Wall clock time and date at job start Tue Mar 31 2020 11:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00217 * 2 1 4 4 H 1.48502 * 109.47032 * 269.99754 * 3 2 1 5 5 H 1.48500 * 109.46875 * 29.99800 * 3 2 1 6 6 H 1.48497 * 109.47401 * 149.99903 * 3 2 1 7 7 C 1.38815 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00075 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99579 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99643 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.94999 * 23.59056 * 10 9 7 12 12 C 1.53949 * 113.66374 * 252.18500 * 10 9 7 13 13 C 1.53951 * 87.29913 * 220.79845 * 12 10 9 14 14 H 1.09001 * 113.65718 * 270.26260 * 13 12 10 15 15 N 1.46494 * 113.66426 * 139.20763 * 13 12 10 16 16 C 1.34774 * 120.00545 * 107.81548 * 15 13 12 17 17 O 1.21778 * 119.99472 * 359.97438 * 16 15 13 18 18 C 1.41547 * 120.00303 * 180.02562 * 16 15 13 19 19 C 1.35619 * 120.00049 * 186.33706 * 18 16 15 20 20 C 1.41614 * 120.00009 * 8.85665 * 19 18 16 21 21 C 1.37953 * 126.09999 * 219.80086 * 20 19 18 22 22 C 1.40320 * 106.52396 * 179.85065 * 21 20 19 23 23 C 1.35149 * 107.20368 * 0.40545 * 22 21 20 24 24 O 1.34014 * 109.03963 * 359.74659 * 23 22 21 25 25 C 1.52906 * 113.66151 * 155.00039 * 10 9 7 26 26 C 1.52909 * 121.13737 * 265.08698 * 25 10 9 27 27 C 1.53943 * 86.78288 * 100.82227 * 26 25 10 28 28 C 1.53067 * 121.06974 * 13.62917 * 25 10 9 29 29 H 0.96997 * 120.00139 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00208 * 359.97438 * 9 7 2 31 31 H 1.09003 * 113.58066 * 335.40151 * 12 10 9 32 32 H 1.09003 * 113.58377 * 106.19087 * 12 10 9 33 33 H 0.97009 * 119.99520 * 287.80741 * 15 13 12 34 34 H 1.08004 * 120.00137 * 6.33326 * 18 16 15 35 35 H 1.08003 * 120.00251 * 188.84997 * 19 18 16 36 36 H 1.08001 * 126.73706 * 359.97438 * 21 20 19 37 37 H 1.07999 * 126.39262 * 180.15697 * 22 21 20 38 38 H 1.08005 * 125.48007 * 179.72181 * 23 22 21 39 39 H 1.09003 * 113.66437 * 346.34930 * 26 25 10 40 40 H 1.09003 * 113.66277 * 215.29461 * 26 25 10 41 41 H 1.09003 * 113.58346 * 139.33516 * 27 26 25 42 42 H 1.09002 * 113.58164 * 270.05047 * 27 26 25 43 43 H 1.09004 * 113.66488 * 144.67798 * 28 25 10 44 44 H 1.08998 * 113.71113 * 13.57834 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0022 11 1 3.5281 -3.2992 -0.3992 12 6 4.7941 -2.7895 1.3451 13 6 6.0000 -3.2916 0.5304 14 1 5.9466 -4.3505 0.2775 15 7 7.2944 -2.9040 1.0964 16 6 8.0740 -3.8287 1.6911 17 8 7.7022 -4.9863 1.7582 18 6 9.3245 -3.4540 2.2384 19 6 10.1650 -4.4026 2.7211 20 6 9.8808 -5.7739 2.5105 21 6 10.0602 -6.7909 3.4251 22 6 9.6472 -7.9736 2.7929 23 6 9.2503 -7.6419 1.5443 24 8 9.3917 -6.3197 1.3774 25 6 5.5184 -2.3682 -0.5892 26 6 5.7848 -2.7006 -2.0577 27 6 5.7873 -1.1822 -2.3111 28 6 6.1758 -1.0073 -0.8317 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 5.0107 -1.9053 1.9447 32 1 4.2941 -3.5743 1.9128 33 1 7.5904 -1.9817 1.0431 34 1 9.6092 -2.4127 2.2716 35 1 11.0511 -4.1123 3.2659 36 1 10.4415 -6.6953 4.4310 37 1 9.6502 -8.9645 3.2224 38 1 8.8791 -8.3315 0.8005 39 1 4.9616 -3.2240 -2.5442 40 1 6.7510 -3.1746 -2.2307 41 1 6.5613 -0.8574 -3.0065 42 1 4.8042 -0.7791 -2.5543 43 1 7.2522 -1.0045 -0.6595 44 1 5.6646 -0.1797 -0.3400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202353812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:04 Heat of formation + Delta-G solvation = 69.889558 kcal Electronic energy + Delta-G solvation = -26431.454589 eV Core-core repulsion = 22739.451075 eV Total energy + Delta-G solvation = -3692.003514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.45391 -40.70808 -39.17751 -35.05530 -34.36331 -34.00904 -32.88253 -32.46792 -30.51404 -28.85340 -25.64763 -25.35465 -24.23952 -23.72080 -21.84947 -21.69595 -20.83151 -20.55482 -19.59946 -18.42464 -18.06836 -16.98828 -16.68676 -16.16019 -15.92968 -15.22029 -14.94912 -14.86183 -14.64751 -14.12927 -14.06393 -13.51756 -13.04163 -12.90448 -12.72511 -12.63500 -12.59522 -12.39397 -12.19249 -11.99686 -11.79643 -11.53281 -11.05172 -10.90147 -10.81836 -10.32195 -10.25661 -10.09181 -9.97482 -9.89285 -9.84289 -9.67882 -9.52366 -8.90701 -8.66317 -8.06470 -7.29066 -5.80903 -3.16340 0.43109 2.05064 2.60337 3.11603 3.32150 3.34338 3.39592 3.41260 3.42841 4.54215 4.57915 4.68293 4.75948 4.81095 4.91809 4.94048 4.97838 5.09729 5.13663 5.17058 5.37046 5.50192 5.53231 5.60963 5.67099 5.80601 5.83978 5.84671 5.86532 5.89245 5.95291 6.11217 6.16940 6.18670 6.26793 6.29872 6.44221 6.52784 6.57196 6.70028 6.79541 6.96709 7.13809 7.65107 7.96335 8.34208 8.39047 9.16472 9.88653 10.08616 11.37447 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002995 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.133454 B = 9346.633990 C = 9489.602852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.731 5.731 10 C 0.199 3.801 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.135 3.865 14 H 0.112 0.888 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.529 6.529 18 C -0.201 4.201 19 C -0.001 4.001 20 C 0.010 3.990 21 C -0.184 4.184 22 C -0.227 4.227 23 C -0.016 4.016 24 O -0.132 6.132 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.197 0.803 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.136 -9.236 2.618 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.371 5.371 10 C 0.087 3.913 11 H 0.108 0.892 12 C -0.216 4.216 13 C 0.030 3.970 14 H 0.130 0.870 15 N -0.358 5.358 16 C 0.324 3.676 17 O -0.408 6.408 18 C -0.222 4.222 19 C -0.021 4.021 20 C -0.040 4.040 21 C -0.203 4.203 22 C -0.246 4.246 23 C -0.087 4.087 24 O -0.025 6.025 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.171 4.171 28 C -0.157 4.157 29 H 0.070 0.930 30 H 0.198 0.802 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.214 0.786 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.484 -9.905 2.377 25.598 hybrid contribution 0.646 1.650 0.326 1.802 sum 24.130 -8.255 2.703 25.645 Atomic orbital electron populations 1.69693 1.05095 1.25841 1.57309 1.24669 0.95204 0.97112 1.01966 0.86615 0.79217 0.85240 0.77836 1.20949 1.21673 1.20427 1.19142 0.80577 0.94813 1.43093 0.89034 1.42688 1.03936 1.01854 1.88608 1.21042 0.87926 0.90273 0.92062 0.89223 1.24238 0.96412 1.00935 1.00004 1.22208 0.81081 0.99344 0.94416 0.87045 1.45909 1.20088 1.11649 1.58112 1.17136 0.85475 0.85846 0.79104 1.90862 1.74344 1.18256 1.57344 1.22347 0.95307 1.00773 1.03800 1.20602 0.98033 0.88069 0.95425 1.19554 1.03409 0.93831 0.87244 1.22131 1.06203 0.91678 1.00330 1.21612 1.07962 0.99706 0.95364 1.24142 1.02873 0.82577 0.99087 1.84274 1.61893 1.20616 1.35726 1.23665 0.99331 0.95918 0.93680 1.22677 1.01221 0.96543 0.95673 1.22757 1.02040 0.96618 0.95655 1.22489 0.99126 0.96627 0.97445 0.93008 0.80248 0.90386 0.91761 0.76787 0.84647 0.82895 0.83543 0.83699 0.78592 0.91165 0.90809 0.92245 0.89358 0.90710 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 21.67 27.74 -169.99 -4.71 16.95 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.25 -6.79 10.45 -15.06 -0.16 -6.95 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.73 -16.60 5.13 -52.99 -0.27 -16.87 16 10 C 0.20 3.73 4.36 -67.48 -0.29 3.43 16 11 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 12 C -0.17 -2.98 7.68 -25.75 -0.20 -3.18 16 13 C 0.13 2.00 4.12 -67.48 -0.28 1.72 16 14 H 0.11 1.79 7.46 -51.93 -0.39 1.40 16 15 N -0.71 -8.99 5.24 -56.28 -0.29 -9.29 16 16 C 0.53 7.26 7.36 -15.00 -0.11 7.15 16 17 O -0.53 -8.97 12.01 -19.71 -0.24 -9.20 16 18 C -0.20 -1.99 9.85 -39.26 -0.39 -2.38 16 19 C 0.00 -0.01 9.95 -39.23 -0.39 -0.40 16 20 C 0.01 0.12 5.32 -38.40 -0.20 -0.08 16 21 C -0.18 -2.00 10.90 -38.90 -0.42 -2.42 16 22 C -0.23 -2.40 10.87 -39.90 -0.43 -2.83 16 23 C -0.02 -0.18 12.06 29.63 0.36 0.17 16 24 O -0.13 -1.81 7.81 -20.13 -0.16 -1.97 16 25 C -0.12 -1.85 1.07 -154.63 -0.16 -2.02 16 26 C -0.12 -1.71 7.84 -26.29 -0.21 -1.92 16 27 C -0.13 -1.88 8.08 -25.75 -0.21 -2.08 16 28 C -0.12 -1.65 6.79 -26.20 -0.18 -1.83 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 30 H 0.36 8.08 3.77 -40.82 -0.15 7.93 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.40 4.19 7.00 -40.82 -0.29 3.90 16 34 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.07 0.84 7.03 -51.93 -0.37 0.48 16 44 H 0.07 1.09 6.41 -51.93 -0.33 0.76 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -34.06 360.12 -9.03 -43.10 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.19 Total: 13.60 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.37 Total: -13.53 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.21 Total: -54.38 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.39 Total: -11.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.06 -9.03 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202353812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.986 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds