Wall clock time and date at job start Tue Mar 31 2020 11:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47523 * 240.00092 * 3 2 1 5 5 H 1.48498 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47074 * 120.00405 * 3 2 1 7 7 C 1.38799 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99987 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47555 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46998 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.46904 * 179.97438 * 16 15 14 18 18 C 1.46898 * 110.99895 * 179.97438 * 17 16 15 19 19 C 1.53007 * 109.46771 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46930 * 180.02562 * 19 18 17 21 21 H 1.08994 * 110.45666 * 52.39745 * 20 19 18 22 22 C 1.54503 * 110.51053 * 175.00550 * 20 19 18 23 23 C 1.54480 * 104.06527 * 118.64547 * 22 20 19 24 24 O 1.44429 * 104.80197 * 23.97801 * 23 22 20 25 25 C 1.44421 * 105.27284 * 319.49050 * 24 23 22 26 26 H 0.97009 * 119.99700 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47557 * 59.99734 * 10 9 7 28 28 H 1.09004 * 109.46955 * 299.99812 * 10 9 7 29 29 H 0.97010 * 119.99849 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47175 * 60.00333 * 14 13 11 31 31 H 1.09001 * 109.47297 * 299.99840 * 14 13 11 32 32 H 1.08993 * 109.46955 * 300.00226 * 15 14 13 33 33 H 1.09000 * 109.47050 * 60.00054 * 15 14 13 34 34 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 35 35 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 36 36 H 1.00901 * 110.99687 * 56.05002 * 17 16 15 37 37 H 1.08995 * 109.47632 * 300.00548 * 18 17 16 38 38 H 1.09005 * 109.46845 * 60.01122 * 18 17 16 39 39 H 1.08995 * 109.47532 * 300.00661 * 19 18 17 40 40 H 1.09005 * 109.46478 * 60.00948 * 19 18 17 41 41 H 1.08999 * 110.50926 * 237.28886 * 22 20 19 42 42 H 1.09000 * 110.51539 * 0.02562 * 22 20 19 43 43 H 1.08994 * 110.37312 * 142.80785 * 23 22 20 44 44 H 1.08997 * 110.36958 * 265.14735 * 23 22 20 45 45 H 1.09005 * 110.37088 * 281.67694 * 25 24 23 46 46 H 1.09001 * 110.37291 * 159.34629 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0019 10 6 2.5156 -3.8914 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8438 -6.3432 -0.0049 14 6 2.3301 -7.7151 -0.0050 15 6 3.5022 -8.6986 -0.0060 16 6 2.9655 -10.1314 -0.0054 17 7 4.0908 -11.0757 -0.0069 18 6 3.6125 -12.4647 -0.0058 19 6 4.8104 -13.4166 -0.0081 20 6 4.3122 -14.8632 -0.0076 21 1 3.5976 -15.0203 -0.8154 22 6 5.4988 -15.8444 -0.1359 23 6 5.4415 -16.6750 1.1654 24 8 4.0668 -16.5865 1.5994 25 6 3.6784 -15.2170 1.3560 26 1 -0.4850 0.8401 0.0004 27 1 3.1244 -3.7322 0.8872 28 1 3.1243 -3.7306 -0.8928 29 1 3.8007 -6.1836 -0.0051 30 1 1.7206 -7.8748 -0.8944 31 1 1.7224 -7.8756 0.8856 32 1 4.1102 -8.5383 -0.8962 33 1 4.1113 -8.5388 0.8837 34 1 2.3577 -10.2915 0.8851 35 1 2.3561 -10.2915 -0.8948 36 1 4.7070 -10.9052 0.7737 37 1 3.0097 -12.6407 0.8851 38 1 3.0070 -12.6411 -0.8949 39 1 5.4128 -13.2404 -0.8993 40 1 5.4162 -13.2402 0.8807 41 1 5.3695 -16.4883 -1.0059 42 1 6.4403 -15.2990 -0.1993 43 1 5.7104 -17.7122 0.9657 44 1 6.1051 -16.2481 1.9174 45 1 4.0716 -14.5665 2.1374 46 1 2.5929 -15.1342 1.3029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:48 Heat of formation + Delta-G solvation = -131.672655 kcal Electronic energy + Delta-G solvation = -22413.371899 eV Core-core repulsion = 18848.071943 eV Total energy + Delta-G solvation = -3565.299956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61662 -40.47508 -38.06701 -36.31339 -34.66810 -34.57390 -32.62789 -31.06291 -30.16572 -28.16630 -27.63384 -25.33565 -24.05069 -22.84070 -22.45436 -21.69651 -21.11024 -19.80752 -17.78625 -17.42161 -17.38220 -17.20685 -16.87135 -16.71363 -16.66192 -16.22052 -15.86478 -15.56621 -15.27257 -15.19789 -14.65938 -14.45013 -14.17553 -14.01755 -13.57014 -13.44870 -13.16522 -13.08053 -12.99326 -12.85396 -12.61865 -12.50677 -12.35301 -12.30337 -11.89853 -11.74917 -11.65616 -11.58094 -11.37770 -11.12248 -10.95432 -10.77715 -10.27679 -10.11930 -9.39895 -8.66658 -8.33936 -6.12451 1.27569 1.44759 1.47666 1.57442 1.61242 2.26092 2.29924 2.99373 3.00243 3.19472 3.33533 3.62357 3.78386 3.93639 3.98645 4.01203 4.10943 4.19138 4.23282 4.27563 4.30770 4.40011 4.43283 4.51708 4.53846 4.59147 4.69121 4.72529 4.77867 4.80036 4.83073 4.91231 5.01540 5.09489 5.17175 5.18872 5.27730 5.33992 5.42080 5.45644 5.84945 6.02546 6.20157 6.46048 6.52390 7.07199 7.25177 8.75108 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.057333 B = 0.001353 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.258585 B =20694.409392 C =20947.146098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.712 5.712 14 C 0.121 3.879 15 C -0.112 4.112 16 C 0.064 3.936 17 N -0.694 5.694 18 C 0.056 3.944 19 C -0.098 4.098 20 C -0.118 4.118 21 H 0.083 0.917 22 C -0.149 4.149 23 C 0.036 3.964 24 O -0.408 6.408 25 C 0.043 3.957 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.347 0.653 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.574 -31.395 0.811 35.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.366 5.366 14 C -0.003 4.003 15 C -0.150 4.150 16 C -0.066 4.066 17 N -0.325 5.325 18 C -0.073 4.073 19 C -0.136 4.136 20 C -0.137 4.137 21 H 0.102 0.898 22 C -0.186 4.186 23 C -0.040 4.040 24 O -0.327 6.327 25 C -0.033 4.033 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.393 -31.815 0.217 34.920 hybrid contribution 1.399 1.368 0.819 2.121 sum 15.792 -30.447 1.037 34.314 Atomic orbital electron populations 1.70185 1.08016 1.28676 1.47942 1.26129 0.95945 1.03322 0.93667 0.85000 0.77801 0.75654 0.79520 1.18627 1.20419 1.18625 1.23185 0.95385 0.91993 1.59028 0.89833 1.85586 1.10706 0.99317 1.97070 1.23379 1.03511 0.94296 1.06893 1.20103 0.86251 0.86811 0.75138 1.90690 1.17534 1.86177 1.50301 1.45739 1.10364 1.05153 1.75385 1.21321 0.97367 0.80092 1.01535 1.21597 0.96542 0.92525 1.04333 1.21773 0.92794 0.91032 1.00976 1.60435 1.18633 1.02835 1.50617 1.22017 0.97066 0.87507 1.00683 1.21528 0.97287 0.91537 1.03239 1.22501 0.97827 0.95393 0.97973 0.89835 1.23013 0.99249 0.97904 0.98478 1.23602 0.83092 1.01932 0.95354 1.89105 1.28740 1.29230 1.85662 1.23667 1.00843 0.82771 0.96055 0.91994 0.87093 0.87116 0.74533 0.92599 0.92600 0.89764 0.89878 0.94799 0.91148 0.83425 0.94951 0.91356 0.90604 0.91165 0.90291 0.89028 0.88405 0.91579 0.91715 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.55 7.85 87.66 0.69 20.24 16 12 O -0.57 -26.59 15.86 -3.04 -0.05 -26.64 16 13 N -0.71 -17.35 5.56 -463.05 -2.57 -19.92 16 14 C 0.12 2.54 5.67 86.38 0.49 3.03 16 15 C -0.11 -1.43 5.59 30.60 0.17 -1.26 16 16 C 0.06 0.80 5.69 86.30 0.49 1.29 16 17 N -0.69 -7.43 6.50 -513.88 -3.34 -10.77 16 18 C 0.06 0.53 5.56 86.31 0.48 1.01 16 19 C -0.10 -0.71 4.69 30.60 0.14 -0.57 16 20 C -0.12 -0.97 3.11 -9.78 -0.03 -1.00 16 21 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 22 C -0.15 -1.07 6.74 31.61 0.21 -0.85 16 23 C 0.04 0.35 7.63 72.49 0.55 0.90 16 24 O -0.41 -6.45 11.65 -148.98 -1.74 -8.19 16 25 C 0.04 0.47 6.51 72.48 0.47 0.94 16 26 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 27 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 28 H 0.11 3.89 8.14 -2.39 -0.02 3.88 16 29 H 0.42 7.08 8.47 -92.70 -0.79 6.30 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.35 2.92 8.73 -89.69 -0.78 2.13 16 37 H 0.03 0.30 7.63 -2.39 -0.02 0.29 16 38 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.45 7.96 -2.38 -0.02 0.43 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.45 7.73 -2.39 -0.02 0.43 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.06 0.62 7.75 -2.38 -0.02 0.61 16 46 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.75 390.95 -1.93 -79.69 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.61 Total: 16.32 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.22 Total: -10.31 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -5.63 Total: -86.55 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.78 Total: -34.83 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -77.75 -1.93 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.985 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds