Wall clock time and date at job start Tue Mar 31 2020 11:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00275 * 2 1 4 4 H 1.48492 * 109.47389 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47204 * 300.00516 * 3 2 1 6 6 H 1.48504 * 109.46924 * 60.00057 * 3 2 1 7 7 C 1.38804 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99655 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.52993 * 109.47039 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.48468 * 60.02077 * 19 18 17 21 21 C 1.53090 * 109.48166 * 180.02562 * 19 18 17 22 22 C 1.53176 * 109.16375 * 177.58890 * 21 19 18 23 23 C 1.53170 * 109.04144 * 303.01880 * 22 21 19 24 24 C 1.53093 * 109.16186 * 56.97718 * 23 22 21 25 25 O 1.42904 * 109.41871 * 302.39690 * 24 23 22 26 26 H 0.97002 * 120.00199 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47463 * 59.99871 * 10 9 7 28 28 H 1.09005 * 109.47601 * 300.00003 * 10 9 7 29 29 H 0.97006 * 119.99601 * 359.97438 * 13 11 10 30 30 H 1.08993 * 109.46962 * 59.99400 * 14 13 11 31 31 H 1.09005 * 109.46850 * 300.00153 * 14 13 11 32 32 H 1.08995 * 109.47485 * 60.00430 * 15 14 13 33 33 H 1.08996 * 109.47010 * 299.99222 * 15 14 13 34 34 H 1.09004 * 109.46889 * 60.00145 * 16 15 14 35 35 H 1.08995 * 109.47384 * 299.99786 * 16 15 14 36 36 H 1.00901 * 111.00067 * 303.95263 * 17 16 15 37 37 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 38 38 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 39 39 H 1.08995 * 109.52505 * 297.49550 * 21 19 18 40 40 H 1.09005 * 109.52279 * 57.68528 * 21 19 18 41 41 H 1.09010 * 109.54477 * 183.15395 * 22 21 19 42 42 H 1.09000 * 109.61496 * 62.93470 * 22 21 19 43 43 H 1.09010 * 109.52152 * 297.07884 * 23 22 21 44 44 H 1.08998 * 109.58144 * 176.91676 * 23 22 21 45 45 H 1.08997 * 109.48287 * 182.40808 * 24 23 22 46 46 H 1.09003 * 109.48662 * 62.38302 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7152 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 6 2.9657 -10.1314 -0.0003 17 7 4.0910 -11.0757 -0.0011 18 6 3.6127 -12.4647 -0.0012 19 6 4.8105 -13.4165 -0.0013 20 1 5.4146 -13.2408 0.8888 21 6 4.3124 -14.8641 -0.0020 22 6 5.5157 -15.8099 -0.0630 23 6 6.3474 -15.4809 -1.3064 24 6 6.7670 -14.0094 -1.2554 25 8 5.6022 -13.1860 -1.1684 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 -0.0004 30 1 1.7219 -7.8753 -0.8909 31 1 1.7213 -7.8751 0.8890 32 1 4.1109 -8.5386 0.8890 33 1 4.1107 -8.5385 -0.8910 34 1 2.3568 -10.2917 -0.8901 35 1 2.3574 -10.2913 0.8899 36 1 4.7056 -10.9052 -0.7830 37 1 3.0090 -12.6411 0.8891 38 1 3.0082 -12.6407 -0.8909 39 1 3.7451 -15.0546 0.9090 40 1 3.6747 -15.0295 -0.8705 41 1 5.1665 -16.8410 -0.1203 42 1 6.1278 -15.6814 0.8297 43 1 5.7508 -15.6587 -2.2013 44 1 7.2356 -16.1123 -1.3294 45 1 7.3230 -13.7584 -2.1586 46 1 7.3971 -13.8411 -0.3820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154815050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:04 Heat of formation + Delta-G solvation = -108.637904 kcal Electronic energy + Delta-G solvation = -22771.872266 eV Core-core repulsion = 19207.571172 eV Total energy + Delta-G solvation = -3564.301094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94602 -39.13642 -37.01811 -34.90653 -34.11019 -32.66896 -32.40843 -30.86955 -28.99505 -26.88423 -25.48785 -24.79890 -23.69933 -22.25136 -21.63855 -20.72288 -20.21181 -17.80173 -17.04522 -16.62004 -16.27121 -16.14166 -16.00138 -15.52776 -15.16765 -14.91437 -14.78754 -14.65176 -14.33909 -13.88845 -13.73099 -13.41239 -13.16942 -13.06652 -12.72457 -12.57025 -12.29863 -11.98318 -11.85556 -11.70865 -11.63099 -11.58340 -11.15171 -11.07267 -11.03985 -10.99784 -10.75978 -10.71807 -9.89236 -9.78418 -9.36468 -9.05883 -8.84874 -8.76919 -8.20560 -6.47631 -6.19890 -3.90115 3.05553 3.14509 3.23070 3.29273 3.30021 3.34293 3.62050 3.87330 4.22330 4.25725 4.33213 4.35714 4.54907 4.67611 4.70803 4.80019 4.88602 4.91564 4.96590 5.08520 5.15377 5.17922 5.22401 5.26182 5.27361 5.34324 5.40088 5.41384 5.47306 5.51298 5.58598 5.61004 5.70022 5.77834 5.90418 5.98317 6.04010 6.17441 6.59133 6.69050 6.79623 7.06565 7.61905 7.76118 8.37475 8.66027 9.25588 10.87658 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.045875 B = 0.001479 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.202767 B =18925.351000 C =19385.100302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.739 5.739 14 C 0.123 3.877 15 C -0.128 4.128 16 C 0.061 3.939 17 N -0.688 5.688 18 C 0.068 3.932 19 C 0.092 3.908 20 H 0.067 0.933 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.063 3.937 25 O -0.380 6.380 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.350 0.650 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.109 -32.192 -0.668 35.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.166 4.166 16 C -0.068 4.068 17 N -0.320 5.320 18 C -0.062 4.062 19 C 0.034 3.966 20 H 0.085 0.915 21 C -0.189 4.189 22 C -0.160 4.160 23 C -0.196 4.196 24 C -0.014 4.014 25 O -0.299 6.299 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.957 -32.265 -0.124 34.410 hybrid contribution 2.202 0.940 -0.737 2.506 sum 14.159 -31.325 -0.862 34.387 Atomic orbital electron populations 1.70030 1.05958 1.27321 1.47007 1.24993 0.95020 0.99028 0.94555 0.86113 0.79591 0.81884 0.77882 1.19617 1.20578 1.20577 1.22919 0.94960 0.91659 1.58767 0.90865 1.85396 1.05042 0.96353 1.96708 1.23531 1.06510 0.95413 1.04935 1.20313 0.86532 0.86319 0.75159 1.90698 1.15407 1.85652 1.47583 1.45987 1.09956 1.05518 1.77891 1.21183 0.95939 0.80757 1.02331 1.21731 0.98066 0.93426 1.03390 1.21855 0.92634 0.91244 1.01107 1.60434 1.18732 1.02082 1.50753 1.21974 0.94979 0.87894 1.01345 1.22159 0.92411 0.93300 0.88740 0.91504 1.22183 0.98467 0.95129 1.03127 1.21570 0.96787 0.99496 0.98113 1.22204 1.00764 0.97533 0.99055 1.22537 0.87323 0.89491 1.02022 1.87885 1.37431 1.61121 1.43494 0.92254 0.89198 0.89233 0.76793 0.91801 0.91586 0.90332 0.91353 0.94790 0.90599 0.83151 0.89662 0.94407 0.90678 0.91025 0.91427 0.91733 0.91096 0.90913 0.88898 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.16 7.85 -10.98 -0.09 10.08 16 12 O -0.52 -12.10 15.86 5.56 0.09 -12.01 16 13 N -0.74 -10.11 5.56 -60.29 -0.33 -10.45 16 14 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16 15 C -0.13 -1.09 5.59 -26.73 -0.15 -1.24 16 16 C 0.06 0.50 5.69 -3.82 -0.02 0.47 16 17 N -0.69 -5.52 6.50 -113.78 -0.74 -6.26 16 18 C 0.07 0.47 5.42 -3.82 -0.02 0.45 16 19 C 0.09 0.61 2.92 -26.69 -0.08 0.53 16 20 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 21 C -0.15 -0.79 5.42 -26.59 -0.14 -0.94 16 22 C -0.12 -0.56 6.03 -26.55 -0.16 -0.72 16 23 C -0.16 -0.74 6.14 -26.60 -0.16 -0.90 16 24 C 0.06 0.36 6.84 37.21 0.25 0.61 16 25 O -0.38 -2.99 9.74 -35.23 -0.34 -3.33 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 29 H 0.40 4.25 8.47 -40.82 -0.35 3.91 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.35 2.89 8.12 -39.29 -0.32 2.57 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -34.67 388.44 -10.39 -45.06 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.24 Total: 0.39 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.17 Total: -6.25 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.34 Total: -42.35 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.26 Total: -15.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.67 -10.39 -45.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.574 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds