Wall clock time and date at job start Tue Mar 31 2020 11:18:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86795 * 120.00275 * 2 1
4 4 H 1.48492 * 109.47389 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47204 * 300.00516 * 3 2 1
6 6 H 1.48504 * 109.46924 * 60.00057 * 3 2 1
7 7 C 1.38804 * 119.99645 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99655 * 179.97438 * 7 2 1
9 9 S 1.76201 * 120.00212 * 359.97438 * 7 2 1
10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2
11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7
12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9
13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9
14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10
15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11
16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13
17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14
18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15
19 19 C 1.52993 * 109.47039 * 180.02562 * 18 17 16
20 20 H 1.08999 * 109.48468 * 60.02077 * 19 18 17
21 21 C 1.53090 * 109.48166 * 180.02562 * 19 18 17
22 22 C 1.53176 * 109.16375 * 177.58890 * 21 19 18
23 23 C 1.53170 * 109.04144 * 303.01880 * 22 21 19
24 24 C 1.53093 * 109.16186 * 56.97718 * 23 22 21
25 25 O 1.42904 * 109.41871 * 302.39690 * 24 23 22
26 26 H 0.97002 * 120.00199 * 359.97438 * 1 2 3
27 27 H 1.09001 * 109.47463 * 59.99871 * 10 9 7
28 28 H 1.09005 * 109.47601 * 300.00003 * 10 9 7
29 29 H 0.97006 * 119.99601 * 359.97438 * 13 11 10
30 30 H 1.08993 * 109.46962 * 59.99400 * 14 13 11
31 31 H 1.09005 * 109.46850 * 300.00153 * 14 13 11
32 32 H 1.08995 * 109.47485 * 60.00430 * 15 14 13
33 33 H 1.08996 * 109.47010 * 299.99222 * 15 14 13
34 34 H 1.09004 * 109.46889 * 60.00145 * 16 15 14
35 35 H 1.08995 * 109.47384 * 299.99786 * 16 15 14
36 36 H 1.00901 * 111.00067 * 303.95263 * 17 16 15
37 37 H 1.09001 * 109.46798 * 300.00327 * 18 17 16
38 38 H 1.08998 * 109.46961 * 60.00043 * 18 17 16
39 39 H 1.08995 * 109.52505 * 297.49550 * 21 19 18
40 40 H 1.09005 * 109.52279 * 57.68528 * 21 19 18
41 41 H 1.09010 * 109.54477 * 183.15395 * 22 21 19
42 42 H 1.09000 * 109.61496 * 62.93470 * 22 21 19
43 43 H 1.09010 * 109.52152 * 297.07884 * 23 22 21
44 44 H 1.08998 * 109.58144 * 176.91676 * 23 22 21
45 45 H 1.08997 * 109.48287 * 182.40808 * 24 23 22
46 46 H 1.09003 * 109.48662 * 62.38302 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3964 -1.2124
6 1 1.8916 2.3963 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0010
9 16 1.1292 -2.7280 -0.0005
10 6 2.5157 -3.8914 -0.0005
11 6 1.9872 -5.3027 -0.0012
12 8 0.7909 -5.5023 -0.0011
13 7 2.8440 -6.3432 -0.0008
14 6 2.3302 -7.7152 -0.0008
15 6 3.5023 -8.6986 -0.0009
16 6 2.9657 -10.1314 -0.0003
17 7 4.0910 -11.0757 -0.0011
18 6 3.6127 -12.4647 -0.0012
19 6 4.8105 -13.4165 -0.0013
20 1 5.4146 -13.2408 0.8888
21 6 4.3124 -14.8641 -0.0020
22 6 5.5157 -15.8099 -0.0630
23 6 6.3474 -15.4809 -1.3064
24 6 6.7670 -14.0094 -1.2554
25 8 5.6022 -13.1860 -1.1684
26 1 -0.4850 0.8400 0.0004
27 1 3.1244 -3.7314 0.8894
28 1 3.1244 -3.7314 -0.8905
29 1 3.8008 -6.1836 -0.0004
30 1 1.7219 -7.8753 -0.8909
31 1 1.7213 -7.8751 0.8890
32 1 4.1109 -8.5386 0.8890
33 1 4.1107 -8.5385 -0.8910
34 1 2.3568 -10.2917 -0.8901
35 1 2.3574 -10.2913 0.8899
36 1 4.7056 -10.9052 -0.7830
37 1 3.0090 -12.6411 0.8891
38 1 3.0082 -12.6407 -0.8909
39 1 3.7451 -15.0546 0.9090
40 1 3.6747 -15.0295 -0.8705
41 1 5.1665 -16.8410 -0.1203
42 1 6.1278 -15.6814 0.8297
43 1 5.7508 -15.6587 -2.2013
44 1 7.2356 -16.1123 -1.3294
45 1 7.3230 -13.7584 -2.1586
46 1 7.3971 -13.8411 -0.3820
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001154815050.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:18:04
Heat of formation + Delta-G solvation = -108.637904 kcal
Electronic energy + Delta-G solvation = -22771.872266 eV
Core-core repulsion = 19207.571172 eV
Total energy + Delta-G solvation = -3564.301094 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.161 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-39.94602 -39.13642 -37.01811 -34.90653 -34.11019 -32.66896 -32.40843 -30.86955
-28.99505 -26.88423 -25.48785 -24.79890 -23.69933 -22.25136 -21.63855 -20.72288
-20.21181 -17.80173 -17.04522 -16.62004 -16.27121 -16.14166 -16.00138 -15.52776
-15.16765 -14.91437 -14.78754 -14.65176 -14.33909 -13.88845 -13.73099 -13.41239
-13.16942 -13.06652 -12.72457 -12.57025 -12.29863 -11.98318 -11.85556 -11.70865
-11.63099 -11.58340 -11.15171 -11.07267 -11.03985 -10.99784 -10.75978 -10.71807
-9.89236 -9.78418 -9.36468 -9.05883 -8.84874 -8.76919 -8.20560 -6.47631
-6.19890 -3.90115 3.05553 3.14509 3.23070 3.29273 3.30021 3.34293
3.62050 3.87330 4.22330 4.25725 4.33213 4.35714 4.54907 4.67611
4.70803 4.80019 4.88602 4.91564 4.96590 5.08520 5.15377 5.17922
5.22401 5.26182 5.27361 5.34324 5.40088 5.41384 5.47306 5.51298
5.58598 5.61004 5.70022 5.77834 5.90418 5.98317 6.04010 6.17441
6.59133 6.69050 6.79623 7.06565 7.61905 7.76118 8.37475 8.66027
9.25588 10.87658
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.045875 B = 0.001479 C = 0.001444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 610.202767 B =18925.351000 C =19385.100302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.535 4.535
8 H 0.073 0.927
9 S -0.062 6.062
10 C -0.153 4.153
11 C 0.531 3.469
12 O -0.519 6.519
13 N -0.739 5.739
14 C 0.123 3.877
15 C -0.128 4.128
16 C 0.061 3.939
17 N -0.688 5.688
18 C 0.068 3.932
19 C 0.092 3.908
20 H 0.067 0.933
21 C -0.151 4.151
22 C -0.122 4.122
23 C -0.158 4.158
24 C 0.063 3.937
25 O -0.380 6.380
26 H 0.268 0.732
27 H 0.090 0.910
28 H 0.089 0.911
29 H 0.398 0.602
30 H 0.064 0.936
31 H 0.066 0.934
32 H 0.078 0.922
33 H 0.068 0.932
34 H 0.034 0.966
35 H 0.076 0.924
36 H 0.350 0.650
37 H 0.085 0.915
38 H 0.038 0.962
39 H 0.075 0.925
40 H 0.071 0.929
41 H 0.067 0.933
42 H 0.064 0.936
43 H 0.070 0.930
44 H 0.072 0.928
45 H 0.093 0.907
46 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.109 -32.192 -0.668 35.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.683 4.683
8 H 0.091 0.909
9 S 0.165 5.835
10 C -0.304 4.304
11 C 0.317 3.683
12 O -0.393 6.393
13 N -0.394 5.394
14 C -0.002 4.002
15 C -0.166 4.166
16 C -0.068 4.068
17 N -0.320 5.320
18 C -0.062 4.062
19 C 0.034 3.966
20 H 0.085 0.915
21 C -0.189 4.189
22 C -0.160 4.160
23 C -0.196 4.196
24 C -0.014 4.014
25 O -0.299 6.299
26 H 0.077 0.923
27 H 0.108 0.892
28 H 0.108 0.892
29 H 0.232 0.768
30 H 0.082 0.918
31 H 0.084 0.916
32 H 0.097 0.903
33 H 0.086 0.914
34 H 0.052 0.948
35 H 0.094 0.906
36 H 0.168 0.832
37 H 0.103 0.897
38 H 0.056 0.944
39 H 0.093 0.907
40 H 0.090 0.910
41 H 0.086 0.914
42 H 0.083 0.917
43 H 0.089 0.911
44 H 0.091 0.909
45 H 0.111 0.889
46 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 11.957 -32.265 -0.124 34.410
hybrid contribution 2.202 0.940 -0.737 2.506
sum 14.159 -31.325 -0.862 34.387
Atomic orbital electron populations
1.70030 1.05958 1.27321 1.47007 1.24993 0.95020 0.99028 0.94555
0.86113 0.79591 0.81884 0.77882 1.19617 1.20578 1.20577 1.22919
0.94960 0.91659 1.58767 0.90865 1.85396 1.05042 0.96353 1.96708
1.23531 1.06510 0.95413 1.04935 1.20313 0.86532 0.86319 0.75159
1.90698 1.15407 1.85652 1.47583 1.45987 1.09956 1.05518 1.77891
1.21183 0.95939 0.80757 1.02331 1.21731 0.98066 0.93426 1.03390
1.21855 0.92634 0.91244 1.01107 1.60434 1.18732 1.02082 1.50753
1.21974 0.94979 0.87894 1.01345 1.22159 0.92411 0.93300 0.88740
0.91504 1.22183 0.98467 0.95129 1.03127 1.21570 0.96787 0.99496
0.98113 1.22204 1.00764 0.97533 0.99055 1.22537 0.87323 0.89491
1.02022 1.87885 1.37431 1.61121 1.43494 0.92254 0.89198 0.89233
0.76793 0.91801 0.91586 0.90332 0.91353 0.94790 0.90599 0.83151
0.89662 0.94407 0.90678 0.91025 0.91427 0.91733 0.91096 0.90913
0.88898 0.93141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16
4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
7 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16
8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16
9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16
10 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16
11 C 0.53 10.16 7.85 -10.98 -0.09 10.08 16
12 O -0.52 -12.10 15.86 5.56 0.09 -12.01 16
13 N -0.74 -10.11 5.56 -60.29 -0.33 -10.45 16
14 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16
15 C -0.13 -1.09 5.59 -26.73 -0.15 -1.24 16
16 C 0.06 0.50 5.69 -3.82 -0.02 0.47 16
17 N -0.69 -5.52 6.50 -113.78 -0.74 -6.26 16
18 C 0.07 0.47 5.42 -3.82 -0.02 0.45 16
19 C 0.09 0.61 2.92 -26.69 -0.08 0.53 16
20 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
21 C -0.15 -0.79 5.42 -26.59 -0.14 -0.94 16
22 C -0.12 -0.56 6.03 -26.55 -0.16 -0.72 16
23 C -0.16 -0.74 6.14 -26.60 -0.16 -0.90 16
24 C 0.06 0.36 6.84 37.21 0.25 0.61 16
25 O -0.38 -2.99 9.74 -35.23 -0.34 -3.33 16
26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
27 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16
28 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16
29 H 0.40 4.25 8.47 -40.82 -0.35 3.91 16
30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16
35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.35 2.89 8.12 -39.29 -0.32 2.57 16
37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16
40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
41 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16
42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
43 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16
44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16
45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
LS Contribution 388.44 15.07 5.85 5.85
Total: -1.00 -34.67 388.44 -10.39 -45.06
By element:
Atomic # 1 Polarization: 8.64 SS G_CDS: -8.24 Total: 0.39 kcal
Atomic # 6 Polarization: -6.08 SS G_CDS: -0.17 Total: -6.25 kcal
Atomic # 7 Polarization: -42.01 SS G_CDS: -0.34 Total: -42.35 kcal
Atomic # 8 Polarization: -15.08 SS G_CDS: -0.26 Total: -15.34 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.67 -10.39 -45.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001154815050.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.574 kcal
(2) G-P(sol) polarization free energy of solvation -34.672 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds