Wall clock time and date at job start Tue Mar 31 2020 11:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00351 * 2 1 4 4 H 1.48496 * 109.46820 * 239.99592 * 3 2 1 5 5 H 1.48501 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46931 * 119.99533 * 3 2 1 7 7 C 1.37882 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.46150 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.31484 * 181.36804 * 10 9 7 12 12 N 1.46925 * 108.77713 * 305.36542 * 11 10 9 13 13 S 1.65593 * 120.62995 * 233.58569 * 12 11 10 14 14 O 1.42104 * 104.27905 * 333.92748 * 13 12 11 15 15 O 1.42102 * 104.27718 * 206.06528 * 13 12 11 16 16 C 1.81399 * 104.45079 * 89.99678 * 13 12 11 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.53120 * 109.52405 * 294.87786 * 17 16 13 19 19 C 1.53041 * 109.27438 * 182.50072 * 18 17 16 20 20 N 1.46843 * 109.57563 * 59.08350 * 19 18 17 21 21 C 1.46853 * 111.19703 * 298.28921 * 20 19 18 22 22 C 1.53037 * 109.52493 * 61.74098 * 21 20 19 23 23 C 1.46933 * 118.73827 * 53.85318 * 12 11 10 24 24 C 1.53047 * 109.44474 * 300.05398 * 9 7 2 25 25 H 0.97005 * 119.99764 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46300 * 60.01738 * 9 7 2 27 27 H 1.08997 * 109.49457 * 61.41352 * 10 9 7 28 28 H 1.09005 * 109.49164 * 301.32211 * 10 9 7 29 29 H 1.08997 * 109.58777 * 185.57144 * 11 10 9 30 30 H 1.09008 * 109.70018 * 65.21783 * 11 10 9 31 31 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 32 32 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 33 33 H 1.09004 * 109.51672 * 54.99762 * 17 16 13 34 34 H 1.08996 * 109.49932 * 302.37967 * 18 17 16 35 35 H 1.08997 * 109.50281 * 62.49328 * 18 17 16 36 36 H 1.08997 * 109.40865 * 299.06801 * 19 18 17 37 37 H 1.08998 * 109.45139 * 179.12612 * 19 18 17 38 38 H 1.00903 * 111.00403 * 62.38372 * 20 19 18 39 39 H 1.09003 * 109.46211 * 301.72751 * 21 20 19 40 40 H 1.09003 * 109.45179 * 181.75238 * 21 20 19 41 41 H 1.08998 * 109.50318 * 180.87952 * 22 21 20 42 42 H 1.09007 * 109.53221 * 60.78277 * 22 21 20 43 43 H 1.09004 * 109.58121 * 65.93504 * 23 12 11 44 44 H 1.08998 * 109.58227 * 186.35433 * 23 12 11 45 45 H 1.08996 * 109.49965 * 298.57776 * 24 9 7 46 46 H 1.09004 * 109.49273 * 58.67254 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0005 11 6 1.4765 -4.9867 -0.0340 12 7 0.5224 -5.0088 1.0831 13 16 0.5092 -6.2695 2.1566 14 8 1.0339 -7.3643 1.4180 15 8 -0.8216 -6.2920 2.6543 16 6 1.6674 -5.7670 3.4591 17 6 1.7434 -6.8626 4.5245 18 6 0.3865 -6.9932 5.2220 19 6 0.4863 -8.0462 6.3280 20 7 1.5185 -7.6490 7.2939 21 6 2.8384 -7.5642 6.6558 22 6 2.8094 -6.4957 5.5606 23 6 -0.4239 -3.8938 1.2260 24 6 0.3698 -2.5788 1.2494 25 1 -0.4850 0.8401 -0.0004 26 1 0.6250 -2.5571 -0.8898 27 1 2.8557 -3.6192 0.9028 28 1 2.8880 -3.5915 -0.8773 29 1 2.1750 -5.8175 0.0655 30 1 0.9370 -5.0738 -0.9772 31 1 2.6557 -5.6115 3.0264 32 1 1.3207 -4.8400 3.9159 33 1 2.0038 -7.8107 4.0540 34 1 0.1078 -6.0339 5.6581 35 1 -0.3679 -7.2965 4.4962 36 1 0.7505 -9.0084 5.8892 37 1 -0.4741 -8.1304 6.8366 38 1 1.2774 -6.7782 7.7431 39 1 3.0915 -8.5287 6.2155 40 1 3.5863 -7.2984 7.4029 41 1 3.7847 -6.4439 5.0768 42 1 2.5702 -5.5280 6.0018 43 1 -1.1154 -3.8912 0.3834 44 1 -0.9797 -4.0035 2.1572 45 1 0.9972 -2.5457 2.1400 46 1 -0.3227 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239085572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:14 Heat of formation + Delta-G solvation = -91.320564 kcal Electronic energy + Delta-G solvation = -26032.493212 eV Core-core repulsion = 22468.943054 eV Total energy + Delta-G solvation = -3563.550158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = -1.23 seconds Orbital eigenvalues (eV) -39.26469 -37.76982 -36.99428 -35.79239 -33.82763 -33.46253 -31.14919 -30.89752 -30.10761 -27.76975 -25.79396 -23.25380 -22.92001 -22.47135 -22.28471 -20.57551 -19.44689 -18.40575 -17.50059 -16.53728 -16.27201 -16.17100 -15.82676 -14.95472 -14.73482 -14.64927 -14.56658 -14.04904 -13.66443 -13.44423 -13.21586 -13.10015 -12.87707 -12.80390 -12.58314 -12.16496 -12.09311 -11.96647 -11.88527 -11.73355 -11.51300 -11.38433 -11.14865 -10.97535 -10.91719 -10.80906 -10.72024 -10.44769 -10.28671 -10.11050 -9.64817 -9.25652 -9.03632 -8.67549 -8.45030 -8.27491 -6.06117 -4.13046 0.42443 2.86737 3.25846 3.31564 3.33579 3.88325 4.05258 4.16508 4.34735 4.37060 4.45617 4.47818 4.83534 4.95939 5.04521 5.10317 5.14387 5.20760 5.23501 5.35403 5.49000 5.57776 5.62360 5.68992 5.70413 5.76784 5.85471 5.87321 6.02328 6.04694 6.11562 6.29293 6.37322 6.39873 6.67034 6.71192 6.84917 7.01639 7.08033 7.11234 7.35775 7.65185 7.89029 8.02226 8.36242 8.90532 9.52217 10.99118 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.003686 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.059467 B = 7594.956839 C = 8254.367629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.051 3.949 10 C -0.125 4.125 11 C 0.122 3.878 12 N -0.992 5.992 13 S 2.607 3.393 14 O -0.965 6.965 15 O -0.958 6.958 16 C -0.629 4.629 17 C -0.073 4.073 18 C -0.184 4.184 19 C 0.058 3.942 20 N -0.687 5.687 21 C 0.054 3.946 22 C -0.145 4.145 23 C 0.118 3.882 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.342 0.658 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -12.881 10.518 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.164 4.164 11 C -0.003 4.003 12 N -0.831 5.831 13 S 2.701 3.299 14 O -0.955 6.955 15 O -0.948 6.948 16 C -0.758 4.758 17 C -0.093 4.093 18 C -0.223 4.223 19 C -0.072 4.072 20 N -0.315 5.315 21 C -0.076 4.076 22 C -0.185 4.185 23 C -0.006 4.006 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.302 -14.192 10.663 17.900 hybrid contribution 0.932 2.520 -0.368 2.712 sum 3.234 -11.672 10.295 15.896 Atomic orbital electron populations 1.69831 1.05840 1.26611 1.50601 1.24963 0.94853 0.99026 0.95088 0.86691 0.79631 0.83283 0.78557 1.20322 1.21300 1.20408 1.21177 0.92847 0.90658 1.50658 0.92807 1.18584 0.92592 0.91428 0.94192 1.22033 0.98864 0.94693 1.00799 1.21517 0.90893 0.99051 0.88880 1.57582 1.46239 1.39288 1.39996 1.05021 0.75709 0.74046 0.75174 1.93557 1.81912 1.51172 1.68889 1.93553 1.33486 1.86302 1.81503 1.30808 1.19057 1.09318 1.16594 1.20886 0.96922 0.96725 0.94814 1.22778 0.96776 1.01810 1.00927 1.22015 0.95683 0.97737 0.91743 1.60678 1.02370 1.37787 1.30685 1.22077 0.91480 0.98624 0.95406 1.22278 0.98982 1.00092 0.97188 1.21797 0.90736 0.86751 1.01307 1.22112 0.99963 0.94977 0.99296 0.92873 0.95343 0.93126 0.92107 0.90837 0.91475 0.84974 0.84889 0.89957 0.90633 0.89432 0.90668 0.90089 0.84090 0.90719 0.90414 0.90857 0.91330 0.91578 0.90977 0.94492 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 11.30 55.43 0.63 -23.51 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.31 8.56 -34.44 -0.29 -13.61 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.05 1.16 2.06 -91.72 -0.19 0.97 16 10 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 11 C 0.12 2.03 6.31 -3.71 -0.02 2.01 16 12 N -0.99 -16.64 3.22 -113.27 -0.36 -17.01 16 13 S 2.61 39.62 5.07 -107.50 -0.54 39.07 16 14 O -0.96 -16.72 16.73 -57.54 -0.96 -17.68 16 15 O -0.96 -16.33 14.52 -57.54 -0.84 -17.17 16 16 C -0.63 -7.45 5.62 37.16 0.21 -7.24 16 17 C -0.07 -0.78 2.25 -90.50 -0.20 -0.99 16 18 C -0.18 -1.96 4.98 -26.65 -0.13 -2.09 16 19 C 0.06 0.53 6.55 -3.83 -0.03 0.50 16 20 N -0.69 -5.98 6.87 -113.81 -0.78 -6.77 16 21 C 0.05 0.44 6.55 -3.83 -0.03 0.42 16 22 C -0.15 -1.30 5.36 -26.65 -0.14 -1.44 16 23 C 0.12 2.16 6.34 -3.49 -0.02 2.14 16 24 C -0.12 -2.66 5.17 -26.39 -0.14 -2.79 16 25 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 30 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.13 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.06 5.79 -51.93 -0.30 0.76 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.34 2.65 8.86 -39.29 -0.35 2.30 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.21 7.09 -51.93 -0.37 0.84 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -30.00 360.12 -11.68 -41.69 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.00 Total: 3.57 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.22 Total: -23.07 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.52 Total: -47.28 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.80 Total: -34.85 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 39.62 SS G_CDS: -0.54 Total: 39.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.00 -11.68 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239085572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.635 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.23 seconds