Wall clock time and date at job start Tue Mar 31 2020 11:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47523 * 240.00092 * 3 2 1 5 5 H 1.48498 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47074 * 120.00405 * 3 2 1 7 7 C 1.38799 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99987 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47555 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46998 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.46904 * 179.97438 * 16 15 14 18 18 C 1.46898 * 110.99895 * 179.97438 * 17 16 15 19 19 C 1.53007 * 109.46771 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46930 * 180.02562 * 19 18 17 21 21 H 1.08994 * 110.45666 * 52.39745 * 20 19 18 22 22 C 1.54503 * 110.51053 * 175.00550 * 20 19 18 23 23 C 1.54480 * 104.06527 * 118.64547 * 22 20 19 24 24 O 1.44429 * 104.80197 * 23.97801 * 23 22 20 25 25 C 1.44421 * 105.27284 * 319.49050 * 24 23 22 26 26 H 0.97009 * 119.99700 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47557 * 59.99734 * 10 9 7 28 28 H 1.09004 * 109.46955 * 299.99812 * 10 9 7 29 29 H 0.97010 * 119.99849 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47175 * 60.00333 * 14 13 11 31 31 H 1.09001 * 109.47297 * 299.99840 * 14 13 11 32 32 H 1.08993 * 109.46955 * 300.00226 * 15 14 13 33 33 H 1.09000 * 109.47050 * 60.00054 * 15 14 13 34 34 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 35 35 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 36 36 H 1.00901 * 110.99687 * 56.05002 * 17 16 15 37 37 H 1.08995 * 109.47632 * 300.00548 * 18 17 16 38 38 H 1.09005 * 109.46845 * 60.01122 * 18 17 16 39 39 H 1.08995 * 109.47532 * 300.00661 * 19 18 17 40 40 H 1.09005 * 109.46478 * 60.00948 * 19 18 17 41 41 H 1.08999 * 110.50926 * 237.28886 * 22 20 19 42 42 H 1.09000 * 110.51539 * 0.02562 * 22 20 19 43 43 H 1.08994 * 110.37312 * 142.80785 * 23 22 20 44 44 H 1.08997 * 110.36958 * 265.14735 * 23 22 20 45 45 H 1.09005 * 110.37088 * 281.67694 * 25 24 23 46 46 H 1.09001 * 110.37291 * 159.34629 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0019 10 6 2.5156 -3.8914 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8438 -6.3432 -0.0049 14 6 2.3301 -7.7151 -0.0050 15 6 3.5022 -8.6986 -0.0060 16 6 2.9655 -10.1314 -0.0054 17 7 4.0908 -11.0757 -0.0069 18 6 3.6125 -12.4647 -0.0058 19 6 4.8104 -13.4166 -0.0081 20 6 4.3122 -14.8632 -0.0076 21 1 3.5976 -15.0203 -0.8154 22 6 5.4988 -15.8444 -0.1359 23 6 5.4415 -16.6750 1.1654 24 8 4.0668 -16.5865 1.5994 25 6 3.6784 -15.2170 1.3560 26 1 -0.4850 0.8401 0.0004 27 1 3.1244 -3.7322 0.8872 28 1 3.1243 -3.7306 -0.8928 29 1 3.8007 -6.1836 -0.0051 30 1 1.7206 -7.8748 -0.8944 31 1 1.7224 -7.8756 0.8856 32 1 4.1102 -8.5383 -0.8962 33 1 4.1113 -8.5388 0.8837 34 1 2.3577 -10.2915 0.8851 35 1 2.3561 -10.2915 -0.8948 36 1 4.7070 -10.9052 0.7737 37 1 3.0097 -12.6407 0.8851 38 1 3.0070 -12.6411 -0.8949 39 1 5.4128 -13.2404 -0.8993 40 1 5.4162 -13.2402 0.8807 41 1 5.3695 -16.4883 -1.0059 42 1 6.4403 -15.2990 -0.1993 43 1 5.7104 -17.7122 0.9657 44 1 6.1051 -16.2481 1.9174 45 1 4.0716 -14.5665 2.1374 46 1 2.5929 -15.1342 1.3029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:49 Heat of formation + Delta-G solvation = -105.424793 kcal Electronic energy + Delta-G solvation = -22412.233706 eV Core-core repulsion = 18848.071943 eV Total energy + Delta-G solvation = -3564.161763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05360 -39.18605 -37.45469 -35.37269 -33.94973 -32.42452 -31.75931 -30.31938 -29.09018 -27.51547 -25.50921 -24.57525 -23.55841 -22.37303 -21.76171 -20.77584 -20.23948 -17.82172 -17.00114 -16.76369 -16.36440 -16.22960 -15.95662 -15.88737 -15.42615 -14.81065 -14.78038 -14.72313 -14.51337 -13.93757 -13.67969 -13.35242 -13.15415 -13.02134 -12.69783 -12.58930 -12.36845 -11.98474 -11.89219 -11.82346 -11.72959 -11.29436 -11.24125 -11.09690 -11.04095 -11.03328 -10.98618 -10.76108 -10.31266 -9.82076 -9.40096 -9.05954 -8.92255 -8.85997 -8.23515 -6.49610 -6.21066 -3.91768 3.02047 3.10961 3.23844 3.27433 3.30327 3.41430 3.59965 3.82665 4.00625 4.16955 4.21094 4.39151 4.49169 4.61904 4.68752 4.72569 4.80906 4.83360 4.91624 4.97240 5.11198 5.13984 5.15608 5.21037 5.21550 5.25102 5.29166 5.38592 5.40418 5.45154 5.51609 5.63234 5.67223 5.70949 5.85994 5.93068 5.98063 6.14558 6.26248 6.51610 6.64043 6.90048 7.59640 7.71823 8.35448 8.62301 9.24055 10.86327 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.057333 B = 0.001353 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.258585 B =20694.409392 C =20947.146098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.739 5.739 14 C 0.122 3.878 15 C -0.128 4.128 16 C 0.062 3.938 17 N -0.691 5.691 18 C 0.056 3.944 19 C -0.109 4.109 20 C -0.121 4.121 21 H 0.086 0.914 22 C -0.152 4.152 23 C 0.043 3.957 24 O -0.378 6.378 25 C 0.047 3.953 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.340 0.660 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.625 -31.117 0.804 33.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.068 4.068 17 N -0.322 5.322 18 C -0.073 4.073 19 C -0.146 4.146 20 C -0.141 4.141 21 H 0.104 0.896 22 C -0.189 4.189 23 C -0.034 4.034 24 O -0.297 6.297 25 C -0.030 4.030 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.376 -31.495 0.209 33.487 hybrid contribution 2.274 1.441 0.814 2.813 sum 13.651 -30.053 1.024 33.024 Atomic orbital electron populations 1.70013 1.05961 1.27558 1.46777 1.24987 0.95020 0.99007 0.94511 0.86224 0.79237 0.81238 0.78796 1.19932 1.20801 1.19950 1.22833 0.94887 0.91689 1.59084 0.90973 1.85393 1.04971 0.96304 1.96724 1.23534 1.06554 0.95402 1.04927 1.20317 0.86533 0.86323 0.75147 1.90701 1.15400 1.85645 1.47530 1.45984 1.09954 1.05500 1.77954 1.21182 0.95908 0.80782 1.02367 1.21742 0.98112 0.93439 1.03360 1.21855 0.92554 0.91162 1.01240 1.60458 1.18905 1.02655 1.50156 1.22014 0.96668 0.87756 1.00894 1.21632 0.97805 0.92115 1.03089 1.22547 0.97712 0.95119 0.98702 0.89594 1.23015 0.98978 0.98050 0.98901 1.23431 0.84130 1.01096 0.94724 1.89140 1.27233 1.28054 1.85236 1.23571 1.00637 0.83442 0.95313 0.92129 0.89238 0.89193 0.76801 0.91555 0.91800 0.90291 0.91411 0.94742 0.90488 0.84219 0.95073 0.90755 0.90446 0.91755 0.90529 0.90165 0.89124 0.92277 0.92160 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.97 7.85 -10.99 -0.09 9.89 16 12 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 13 N -0.74 -9.77 5.56 -60.29 -0.33 -10.11 16 14 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 15 C -0.13 -0.99 5.59 -26.73 -0.15 -1.14 16 16 C 0.06 0.44 5.69 -3.82 -0.02 0.42 16 17 N -0.69 -4.43 6.50 -113.78 -0.74 -5.17 16 18 C 0.06 0.31 5.56 -3.82 -0.02 0.28 16 19 C -0.11 -0.49 4.69 -26.72 -0.13 -0.62 16 20 C -0.12 -0.57 3.11 -89.05 -0.28 -0.85 16 21 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 22 C -0.15 -0.65 6.74 -25.17 -0.17 -0.82 16 23 C 0.04 0.23 7.63 37.93 0.29 0.52 16 24 O -0.38 -3.07 11.65 -35.23 -0.41 -3.48 16 25 C 0.05 0.27 6.51 37.93 0.25 0.52 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 28 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 29 H 0.40 4.05 8.47 -40.82 -0.35 3.70 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.34 1.87 8.73 -39.29 -0.34 1.53 16 37 H 0.03 0.17 7.63 -51.93 -0.40 -0.23 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.28 7.96 -51.93 -0.41 -0.14 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.28 7.73 -51.93 -0.40 -0.12 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.32 7.75 -51.93 -0.40 -0.08 16 46 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -35.03 390.95 -10.11 -45.14 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -8.19 Total: -1.09 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.08 Total: -6.36 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.34 Total: -40.79 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.32 Total: -15.31 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.03 -10.11 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.282 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds