Wall clock time and date at job start Tue Mar 31 2020 11:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00351 * 2 1 4 4 H 1.48496 * 109.46820 * 239.99592 * 3 2 1 5 5 H 1.48501 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46931 * 119.99533 * 3 2 1 7 7 C 1.37882 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.46150 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.31484 * 181.36804 * 10 9 7 12 12 N 1.46925 * 108.77713 * 305.36542 * 11 10 9 13 13 S 1.65593 * 120.62995 * 233.58569 * 12 11 10 14 14 O 1.42104 * 104.27905 * 333.92748 * 13 12 11 15 15 O 1.42102 * 104.27718 * 206.06528 * 13 12 11 16 16 C 1.81399 * 104.45079 * 89.99678 * 13 12 11 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.53120 * 109.52405 * 294.87786 * 17 16 13 19 19 C 1.53041 * 109.27438 * 182.50072 * 18 17 16 20 20 N 1.46843 * 109.57563 * 59.08350 * 19 18 17 21 21 C 1.46853 * 111.19703 * 298.28921 * 20 19 18 22 22 C 1.53037 * 109.52493 * 61.74098 * 21 20 19 23 23 C 1.46933 * 118.73827 * 53.85318 * 12 11 10 24 24 C 1.53047 * 109.44474 * 300.05398 * 9 7 2 25 25 H 0.97005 * 119.99764 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46300 * 60.01738 * 9 7 2 27 27 H 1.08997 * 109.49457 * 61.41352 * 10 9 7 28 28 H 1.09005 * 109.49164 * 301.32211 * 10 9 7 29 29 H 1.08997 * 109.58777 * 185.57144 * 11 10 9 30 30 H 1.09008 * 109.70018 * 65.21783 * 11 10 9 31 31 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 32 32 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 33 33 H 1.09004 * 109.51672 * 54.99762 * 17 16 13 34 34 H 1.08996 * 109.49932 * 302.37967 * 18 17 16 35 35 H 1.08997 * 109.50281 * 62.49328 * 18 17 16 36 36 H 1.08997 * 109.40865 * 299.06801 * 19 18 17 37 37 H 1.08998 * 109.45139 * 179.12612 * 19 18 17 38 38 H 1.00903 * 111.00403 * 62.38372 * 20 19 18 39 39 H 1.09003 * 109.46211 * 301.72751 * 21 20 19 40 40 H 1.09003 * 109.45179 * 181.75238 * 21 20 19 41 41 H 1.08998 * 109.50318 * 180.87952 * 22 21 20 42 42 H 1.09007 * 109.53221 * 60.78277 * 22 21 20 43 43 H 1.09004 * 109.58121 * 65.93504 * 23 12 11 44 44 H 1.08998 * 109.58227 * 186.35433 * 23 12 11 45 45 H 1.08996 * 109.49965 * 298.57776 * 24 9 7 46 46 H 1.09004 * 109.49273 * 58.67254 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0005 11 6 1.4765 -4.9867 -0.0340 12 7 0.5224 -5.0088 1.0831 13 16 0.5092 -6.2695 2.1566 14 8 1.0339 -7.3643 1.4180 15 8 -0.8216 -6.2920 2.6543 16 6 1.6674 -5.7670 3.4591 17 6 1.7434 -6.8626 4.5245 18 6 0.3865 -6.9932 5.2220 19 6 0.4863 -8.0462 6.3280 20 7 1.5185 -7.6490 7.2939 21 6 2.8384 -7.5642 6.6558 22 6 2.8094 -6.4957 5.5606 23 6 -0.4239 -3.8938 1.2260 24 6 0.3698 -2.5788 1.2494 25 1 -0.4850 0.8401 -0.0004 26 1 0.6250 -2.5571 -0.8898 27 1 2.8557 -3.6192 0.9028 28 1 2.8880 -3.5915 -0.8773 29 1 2.1750 -5.8175 0.0655 30 1 0.9370 -5.0738 -0.9772 31 1 2.6557 -5.6115 3.0264 32 1 1.3207 -4.8400 3.9159 33 1 2.0038 -7.8107 4.0540 34 1 0.1078 -6.0339 5.6581 35 1 -0.3679 -7.2965 4.4962 36 1 0.7505 -9.0084 5.8892 37 1 -0.4741 -8.1304 6.8366 38 1 1.2774 -6.7782 7.7431 39 1 3.0915 -8.5287 6.2155 40 1 3.5863 -7.2984 7.4029 41 1 3.7847 -6.4439 5.0768 42 1 2.5702 -5.5280 6.0018 43 1 -1.1154 -3.8912 0.3834 44 1 -0.9797 -4.0035 2.1572 45 1 0.9972 -2.5457 2.1400 46 1 -0.3227 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239085572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:11 Heat of formation + Delta-G solvation = -111.747853 kcal Electronic energy + Delta-G solvation = -26033.379005 eV Core-core repulsion = 22468.943054 eV Total energy + Delta-G solvation = -3564.435952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.00284 -39.30115 -38.27653 -37.07231 -35.27700 -34.61862 -32.62586 -31.82785 -31.67132 -28.64398 -27.60813 -24.24771 -23.96542 -23.92623 -23.46788 -21.38857 -20.92338 -19.75344 -18.87416 -18.20716 -17.48691 -17.27134 -16.88765 -16.50595 -15.68836 -15.62045 -15.44458 -15.30053 -14.98736 -14.86072 -14.53075 -14.40097 -14.35309 -13.94468 -13.70175 -13.47794 -13.36957 -13.07524 -12.93916 -12.86715 -12.78115 -12.57764 -12.49398 -12.43356 -12.22126 -12.10161 -12.02295 -11.87414 -11.58245 -11.40209 -11.21997 -10.92229 -10.78319 -10.37204 -9.81163 -9.34577 -8.05063 -6.18877 -0.76743 1.43496 1.44569 1.51399 1.60901 2.45235 2.78591 3.07797 3.21590 3.29012 3.47842 3.56127 3.72410 3.76131 4.09346 4.13132 4.27404 4.30775 4.38274 4.41142 4.44874 4.51091 4.60033 4.63011 4.71655 4.73236 4.81097 4.83959 4.92365 4.94202 4.99298 5.06034 5.11967 5.13150 5.29104 5.31757 5.35806 5.56208 5.64390 5.72234 6.03562 6.05351 6.20506 6.41861 6.47759 6.93198 7.49359 8.97957 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.003686 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.059467 B = 7594.956839 C = 8254.367629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.122 3.878 12 N -0.998 5.998 13 S 2.609 3.391 14 O -0.987 6.987 15 O -0.981 6.981 16 C -0.608 4.608 17 C -0.079 4.079 18 C -0.186 4.186 19 C 0.060 3.940 20 N -0.690 5.690 21 C 0.054 3.946 22 C -0.141 4.141 23 C 0.128 3.872 24 C -0.115 4.115 25 H 0.260 0.740 26 H -0.006 1.006 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.347 0.653 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -13.432 12.081 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.156 4.156 11 C -0.003 4.003 12 N -0.835 5.835 13 S 2.707 3.293 14 O -0.978 6.978 15 O -0.972 6.972 16 C -0.740 4.740 17 C -0.099 4.099 18 C -0.226 4.226 19 C -0.070 4.070 20 N -0.319 5.319 21 C -0.076 4.076 22 C -0.181 4.181 23 C 0.003 3.997 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.013 0.987 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.043 -14.758 12.191 19.564 hybrid contribution 0.401 2.660 -0.822 2.813 sum 4.443 -12.098 11.369 17.186 Atomic orbital electron populations 1.69978 1.07020 1.27044 1.51439 1.25673 0.95582 1.02069 0.95060 0.85772 0.78448 0.79658 0.78687 1.20029 1.21376 1.19664 1.21580 0.93083 0.92107 1.50209 0.92841 1.18581 0.93163 0.92272 0.93405 1.21903 0.98097 0.94014 1.01555 1.21515 0.91093 0.98667 0.88985 1.57563 1.46138 1.38761 1.41057 1.04900 0.75787 0.73232 0.75363 1.93524 1.82138 1.51983 1.70165 1.93524 1.35627 1.86387 1.81656 1.30616 1.18281 1.10115 1.15022 1.21015 0.97632 0.96325 0.94935 1.22803 0.96339 1.02423 1.01023 1.22005 0.96330 0.97217 0.91459 1.60686 1.02489 1.38256 1.30472 1.22128 0.91481 0.98430 0.95531 1.22269 0.98605 1.00417 0.96801 1.21542 0.90523 0.85912 1.01723 1.21890 0.99356 0.95532 0.98687 0.93127 0.98744 0.91977 0.91731 0.88325 0.91872 0.83054 0.83846 0.89765 0.90431 0.91232 0.90685 0.89441 0.83444 0.90721 0.88980 0.89873 0.91069 0.92700 0.89397 0.93923 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.68 11.30 21.45 0.24 -50.44 16 2 C 0.01 0.78 5.30 84.66 0.45 1.23 16 3 Si 0.95 41.93 29.54 68.60 2.03 43.96 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -27.57 8.56 25.60 0.22 -27.35 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 9 C 0.04 2.06 2.06 -11.51 -0.02 2.04 16 10 C -0.12 -4.27 5.30 30.67 0.16 -4.11 16 11 C 0.12 3.94 6.31 86.36 0.55 4.48 16 12 N -1.00 -32.49 3.22 -512.28 -1.65 -34.14 16 13 S 2.61 75.74 5.07 -56.49 -0.29 75.45 16 14 O -0.99 -32.86 16.73 -127.65 -2.14 -34.99 16 15 O -0.98 -32.84 14.52 -127.65 -1.85 -34.69 16 16 C -0.61 -12.73 5.62 71.98 0.40 -12.32 16 17 C -0.08 -1.48 2.25 -10.71 -0.02 -1.50 16 18 C -0.19 -3.66 4.98 30.65 0.15 -3.51 16 19 C 0.06 0.99 6.55 86.33 0.57 1.55 16 20 N -0.69 -10.37 6.87 -513.99 -3.53 -13.90 16 21 C 0.05 0.73 6.55 86.32 0.57 1.29 16 22 C -0.14 -2.06 5.36 30.64 0.16 -1.89 16 23 C 0.13 4.67 6.34 86.50 0.55 5.22 16 24 C -0.12 -4.97 5.17 30.82 0.16 -4.81 16 25 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 26 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.10 2.70 7.10 -2.39 -0.02 2.68 16 30 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.63 5.79 -2.39 -0.01 1.61 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.35 4.54 8.86 -89.69 -0.79 3.75 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 2.91 7.09 -2.39 -0.02 2.89 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 3.57 6.03 -2.38 -0.01 3.56 16 Total: -1.00 -64.24 360.12 -3.13 -67.38 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.16 Total: 21.04 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 3.89 Total: -39.67 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.93 Total: -98.47 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: -3.99 Total: -69.68 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 75.74 SS G_CDS: -0.29 Total: 75.45 kcal Total: -64.24 -3.13 -67.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239085572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.369 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds