Wall clock time and date at job start Tue Mar 31 2020 11:28:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31629 * 1
3 3 Si 1.86805 * 120.00064 * 2 1
4 4 H 1.48498 * 109.46965 * 239.99397 * 3 2 1
5 5 H 1.48500 * 109.47125 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47069 * 119.99756 * 3 2 1
7 7 C 1.38796 * 120.00067 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1
9 9 S 1.76204 * 119.99910 * 0.02562 * 7 2 1
10 10 C 1.80999 * 100.00065 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47016 * 180.02562 * 10 9 7
12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9
13 13 N 1.34775 * 119.99773 * 180.02562 * 11 10 9
14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10
15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11
16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13
17 17 N 1.46896 * 109.47114 * 180.02562 * 16 15 14
18 18 C 1.46904 * 111.00095 * 180.02562 * 17 16 15
19 19 C 1.53004 * 109.46826 * 179.97438 * 18 17 16
20 20 C 1.53003 * 109.46403 * 179.97438 * 19 18 17
21 21 H 1.08992 * 110.80906 * 305.69751 * 20 19 18
22 22 C 1.54815 * 110.90275 * 182.06971 * 20 19 18
23 23 C 1.54106 * 104.18919 * 220.92411 * 22 20 19
24 24 O 1.43749 * 107.29138 * 357.96998 * 23 22 20
25 25 C 1.44423 * 106.99804 * 26.49183 * 24 23 22
26 26 H 0.97001 * 119.99673 * 0.02562 * 1 2 3
27 27 H 1.08998 * 109.46527 * 60.00365 * 10 9 7
28 28 H 1.08993 * 109.47047 * 299.99857 * 10 9 7
29 29 H 0.96992 * 120.00503 * 359.97438 * 13 11 10
30 30 H 1.09001 * 109.46891 * 60.00097 * 14 13 11
31 31 H 1.08993 * 109.47378 * 299.99469 * 14 13 11
32 32 H 1.09001 * 109.46801 * 300.00349 * 15 14 13
33 33 H 1.09001 * 109.46998 * 59.99945 * 15 14 13
34 34 H 1.08996 * 109.46952 * 300.00302 * 16 15 14
35 35 H 1.09001 * 109.46832 * 60.00321 * 16 15 14
36 36 H 1.00907 * 110.99931 * 303.95289 * 17 16 15
37 37 H 1.09001 * 109.46635 * 299.99242 * 18 17 16
38 38 H 1.08996 * 109.47212 * 59.99391 * 18 17 16
39 39 H 1.08996 * 109.46995 * 299.99570 * 19 18 17
40 40 H 1.08993 * 109.47208 * 60.00258 * 19 18 17
41 41 H 1.08994 * 110.48914 * 339.59789 * 22 20 19
42 42 H 1.08998 * 110.48595 * 102.24948 * 22 20 19
43 43 H 1.08995 * 109.88005 * 117.39526 * 23 22 20
44 44 H 1.09002 * 109.87540 * 238.55238 * 23 22 20
45 45 H 1.08998 * 110.64937 * 201.48034 * 25 24 23
46 46 H 1.08993 * 110.60298 * 78.47005 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1042 1.6963 -1.2124
5 1 1.2854 2.7465 -0.0006
6 1 3.1041 1.6964 1.2126
7 6 2.0103 -1.2020 0.0005
8 1 3.0903 -1.2020 0.0010
9 16 1.1293 -2.7280 0.0005
10 6 2.5158 -3.8914 0.0005
11 6 1.9873 -5.3027 -0.0001
12 8 0.7910 -5.5023 -0.0010
13 7 2.8440 -6.3431 0.0003
14 6 2.3301 -7.7151 0.0003
15 6 3.5022 -8.6986 0.0001
16 6 2.9656 -10.1314 -0.0006
17 7 4.0909 -11.0757 -0.0001
18 6 3.6126 -12.4647 -0.0013
19 6 4.8105 -13.4165 -0.0014
20 6 4.3123 -14.8631 -0.0021
21 1 3.6239 -15.0360 0.8251
22 6 5.4989 -15.8561 0.0501
23 6 5.0981 -16.9755 -0.9303
24 8 3.7907 -16.6544 -1.4341
25 6 3.6493 -15.2191 -1.3571
26 1 -0.4850 0.8401 -0.0004
27 1 3.1243 -3.7313 0.8906
28 1 3.1243 -3.7314 -0.8894
29 1 3.8007 -6.1836 0.0006
30 1 1.7219 -7.8752 -0.8900
31 1 1.7213 -7.8751 0.8900
32 1 4.1108 -8.5384 -0.8899
33 1 4.1109 -8.5386 0.8901
34 1 2.3568 -10.2918 0.8892
35 1 2.3573 -10.2911 -0.8908
36 1 4.7066 -10.9049 -0.7810
37 1 3.0078 -12.6414 0.8881
38 1 3.0092 -12.6404 -0.8919
39 1 5.4150 -13.2396 -0.8910
40 1 5.4141 -13.2409 0.8890
41 1 6.4173 -15.3707 -0.2800
42 1 5.6181 -16.2556 1.0572
43 1 5.8116 -17.0206 -1.7531
44 1 5.0696 -17.9322 -0.4088
45 1 2.5967 -14.9361 -1.3555
46 1 4.1761 -14.7372 -2.1806
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001154814801.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:44
Heat of formation + Delta-G solvation = -131.928035 kcal
Electronic energy + Delta-G solvation = -22390.546182 eV
Core-core repulsion = 18825.235152 eV
Total energy + Delta-G solvation = -3565.311030 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.161 amu
Computer time = 2.18 seconds
Orbital eigenvalues (eV)
-40.61475 -40.45187 -38.07307 -36.31810 -34.67287 -34.57408 -32.63593 -31.10798
-30.19284 -28.18261 -27.63532 -25.35948 -23.96680 -22.75938 -22.42543 -21.70896
-21.20577 -19.80622 -17.78545 -17.50993 -17.37570 -17.22325 -16.87124 -16.76855
-16.64908 -16.13177 -15.86040 -15.57370 -15.23410 -15.11966 -14.65335 -14.47808
-14.28132 -14.03191 -13.60002 -13.46770 -13.16484 -13.07740 -12.99824 -12.85377
-12.61287 -12.49148 -12.42251 -12.23410 -11.90282 -11.75229 -11.64860 -11.63533
-11.40579 -11.12215 -10.95449 -10.66459 -10.27605 -10.11796 -9.39403 -8.66590
-8.33865 -6.12413 1.27608 1.44802 1.47709 1.57489 1.61353 2.26159
2.29988 2.93889 3.00316 3.20641 3.33675 3.58388 3.79293 3.93158
3.97754 4.00748 4.11195 4.18399 4.23411 4.27845 4.30875 4.39180
4.42573 4.51829 4.53723 4.60104 4.69418 4.73584 4.77675 4.79865
4.84677 4.87817 5.01063 5.10128 5.17439 5.18752 5.28028 5.34853
5.42137 5.45776 5.90981 6.02766 6.20234 6.46560 6.52610 7.07280
7.25313 8.75194
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.059466 B = 0.001347 C = 0.001329
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 470.744079 B =20786.495655 C =21061.250559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.014 3.986
3 Si 0.999 3.001
4 H -0.262 1.262
5 H -0.279 1.279
6 H -0.262 1.262
7 C -0.548 4.548
8 H 0.084 0.916
9 S -0.154 6.154
10 C -0.130 4.130
11 C 0.531 3.469
12 O -0.568 6.568
13 N -0.712 5.712
14 C 0.121 3.879
15 C -0.112 4.112
16 C 0.064 3.936
17 N -0.694 5.694
18 C 0.056 3.944
19 C -0.096 4.096
20 C -0.117 4.117
21 H 0.084 0.916
22 C -0.149 4.149
23 C 0.038 3.962
24 O -0.411 6.411
25 C 0.045 3.955
26 H 0.271 0.729
27 H 0.111 0.889
28 H 0.111 0.889
29 H 0.417 0.583
30 H 0.056 0.944
31 H 0.055 0.945
32 H 0.083 0.917
33 H 0.084 0.916
34 H 0.070 0.930
35 H 0.034 0.966
36 H 0.348 0.652
37 H 0.067 0.933
38 H 0.033 0.967
39 H 0.071 0.929
40 H 0.075 0.925
41 H 0.087 0.913
42 H 0.085 0.915
43 H 0.064 0.936
44 H 0.088 0.912
45 H 0.092 0.908
46 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.599 -31.500 -0.839 35.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.190 4.190
3 Si 0.820 3.180
4 H -0.186 1.186
5 H -0.204 1.204
6 H -0.186 1.186
7 C -0.696 4.696
8 H 0.102 0.898
9 S 0.073 5.927
10 C -0.281 4.281
11 C 0.317 3.683
12 O -0.447 6.447
13 N -0.366 5.366
14 C -0.003 4.003
15 C -0.150 4.150
16 C -0.066 4.066
17 N -0.325 5.325
18 C -0.073 4.073
19 C -0.134 4.134
20 C -0.136 4.136
21 H 0.102 0.898
22 C -0.186 4.186
23 C -0.038 4.038
24 O -0.330 6.330
25 C -0.032 4.032
26 H 0.080 0.920
27 H 0.129 0.871
28 H 0.129 0.871
29 H 0.255 0.745
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.101 0.899
33 H 0.102 0.898
34 H 0.088 0.912
35 H 0.052 0.948
36 H 0.166 0.834
37 H 0.086 0.914
38 H 0.051 0.949
39 H 0.090 0.910
40 H 0.094 0.906
41 H 0.106 0.894
42 H 0.104 0.896
43 H 0.082 0.918
44 H 0.107 0.893
45 H 0.111 0.889
46 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 14.399 -31.903 -0.235 35.003
hybrid contribution 1.446 1.320 -0.829 2.126
sum 15.845 -30.583 -1.064 34.460
Atomic orbital electron populations
1.70181 1.08018 1.28679 1.47947 1.26127 0.95940 1.03317 0.93664
0.85004 0.77805 0.75661 0.79523 1.18622 1.20418 1.18623 1.23186
0.95385 0.91990 1.59027 0.89832 1.85589 1.10709 0.99320 1.97071
1.23377 1.03511 0.94300 1.06893 1.20103 0.86250 0.86811 0.75138
1.90690 1.17535 1.86175 1.50296 1.45737 1.10361 1.05154 1.75390
1.21321 0.97372 0.80094 1.01534 1.21598 0.96539 0.92525 1.04337
1.21770 0.92794 0.91031 1.00978 1.60428 1.18667 1.02818 1.50612
1.22012 0.97044 0.87507 1.00700 1.21426 0.97317 0.91333 1.03349
1.22684 0.97483 0.95356 0.98063 0.89808 1.23001 0.98935 0.95790
1.00898 1.23332 0.84261 0.99424 0.96801 1.88856 1.34974 1.23549
1.85666 1.23803 1.01944 0.80575 0.96835 0.91992 0.87116 0.87091
0.74537 0.92595 0.92610 0.89864 0.89769 0.91167 0.94786 0.83393
0.91399 0.94898 0.91003 0.90600 0.89413 0.89614 0.91815 0.89337
0.88945 0.91560
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16
2 C 0.01 0.81 5.49 84.86 0.47 1.28 16
3 Si 1.00 43.39 29.55 68.60 2.03 45.42 16
4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16
6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16
7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16
8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16
9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16
10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16
11 C 0.53 19.55 7.85 87.66 0.69 20.23 16
12 O -0.57 -26.59 15.86 -3.03 -0.05 -26.63 16
13 N -0.71 -17.34 5.56 -463.05 -2.57 -19.91 16
14 C 0.12 2.54 5.67 86.38 0.49 3.03 16
15 C -0.11 -1.43 5.59 30.60 0.17 -1.26 16
16 C 0.06 0.80 5.69 86.30 0.49 1.29 16
17 N -0.69 -7.37 6.50 -513.89 -3.34 -10.71 16
18 C 0.06 0.53 5.56 86.30 0.48 1.01 16
19 C -0.10 -0.69 4.87 30.60 0.15 -0.54 16
20 C -0.12 -0.96 3.12 -9.49 -0.03 -0.99 16
21 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
22 C -0.15 -1.03 6.60 31.59 0.21 -0.82 16
23 C 0.04 0.38 7.70 72.36 0.56 0.93 16
24 O -0.41 -6.57 11.52 -148.98 -1.72 -8.29 16
25 C 0.04 0.49 6.49 72.67 0.47 0.96 16
26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16
27 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16
28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16
29 H 0.42 7.08 8.47 -92.71 -0.79 6.29 16
30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
35 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16
36 H 0.35 2.87 8.73 -89.69 -0.78 2.08 16
37 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16
38 H 0.03 0.30 7.58 -2.39 -0.02 0.29 16
39 H 0.07 0.43 8.05 -2.39 -0.02 0.41 16
40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
41 H 0.09 0.44 7.86 -2.39 -0.02 0.42 16
42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16
43 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
45 H 0.09 0.95 8.11 -2.39 -0.02 0.93 16
46 H 0.07 0.63 7.98 -2.39 -0.02 0.61 16
Total: -1.00 -77.78 391.27 -1.91 -79.69
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: -0.61 Total: 16.23 kcal
Atomic # 6 Polarization: -15.40 SS G_CDS: 5.23 Total: -10.18 kcal
Atomic # 7 Polarization: -80.86 SS G_CDS: -5.63 Total: -86.49 kcal
Atomic # 8 Polarization: -33.16 SS G_CDS: -1.76 Total: -34.92 kcal
Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal
Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal
Total: -77.78 -1.91 -79.69 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001154814801.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.238 kcal
(2) G-P(sol) polarization free energy of solvation -77.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.18 seconds