8901 34 1 2.3568 -10.2918 0.8892 35 1 2.3573 -10.2911 -0.8908 36 1 4.7066 -10.9049 -0.7810 37 1 3.0078 -12.6414 0.8881 38 1 3.0092 -12.6404 -0.8919 39 1 5.4150 -13.2396 -0.8910 40 1 5.4141 -13.2409 0.8890 41 1 6.4173 -15.3707 -0.2800 42 1 5.6181 -16.2556 1.0572 43 1 5.8116 -17.0206 -1.7531 44 1 5.0696 -17.9322 -0.4088 45 1 2.5967 -14.9361 -1.3555 46 1 4.1761 -14.7372 -2.1806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = -131.928035 kcal Electronic energy + Delta-G solvation = -22390.546182 eV Core-core repulsion = 18825.235152 eV Total energy + Delta-G solvation = -3565.311030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.61475 -40.45187 -38.07307 -36.31810 -34.67287 -34.57408 -32.63593 -31.10798 -30.19284 -28.18261 -27.63532 -25.35948 -23.96680 -22.75938 -22.42543 -21.70896 -21.20577 -19.80622 -17.78545 -17.50993 -17.37570 -17.22325 -16.87124 -16.76855 -16.64908 -16.13177 -15.86040 -15.57370 -15.23410 -15.11966 -14.65335 -14.47808 -14.28132 -14.03191 -13.60002 -13.46770 -13.16484 -13.07740 -12.99824 -12.85377 -12.61287 -12.49148 -12.42251 -12.23410 -11.90282 -11.75229 -11.64860 -11.63533 -11.40579 -11.12215 -10.95449 -10.66459 -10.27605 -10.11796 -9.39403 -8.66590 -8.33865 -6.12413 1.27608 1.44802 1.47709 1.57489 1.61353 2.26159 2.29988 2.93889 3.00316 3.20641 3.33675 3.58388 3.79293 3.93158 3.97754 4.00748 4.11195 4.18399 4.23411 4.27845 4.30875 4.39180 4.42573 4.51829 4.53723 4.60104 4.69418 4.73584 4.77675 4.79865 4.84677 4.87817 5.01063 5.10128 5.17439 5.18752 5.28028 5.34853 5.42137 5.45776 5.90981 6.02766 6.20234 6.46560 6.52610 7.07280 7.25313 8.75194 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.059466 B = 0.001347 C = 0.001329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.744079 B =20786.495655 C =21061.250559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.712 5.712 14 C 0.121 3.879 15 C -0.112 4.112 16 C 0.064 3.936 17 N -0.694 5.694 18 C 0.056 3.944 19 C -0.096 4.096 20 C -0.117 4.117 21 H 0.084 0.916 22 C -0.149 4.149 23 C 0.038 3.962 24 O -0.411 6.411 25 C 0.045 3.955 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.348 0.652 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 -31.500 -0.839 35.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.366 5.366 14 C -0.003 4.003 15 C -0.150 4.150 16 C -0.066 4.066 17 N -0.325 5.325 18 C -0.073 4.073 19 C -0.134 4.134 20 C -0.136 4.136 21 H 0.102 0.898 22 C -0.186 4.186 23 C -0.038 4.038 24 O -0.330 6.330 25 C -0.032 4.032 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.166 0.834 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.399 -31.903 -0.235 35.003 hybrid contribution 1.446 1.320 -0.829 2.126 sum 15.845 -30.583 -1.064 34.460 Atomic orbital electron populations 1.70181 1.08018 1.28679 1.47947 1.26127 0.95940 1.03317 0.93664 0.85004 0.77805 0.75661 0.79523 1.18622 1.20418 1.18623 1.23186 0.95385 0.91990 1.59027 0.89832 1.85589 1.10709 0.99320 1.97071 1.23377 1.03511 0.94300 1.06893 1.20103 0.86250 0.86811 0.75138 1.90690 1.17535 1.86175 1.50296 1.45737 1.10361 1.05154 1.75390 1.21321 0.97372 0.80094 1.01534 1.21598 0.96539 0.92525 1.04337 1.21770 0.92794 0.91031 1.00978 1.60428 1.18667 1.02818 1.50612 1.22012 0.97044 0.87507 1.00700 1.21426 0.97317 0.91333 1.03349 1.22684 0.97483 0.95356 0.98063 0.89808 1.23001 0.98935 0.95790 1.00898 1.23332 0.84261 0.99424 0.96801 1.88856 1.34974 1.23549 1.85666 1.23803 1.01944 0.80575 0.96835 0.91992 0.87116 0.87091 0.74537 0.92595 0.92610 0.89864 0.89769 0.91167 0.94786 0.83393 0.91399 0.94898 0.91003 0.90600 0.89413 0.89614 0.91815 0.89337 0.88945 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.55 7.85 87.66 0.69 20.23 16 12 O -0.57 -26.59 15.86 -3.03 -0.05 -26.63 16 13 N -0.71 -17.34 5.56 -463.05 -2.57 -19.91 16 14 C 0.12 2.54 5.67 86.38 0.49 3.03 16 15 C -0.11 -1.43 5.59 30.60 0.17 -1.26 16 16 C 0.06 0.80 5.69 86.30 0.49 1.29 16 17 N -0.69 -7.37 6.50 -513.89 -3.34 -10.71 16 18 C 0.06 0.53 5.56 86.30 0.48 1.01 16 19 C -0.10 -0.69 4.87 30.60 0.15 -0.54 16 20 C -0.12 -0.96 3.12 -9.49 -0.03 -0.99 16 21 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 22 C -0.15 -1.03 6.60 31.59 0.21 -0.82 16 23 C 0.04 0.38 7.70 72.36 0.56 0.93 16 24 O -0.41 -6.57 11.52 -148.98 -1.72 -8.29 16 25 C 0.04 0.49 6.49 72.67 0.47 0.96 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 29 H 0.42 7.08 8.47 -92.71 -0.79 6.29 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.35 2.87 8.73 -89.69 -0.78 2.08 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.03 0.30 7.58 -2.39 -0.02 0.29 16 39 H 0.07 0.43 8.05 -2.39 -0.02 0.41 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.44 7.86 -2.39 -0.02 0.42 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.95 8.11 -2.39 -0.02 0.93 16 46 H 0.07 0.63 7.98 -2.39 -0.02 0.61 16 Total: -1.00 -77.78 391.27 -1.91 -79.69 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.61 Total: 16.23 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.23 Total: -10.18 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -5.63 Total: -86.49 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.76 Total: -34.92 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -77.78 -1.91 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.238 kcal (2) G-P(sol) polarization free energy of solvation -77.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds