Wall clock time and date at job start Tue Mar 31 2020 11:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00275 * 2 1 4 4 H 1.48492 * 109.47389 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47204 * 300.00516 * 3 2 1 6 6 H 1.48504 * 109.46924 * 60.00057 * 3 2 1 7 7 C 1.38804 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99655 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.52993 * 109.47039 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.48468 * 60.02077 * 19 18 17 21 21 C 1.53090 * 109.48166 * 180.02562 * 19 18 17 22 22 C 1.53176 * 109.16375 * 177.58890 * 21 19 18 23 23 C 1.53170 * 109.04144 * 303.01880 * 22 21 19 24 24 C 1.53093 * 109.16186 * 56.97718 * 23 22 21 25 25 O 1.42904 * 109.41871 * 302.39690 * 24 23 22 26 26 H 0.97002 * 120.00199 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47463 * 59.99871 * 10 9 7 28 28 H 1.09005 * 109.47601 * 300.00003 * 10 9 7 29 29 H 0.97006 * 119.99601 * 359.97438 * 13 11 10 30 30 H 1.08993 * 109.46962 * 59.99400 * 14 13 11 31 31 H 1.09005 * 109.46850 * 300.00153 * 14 13 11 32 32 H 1.08995 * 109.47485 * 60.00430 * 15 14 13 33 33 H 1.08996 * 109.47010 * 299.99222 * 15 14 13 34 34 H 1.09004 * 109.46889 * 60.00145 * 16 15 14 35 35 H 1.08995 * 109.47384 * 299.99786 * 16 15 14 36 36 H 1.00901 * 111.00067 * 303.95263 * 17 16 15 37 37 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 38 38 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 39 39 H 1.08995 * 109.52505 * 297.49550 * 21 19 18 40 40 H 1.09005 * 109.52279 * 57.68528 * 21 19 18 41 41 H 1.09010 * 109.54477 * 183.15395 * 22 21 19 42 42 H 1.09000 * 109.61496 * 62.93470 * 22 21 19 43 43 H 1.09010 * 109.52152 * 297.07884 * 23 22 21 44 44 H 1.08998 * 109.58144 * 176.91676 * 23 22 21 45 45 H 1.08997 * 109.48287 * 182.40808 * 24 23 22 46 46 H 1.09003 * 109.48662 * 62.38302 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7152 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 6 2.9657 -10.1314 -0.0003 17 7 4.0910 -11.0757 -0.0011 18 6 3.6127 -12.4647 -0.0012 19 6 4.8105 -13.4165 -0.0013 20 1 5.4146 -13.2408 0.8888 21 6 4.3124 -14.8641 -0.0020 22 6 5.5157 -15.8099 -0.0630 23 6 6.3474 -15.4809 -1.3064 24 6 6.7670 -14.0094 -1.2554 25 8 5.6022 -13.1860 -1.1684 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 -0.0004 30 1 1.7219 -7.8753 -0.8909 31 1 1.7213 -7.8751 0.8890 32 1 4.1109 -8.5386 0.8890 33 1 4.1107 -8.5385 -0.8910 34 1 2.3568 -10.2917 -0.8901 35 1 2.3574 -10.2913 0.8899 36 1 4.7056 -10.9052 -0.7830 37 1 3.0090 -12.6411 0.8891 38 1 3.0082 -12.6407 -0.8909 39 1 3.7451 -15.0546 0.9090 40 1 3.6747 -15.0295 -0.8705 41 1 5.1665 -16.8410 -0.1203 42 1 6.1278 -15.6814 0.8297 43 1 5.7508 -15.6587 -2.2013 44 1 7.2356 -16.1123 -1.3294 45 1 7.3230 -13.7584 -2.1586 46 1 7.3971 -13.8411 -0.3820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154815050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:01 Heat of formation + Delta-G solvation = -134.079773 kcal Electronic energy + Delta-G solvation = -22772.975508 eV Core-core repulsion = 19207.571172 eV Total energy + Delta-G solvation = -3565.404336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.61516 -40.40328 -37.77079 -35.98779 -34.58135 -34.54434 -33.46647 -31.81329 -30.27272 -27.76164 -27.43901 -25.43536 -24.35653 -22.82607 -22.40254 -21.65910 -21.11824 -19.81139 -17.80305 -17.58686 -17.27208 -17.04083 -16.95855 -16.87586 -16.46275 -15.94427 -15.80596 -15.53866 -15.24750 -15.06451 -14.65819 -14.51523 -14.28669 -13.92156 -13.74930 -13.56968 -13.17926 -13.15541 -12.90764 -12.90294 -12.68419 -12.51764 -12.40323 -12.19974 -12.00713 -11.81727 -11.70584 -11.56196 -11.20614 -11.15374 -10.95126 -10.35543 -10.26904 -10.11345 -9.40693 -8.66526 -8.34374 -6.12550 1.27788 1.42116 1.47876 1.59217 1.61592 2.25918 2.29876 2.83535 2.99967 3.11738 3.33387 3.82957 3.92568 3.94771 3.97101 4.00722 4.06314 4.16817 4.25229 4.26315 4.30749 4.31967 4.49032 4.51975 4.56798 4.65038 4.69674 4.72864 4.78243 4.80441 4.87344 4.96016 5.06086 5.13173 5.17073 5.20588 5.21062 5.38516 5.42717 5.45956 6.00559 6.20631 6.32200 6.43269 6.52472 7.07073 7.25326 8.75240 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.045875 B = 0.001479 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.202767 B =18925.351000 C =19385.100302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.712 5.712 14 C 0.122 3.878 15 C -0.112 4.112 16 C 0.064 3.936 17 N -0.691 5.691 18 C 0.067 3.933 19 C 0.094 3.906 20 H 0.063 0.937 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.156 4.156 24 C 0.057 3.943 25 O -0.400 6.400 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.417 0.583 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.348 0.652 37 H 0.093 0.907 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.697 -32.887 -0.503 36.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.367 5.367 14 C -0.002 4.002 15 C -0.150 4.150 16 C -0.066 4.066 17 N -0.322 5.322 18 C -0.062 4.062 19 C 0.036 3.964 20 H 0.081 0.919 21 C -0.187 4.187 22 C -0.160 4.160 23 C -0.193 4.193 24 C -0.019 4.019 25 O -0.320 6.320 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.167 0.833 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.605 -33.006 0.042 36.093 hybrid contribution 1.449 1.011 -0.794 1.937 sum 16.054 -31.995 -0.751 35.805 Atomic orbital electron populations 1.70192 1.08007 1.28555 1.48081 1.26135 0.95960 1.03335 0.93706 0.84889 0.78610 0.76267 0.78071 1.18002 1.19928 1.19925 1.23250 0.95381 0.91968 1.58797 0.89856 1.85584 1.10702 0.99332 1.97055 1.23376 1.03509 0.94293 1.06884 1.20101 0.86243 0.86789 0.75137 1.90688 1.17503 1.86173 1.50316 1.45747 1.10367 1.05166 1.75377 1.21306 0.97236 0.80027 1.01618 1.21585 0.96618 0.92584 1.04204 1.21799 0.92689 0.91010 1.01081 1.60446 1.18591 1.02518 1.50666 1.22021 0.95265 0.87485 1.01432 1.22151 0.92067 0.93950 0.88264 0.91912 1.22166 0.98775 0.94427 1.03320 1.21594 0.96530 0.99706 0.98201 1.22187 1.01235 0.97104 0.98793 1.22683 0.86833 0.89877 1.02531 1.87853 1.38212 1.61937 1.43961 0.91990 0.87108 0.87142 0.74573 0.92626 0.92347 0.89697 0.90268 0.95010 0.90557 0.83306 0.88903 0.94958 0.89716 0.91653 0.90654 0.91368 0.91793 0.89576 0.88270 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.43 9.50 67.96 0.65 -30.78 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 10 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 11 C 0.53 19.96 7.85 87.66 0.69 20.65 16 12 O -0.57 -26.93 15.86 -3.03 -0.05 -26.98 16 13 N -0.71 -18.11 5.56 -463.06 -2.57 -20.68 16 14 C 0.12 2.71 5.67 86.38 0.49 3.20 16 15 C -0.11 -1.66 5.59 30.59 0.17 -1.49 16 16 C 0.06 0.94 5.69 86.30 0.49 1.43 16 17 N -0.69 -10.10 6.50 -513.88 -3.34 -13.44 16 18 C 0.07 0.88 5.42 86.30 0.47 1.34 16 19 C 0.09 1.15 2.92 30.62 0.09 1.24 16 20 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 21 C -0.15 -1.40 5.42 30.68 0.17 -1.23 16 22 C -0.12 -0.96 6.03 30.71 0.19 -0.77 16 23 C -0.16 -1.26 6.14 30.68 0.19 -1.07 16 24 C 0.06 0.59 6.84 72.01 0.49 1.08 16 25 O -0.40 -5.95 9.74 -148.98 -1.45 -7.40 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 28 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 29 H 0.42 7.60 8.47 -92.70 -0.79 6.81 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.35 5.27 8.12 -89.69 -0.73 4.54 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -76.54 388.44 -1.84 -78.38 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.56 Total: 20.13 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.98 Total: -9.91 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -5.63 Total: -90.24 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.50 Total: -34.38 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -76.54 -1.84 -78.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.702 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds