Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.74266 * 276.67425 * 9 7 2 11 11 N 1.47578 * 86.11700 * 222.04884 * 10 9 7 12 12 C 1.34781 * 134.49101 * 204.63711 * 11 10 9 13 13 O 1.21280 * 119.99607 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00312 * 0.02562 * 12 11 10 15 15 H 1.09004 * 115.55807 * 34.41932 * 14 12 11 16 16 C 1.53144 * 117.51862 * 248.66958 * 14 12 11 17 17 C 1.52331 * 117.51791 * 180.16684 * 14 12 11 18 18 C 1.53289 * 128.80213 * 349.56231 * 17 14 12 19 19 N 1.48102 * 85.92325 * 196.85498 * 18 17 14 20 20 C 1.46896 * 110.99994 * 137.12449 * 19 18 17 21 21 C 1.50703 * 109.47150 * 70.41589 * 20 19 18 22 22 C 1.41381 * 126.57817 * 269.71751 * 21 20 19 23 23 C 1.34518 * 106.84021 * 179.83018 * 22 21 20 24 24 O 1.34305 * 108.41652 * 0.43028 * 23 22 21 25 25 C 1.34302 * 109.47936 * 359.71873 * 24 23 22 26 26 C 1.48108 * 90.95709 * 24.14931 * 19 18 17 27 27 C 1.47580 * 91.01765 * 24.64172 * 11 10 9 28 28 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 29 29 H 1.08997 * 112.94762 * 48.40610 * 9 7 2 30 30 H 1.08997 * 113.76595 * 336.35229 * 10 9 7 31 31 H 1.09004 * 113.77048 * 107.74842 * 10 9 7 32 32 H 1.09002 * 117.51864 * 359.97438 * 16 14 12 33 33 H 1.09001 * 117.51700 * 145.12286 * 16 14 12 34 34 H 1.08990 * 113.80449 * 311.10752 * 18 17 14 35 35 H 1.09000 * 113.79792 * 82.61056 * 18 17 14 36 36 H 1.09001 * 109.47508 * 190.41398 * 20 19 18 37 37 H 1.08998 * 109.47283 * 310.41484 * 20 19 18 38 38 H 1.07998 * 126.58315 * 359.97438 * 22 21 20 39 39 H 1.07999 * 125.78870 * 180.10765 * 23 22 21 40 40 H 1.08001 * 125.78966 * 180.02562 * 25 24 23 41 41 H 1.08996 * 113.80255 * 221.59549 * 26 19 18 42 42 H 1.09000 * 113.90247 * 90.11559 * 26 19 18 43 43 H 1.08998 * 113.77108 * 221.06070 * 27 11 10 44 44 H 1.08991 * 113.87349 * 89.66683 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7988 -2.9537 1.4001 11 7 1.2204 -4.3063 0.9871 12 6 0.8819 -5.5563 1.3604 13 8 1.4097 -6.5112 0.8308 14 6 -0.1525 -5.7676 2.4358 15 1 -0.9614 -5.0373 2.4603 16 6 0.3246 -6.3400 3.7738 17 6 -0.4891 -7.2037 2.8163 18 6 -0.0830 -8.5039 2.1133 19 7 -1.1670 -9.1413 2.8957 20 6 -1.9417 -10.0703 2.0621 21 6 -1.1004 -11.2790 1.7421 22 6 -0.2480 -11.4406 0.6258 23 6 0.3088 -12.6604 0.7340 24 8 -0.1659 -13.2464 1.8453 25 6 -1.0209 -12.4133 2.4607 26 6 -1.8655 -7.8425 3.0328 27 6 2.1616 -3.7405 0.0012 28 1 -0.4850 -0.8401 -0.0004 29 1 0.4618 -2.5341 -0.7504 30 1 1.3949 -2.5362 2.2115 31 1 -0.2743 -2.8598 1.5671 32 1 1.3865 -6.5641 3.8758 33 1 -0.1711 -5.9868 4.6781 34 1 -0.2620 -8.4972 1.0382 35 1 0.9147 -8.8540 2.3780 36 1 -2.8362 -10.3826 2.6010 37 1 -2.2305 -9.5731 1.1361 38 1 -0.0750 -10.7218 -0.1614 39 1 1.0135 -13.0966 0.0416 40 1 -1.5538 -12.6190 3.3772 41 1 -2.2800 -7.6686 4.0258 42 1 -2.5767 -7.6369 2.2327 43 1 2.1766 -4.2747 -0.9488 44 1 3.1586 -3.5537 0.3999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277182112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = 80.975647 kcal Electronic energy + Delta-G solvation = -25551.148596 eV Core-core repulsion = 21859.625811 eV Total energy + Delta-G solvation = -3691.522785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.71549 -40.56666 -39.19107 -37.21736 -35.26949 -33.34911 -32.88891 -30.32002 -29.15540 -27.71642 -26.25909 -25.47298 -24.99583 -23.23754 -23.07184 -21.76426 -20.58658 -20.26395 -18.84915 -18.03750 -17.63930 -17.19452 -16.57770 -16.27446 -15.73607 -15.55041 -15.23485 -14.88413 -14.78197 -14.20641 -13.99050 -13.82456 -13.53466 -13.16677 -12.95178 -12.80203 -12.43466 -12.29509 -11.90798 -11.89705 -11.68362 -11.52920 -11.47898 -11.01026 -10.72993 -10.72725 -10.43855 -10.20758 -10.19296 -9.83001 -9.68878 -9.41930 -8.89549 -8.69211 -8.63757 -8.56213 -7.97367 -6.54266 -4.27588 1.60049 2.38641 2.86155 2.97175 3.30531 3.36756 3.37994 3.56361 3.70583 4.09557 4.25168 4.41645 4.52595 4.58234 4.62360 4.78196 4.88116 5.10972 5.14098 5.17459 5.23772 5.33641 5.37145 5.44145 5.54107 5.61110 5.66813 5.80885 5.84145 5.89364 5.95194 5.97143 6.02282 6.03769 6.14528 6.18864 6.22483 6.31911 6.39779 6.42673 6.61795 6.88614 6.95992 7.25489 7.95666 8.24486 8.37167 8.63065 8.70642 9.45300 10.85122 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.002320 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.723943 B =12066.692549 C =12519.838406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.069 2.931 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.013 3.987 10 C 0.097 3.903 11 N -0.635 5.635 12 C 0.554 3.446 13 O -0.561 6.561 14 C -0.166 4.166 15 H 0.121 0.879 16 C -0.111 4.111 17 C -0.138 4.138 18 C 0.072 3.928 19 N -0.475 5.475 20 C 0.089 3.911 21 C -0.174 4.174 22 C -0.203 4.203 23 C -0.045 4.045 24 O -0.180 6.180 25 C -0.026 4.026 26 C 0.043 3.957 27 C 0.113 3.887 28 H 0.270 0.730 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.146 0.854 39 H 0.201 0.799 40 H 0.201 0.799 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -19.280 6.242 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.897 3.103 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.025 4.025 11 N -0.369 5.369 12 C 0.343 3.657 13 O -0.441 6.441 14 C -0.188 4.188 15 H 0.139 0.861 16 C -0.149 4.149 17 C -0.139 4.139 18 C -0.056 4.056 19 N -0.198 5.198 20 C -0.039 4.039 21 C -0.175 4.175 22 C -0.223 4.223 23 C -0.112 4.112 24 O -0.076 6.076 25 C -0.094 4.094 26 C -0.085 4.085 27 C -0.009 4.009 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.164 0.836 39 H 0.218 0.782 40 H 0.218 0.782 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.114 -19.011 6.682 20.567 hybrid contribution -0.101 -0.948 -0.818 1.256 sum -4.215 -19.959 5.864 21.226 Atomic orbital electron populations 1.70822 1.06887 1.30739 1.45311 1.25892 0.96451 1.02787 0.92975 0.83531 0.74945 0.75139 0.76727 1.21282 1.21267 1.20715 1.21814 0.94297 0.90673 1.56626 0.92543 1.20647 0.94899 0.93122 0.91951 1.23847 0.99001 0.77524 1.02135 1.50340 1.41970 1.04573 1.39975 1.19235 0.82398 0.81784 0.82248 1.90618 1.56445 1.40334 1.56699 1.22135 1.01515 0.97779 0.97357 0.86086 1.22733 1.00429 0.99731 0.91990 1.22571 0.97490 0.90607 1.03254 1.23238 0.96792 0.89080 0.96494 1.68685 1.07309 1.07018 1.36798 1.20928 0.95184 0.91255 0.96531 1.20234 1.03341 0.96864 0.97093 1.21804 1.01164 0.98294 1.01009 1.23981 1.02803 0.94453 0.90013 1.84061 1.48325 1.42444 1.32742 1.23830 0.96446 0.89761 0.99404 1.23529 0.93943 0.88658 1.02357 1.23336 0.94291 0.92765 0.90523 0.91966 0.92829 0.90257 0.92267 0.88078 0.87518 0.90515 0.89448 0.89901 0.93162 0.83623 0.78227 0.78218 0.88924 0.90736 0.92081 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.65 55.43 0.76 -24.39 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.07 23.34 29.90 -169.99 -5.08 18.25 16 4 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.60 -15.25 8.77 -34.44 -0.30 -15.56 16 8 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.01 0.30 3.09 -90.84 -0.28 0.02 16 10 C 0.10 2.00 8.12 -2.97 -0.02 1.97 16 11 N -0.64 -12.77 3.61 -178.42 -0.64 -13.42 16 12 C 0.55 10.63 7.84 -10.98 -0.09 10.55 16 13 O -0.56 -12.01 15.86 5.56 0.09 -11.93 16 14 C -0.17 -2.51 5.94 -92.04 -0.55 -3.05 16 15 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 16 C -0.11 -1.43 10.24 -26.92 -0.28 -1.71 16 17 C -0.14 -1.83 3.04 -154.91 -0.47 -2.30 16 18 C 0.07 1.00 5.68 -3.01 -0.02 0.99 16 19 N -0.48 -5.64 6.25 -243.07 -1.52 -7.16 16 20 C 0.09 0.92 5.34 -4.98 -0.03 0.90 16 21 C -0.17 -1.90 5.26 -104.74 -0.55 -2.45 16 22 C -0.20 -2.23 10.60 -39.70 -0.42 -2.65 16 23 C -0.05 -0.43 12.09 29.42 0.36 -0.08 16 24 O -0.18 -1.91 10.65 5.71 0.06 -1.84 16 25 C -0.03 -0.25 12.01 29.42 0.35 0.10 16 26 C 0.04 0.47 7.99 -3.01 -0.02 0.45 16 27 C 0.11 2.36 8.39 -2.97 -0.02 2.33 16 28 H 0.27 7.40 7.04 -40.82 -0.29 7.11 16 29 H 0.05 1.32 7.61 -51.93 -0.40 0.93 16 30 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.17 7.66 -51.93 -0.40 0.77 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.53 7.71 -51.93 -0.40 0.13 16 38 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.76 7.80 -51.93 -0.41 0.35 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -30.44 372.23 -9.75 -40.19 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.58 Total: 4.63 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.44 Total: -9.95 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -1.41 Total: -44.96 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.15 Total: -13.77 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.08 Total: 18.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.44 -9.75 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277182112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.165 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds