Wall clock time and date at job start Tue Mar 31 2020 11:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00217 * 2 1 4 4 H 1.48502 * 109.47032 * 269.99754 * 3 2 1 5 5 H 1.48500 * 109.46875 * 29.99800 * 3 2 1 6 6 H 1.48497 * 109.47401 * 149.99903 * 3 2 1 7 7 C 1.38815 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00075 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99579 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99643 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.94999 * 23.59056 * 10 9 7 12 12 C 1.53949 * 113.66374 * 252.18500 * 10 9 7 13 13 C 1.53951 * 87.29913 * 220.79845 * 12 10 9 14 14 H 1.09001 * 113.65718 * 270.26260 * 13 12 10 15 15 N 1.46494 * 113.66426 * 139.20763 * 13 12 10 16 16 C 1.34774 * 120.00545 * 107.81548 * 15 13 12 17 17 O 1.21778 * 119.99472 * 359.97438 * 16 15 13 18 18 C 1.41547 * 120.00303 * 180.02562 * 16 15 13 19 19 C 1.35619 * 120.00049 * 186.33706 * 18 16 15 20 20 C 1.41614 * 120.00009 * 8.85665 * 19 18 16 21 21 C 1.37953 * 126.09999 * 219.80086 * 20 19 18 22 22 C 1.40320 * 106.52396 * 179.85065 * 21 20 19 23 23 C 1.35149 * 107.20368 * 0.40545 * 22 21 20 24 24 O 1.34014 * 109.03963 * 359.74659 * 23 22 21 25 25 C 1.52906 * 113.66151 * 155.00039 * 10 9 7 26 26 C 1.52909 * 121.13737 * 265.08698 * 25 10 9 27 27 C 1.53943 * 86.78288 * 100.82227 * 26 25 10 28 28 C 1.53067 * 121.06974 * 13.62917 * 25 10 9 29 29 H 0.96997 * 120.00139 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00208 * 359.97438 * 9 7 2 31 31 H 1.09003 * 113.58066 * 335.40151 * 12 10 9 32 32 H 1.09003 * 113.58377 * 106.19087 * 12 10 9 33 33 H 0.97009 * 119.99520 * 287.80741 * 15 13 12 34 34 H 1.08004 * 120.00137 * 6.33326 * 18 16 15 35 35 H 1.08003 * 120.00251 * 188.84997 * 19 18 16 36 36 H 1.08001 * 126.73706 * 359.97438 * 21 20 19 37 37 H 1.07999 * 126.39262 * 180.15697 * 22 21 20 38 38 H 1.08005 * 125.48007 * 179.72181 * 23 22 21 39 39 H 1.09003 * 113.66437 * 346.34930 * 26 25 10 40 40 H 1.09003 * 113.66277 * 215.29461 * 26 25 10 41 41 H 1.09003 * 113.58346 * 139.33516 * 27 26 25 42 42 H 1.09002 * 113.58164 * 270.05047 * 27 26 25 43 43 H 1.09004 * 113.66488 * 144.67798 * 28 25 10 44 44 H 1.08998 * 113.71113 * 13.57834 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0022 11 1 3.5281 -3.2992 -0.3992 12 6 4.7941 -2.7895 1.3451 13 6 6.0000 -3.2916 0.5304 14 1 5.9466 -4.3505 0.2775 15 7 7.2944 -2.9040 1.0964 16 6 8.0740 -3.8287 1.6911 17 8 7.7022 -4.9863 1.7582 18 6 9.3245 -3.4540 2.2384 19 6 10.1650 -4.4026 2.7211 20 6 9.8808 -5.7739 2.5105 21 6 10.0602 -6.7909 3.4251 22 6 9.6472 -7.9736 2.7929 23 6 9.2503 -7.6419 1.5443 24 8 9.3917 -6.3197 1.3774 25 6 5.5184 -2.3682 -0.5892 26 6 5.7848 -2.7006 -2.0577 27 6 5.7873 -1.1822 -2.3111 28 6 6.1758 -1.0073 -0.8317 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 5.0107 -1.9053 1.9447 32 1 4.2941 -3.5743 1.9128 33 1 7.5904 -1.9817 1.0431 34 1 9.6092 -2.4127 2.2716 35 1 11.0511 -4.1123 3.2659 36 1 10.4415 -6.6953 4.4310 37 1 9.6502 -8.9645 3.2224 38 1 8.8791 -8.3315 0.8005 39 1 4.9616 -3.2240 -2.5442 40 1 6.7510 -3.1746 -2.2307 41 1 6.5613 -0.8574 -3.0065 42 1 4.8042 -0.7791 -2.5543 43 1 7.2522 -1.0045 -0.6595 44 1 5.6646 -0.1797 -0.3400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202353812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:01 Heat of formation + Delta-G solvation = 48.607002 kcal Electronic energy + Delta-G solvation = -26432.377469 eV Core-core repulsion = 22739.451075 eV Total energy + Delta-G solvation = -3692.926395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.27015 -41.95334 -40.24851 -36.38541 -35.85125 -34.92457 -34.06347 -33.68951 -32.39552 -29.69707 -26.86065 -26.69052 -25.59386 -25.02305 -23.20478 -22.51892 -21.93617 -21.80473 -20.50574 -20.20901 -19.05688 -18.41690 -17.71425 -17.20489 -16.86695 -16.59517 -16.40825 -16.02609 -15.81597 -15.51896 -14.95426 -14.79690 -14.57519 -14.13096 -13.83673 -13.74929 -13.67011 -13.49588 -13.37718 -13.19348 -13.11573 -12.97294 -12.78982 -12.37991 -12.17905 -12.06393 -11.87606 -11.36467 -11.26331 -11.08639 -11.02073 -10.86423 -10.77337 -10.63680 -9.82351 -9.27403 -8.86153 -8.03398 -5.36401 -0.32560 1.23680 1.34554 1.39363 1.46162 1.80386 2.29965 2.41486 2.46864 2.56057 3.25951 3.43921 3.51131 3.71945 3.78727 3.88364 3.91777 3.98722 4.07409 4.17375 4.19269 4.25365 4.51412 4.54820 4.59134 4.69980 4.75150 4.82825 4.86779 4.90889 4.97305 5.05679 5.08211 5.10618 5.13385 5.18232 5.31945 5.41083 5.46087 5.58068 5.67280 5.72120 5.77606 6.21530 6.33386 6.68799 7.06689 7.37103 7.82326 8.03558 9.18493 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002995 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.133454 B = 9346.633990 C = 9489.602852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.250 1.250 7 C -0.233 4.233 8 H 0.054 0.946 9 N -0.731 5.731 10 C 0.179 3.821 11 H 0.071 0.929 12 C -0.170 4.170 13 C 0.155 3.845 14 H 0.098 0.902 15 N -0.699 5.699 16 C 0.528 3.472 17 O -0.570 6.570 18 C -0.213 4.213 19 C 0.008 3.992 20 C -0.017 4.017 21 C -0.193 4.193 22 C -0.236 4.236 23 C -0.037 4.037 24 O -0.159 6.159 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.133 4.133 28 C -0.112 4.112 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.411 0.589 34 H 0.175 0.825 35 H 0.197 0.803 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.218 0.782 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.112 0.888 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.373 -8.049 3.048 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.174 1.174 7 C -0.364 4.364 8 H 0.072 0.928 9 N -0.372 5.372 10 C 0.068 3.932 11 H 0.090 0.910 12 C -0.211 4.211 13 C 0.048 3.952 14 H 0.116 0.884 15 N -0.349 5.349 16 C 0.319 3.681 17 O -0.452 6.452 18 C -0.233 4.233 19 C -0.012 4.012 20 C -0.067 4.067 21 C -0.212 4.212 22 C -0.255 4.255 23 C -0.106 4.106 24 O -0.053 6.053 25 C -0.116 4.116 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.149 4.149 29 H 0.066 0.934 30 H 0.204 0.796 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.249 0.751 34 H 0.193 0.807 35 H 0.214 0.786 36 H 0.187 0.813 37 H 0.183 0.817 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.130 0.870 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 27.799 -8.733 2.810 29.274 hybrid contribution -0.696 1.056 0.217 1.283 sum 27.103 -7.677 3.027 28.331 Atomic orbital electron populations 1.69887 1.07236 1.26674 1.59748 1.25497 0.96071 1.01231 1.02670 0.85469 0.78738 0.79652 0.78316 1.20058 1.22389 1.17412 1.19086 0.82781 0.93389 1.41131 0.92800 1.42566 1.02134 1.03555 1.88974 1.21255 0.89553 0.88272 0.94084 0.91049 1.24112 0.97502 1.00574 0.98954 1.21736 0.81550 0.98486 0.93393 0.88423 1.45743 1.18916 1.12445 1.57843 1.17806 0.86625 0.85203 0.78435 1.90856 1.75415 1.20009 1.58885 1.22477 0.93698 1.02945 1.04204 1.21201 0.98996 0.86570 0.94407 1.20254 1.03697 0.95477 0.87234 1.22546 1.05877 0.91533 1.01246 1.21993 1.07464 1.00780 0.95255 1.24734 1.03220 0.82398 1.00284 1.84243 1.62562 1.21607 1.36868 1.23420 0.96063 0.97513 0.94605 1.22700 1.01926 0.96828 0.94161 1.22709 1.01471 0.96280 0.96613 1.22577 1.01012 0.94558 0.96765 0.93356 0.79557 0.90349 0.93194 0.75098 0.80720 0.78584 0.81280 0.81688 0.76533 0.92373 0.88561 0.89467 0.92200 0.86969 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.56 13.97 21.65 0.30 -63.26 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 44.87 27.74 68.60 1.90 46.77 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 7 C -0.23 -13.29 10.45 84.03 0.88 -12.41 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 9 N -0.73 -33.40 5.13 -321.56 -1.65 -35.05 16 10 C 0.18 6.79 4.36 45.28 0.20 6.99 16 11 H 0.07 2.93 8.10 -2.39 -0.02 2.92 16 12 C -0.17 -5.82 7.68 31.23 0.24 -5.58 16 13 C 0.15 4.42 4.12 45.28 0.19 4.61 16 14 H 0.10 3.13 7.46 -2.39 -0.02 3.11 16 15 N -0.70 -15.91 5.24 -450.17 -2.36 -18.26 16 16 C 0.53 13.22 7.36 85.06 0.63 13.84 16 17 O -0.57 -18.98 12.01 19.15 0.23 -18.75 16 18 C -0.21 -3.45 9.85 22.48 0.22 -3.22 16 19 C 0.01 0.12 9.95 22.50 0.22 0.34 16 20 C -0.02 -0.37 5.32 23.04 0.12 -0.25 16 21 C -0.19 -3.86 10.90 22.71 0.25 -3.61 16 22 C -0.24 -4.72 10.87 22.06 0.24 -4.48 16 23 C -0.04 -0.81 12.06 67.11 0.81 0.00 16 24 O -0.16 -4.26 7.81 17.66 0.14 -4.12 16 25 C -0.11 -3.25 1.07 -52.26 -0.06 -3.30 16 26 C -0.12 -3.06 7.84 30.88 0.24 -2.82 16 27 C -0.13 -3.39 8.08 31.23 0.25 -3.14 16 28 C -0.11 -2.71 6.79 30.94 0.21 -2.50 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.37 15.95 3.77 -92.71 -0.35 15.60 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 6.98 7.00 -92.70 -0.65 6.33 16 34 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.11 1.93 7.03 -2.38 -0.02 1.91 16 44 H 0.06 1.57 6.41 -2.39 -0.02 1.56 16 Total: -1.00 -78.25 360.12 3.64 -74.61 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.03 Total: 36.87 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 5.11 Total: -18.81 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.71 Total: -116.57 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.37 Total: -22.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -78.25 3.64 -74.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202353812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.216 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds